Rmu_sc0001187.1_g000001

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001187.1
OG0017219
Physical Location & Seq
Forward (+)
36 .. 1094
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
atgacgactaataaggaaatcccttgggatcattctagtttccctgaaatcatctcccgatctattgatccggtgccccattattcctctccgtcagacctctaccgcagtctctgcgtttcccccatcttccttgacgaaggccatttgagctttgcgtatgatcgggtgactggtaaaaaatgctggatgctgggagccaggcttttacttattgatttggcagaaattccagaatactggaactggagttctgtacccgaatccaggttctcccaagtggctgagctcagatttgtatatagtcttaagatcaagggatccatagcgacatatatgttgtccccgagaacaacttatgtagcttaccttgtatataagtttccaaatatatctcgatctggttttcatgaaagccctgttagcttgcgtgtagtgcgtgtagttaatattcaacgcagagttgtagctcaacataatcgtgtcttcctgataggagatatggcttcacaagctcgaaggagaaatgatggatggatggagattgagttcggtgaaatctcctatattgaagataatgctactatagagtgtattctagagggatctgaaagttttgtgagaaaaagaggtctcattgtggaaggtattgagtttaggcctagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

222

Amino Acids

25.66

Weight (kDa)

7.74

Isoelectric Point (pI)

77.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 60 - 221 2.6e-40 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017219)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12730
rosa_chinensis RchiOBHm_Chr2g0100791
rosa_laevigata RLG00000017010
rosa_multiflora Rmu_sc0001187.1_g000001 Rmu_sc0001659.1_g000017
rosa_roxburghii Rroxscaffold_2G00141860
rosa_rugosa Rorug02G0092700 Rorug02G0092700 Rorug02G0092800
rosa_samantha Rh2AG140500 Rh2BG145400 Rh2CG146300 Rh2DG145800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AciI CCGC 1 cut(s) 106
AclWI GGATC 5 cut(s) 36, 62, 315, 328, 613
AcsI RAATTY 1 cut(s) 228
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 267
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 2 cut(s) 455, 572
AjnI CCWGG 2 cut(s) 200, 266
AloI GAACNNNNNNTCC 4 cut(s) 235, 267, 533, 565
AluBI AGCT 6 cut(s) 153, 289, 365, 426, 470, 515
AluI AGCT 6 cut(s) 153, 289, 365, 426, 470, 515
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 116, 638
AlwI GGATC 5 cut(s) 36, 62, 315, 328, 613
AlwNI CAGNNNCTG 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 346
AoxI GGCC 2 cut(s) 142, 659
ApoI RAATTY 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 181, 566
AvaI CYCGRG 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 78
BamHI GGATCC 1 cut(s) 320
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 291
BccI CCATC 4 cut(s) 134, 524, 528, 532
BciT130I CCWGG 2 cut(s) 202, 268
BcoDI GTCTC 2 cut(s) 116, 638
BfaI CTAG 3 cut(s) 36, 599, 663
BfmI CTRYAG 1 cut(s) 585
BfrI CTTAAG 1 cut(s) 308
BlpI GCTNAGC 1 cut(s) 285
Bme1390I CCNGG 2 cut(s) 202, 268
BmeT110I CYCGRG 1 cut(s) 346
BmiI GGNNCC 3 cut(s) 75, 199, 322
BmrFI CCNGG 2 cut(s) 202, 268
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 268
Bpu1102I GCTNAGC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 638
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 3 cut(s) 178, 245, 251
BseBI CCWGG 2 cut(s) 202, 268
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 3 cut(s) 195, 539, 543
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 276, 304
BseNI ACTGG 3 cut(s) 178, 245, 251
BseSI GKGCMC 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 193
BshFI GGCC 2 cut(s) 144, 661
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 2 cut(s) 116, 638
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 2 cut(s) 144, 661
Bso31I GGTCTC 1 cut(s) 638
BsoBI CYCGRG 1 cut(s) 346
Bsp1286I GDGCHC 2 cut(s) 78, 291
Bsp143I GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 1 cut(s) 106
BspANI GGCC 2 cut(s) 144, 661
BspCNI CTCAG 2 cut(s) 277, 303
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 3 cut(s) 75, 199, 322
BspPI GGATC 5 cut(s) 36, 62, 315, 328, 613
BspT107I GGYRCC 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 638
BsrI ACTGG 3 cut(s) 178, 245, 251
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 2 cut(s) 202, 268
BstAFI CTTAAG 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 2 cut(s) 285, 290
BstF5I GGATG 3 cut(s) 195, 539, 543
BstKTI GATC 8 cut(s) 31, 62, 70, 166, 315, 323, 401, 608
BstMAI GTCTC 2 cut(s) 116, 638
BstMBI GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
BstMWI GCNNNNNNNGC 5 cut(s) 114, 150, 423, 436, 512
BstNI CCWGG 2 cut(s) 202, 268
BstSCI CCNGG 2 cut(s) 200, 266
BstSFI CTRYAG 1 cut(s) 585
BstSLI GKGCMC 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 2 cut(s) 320, 605
BstXI CCANNNNNNTGG 1 cut(s) 240
BstYI RGATCY 2 cut(s) 320, 605
BsuRI GGCC 2 cut(s) 144, 661
BtsCI GGATG 3 cut(s) 195, 539, 543
Cac8I GCNNGC 1 cut(s) 428
CaiI CAGNNNCTG 1 cut(s) 114
CciI TCATGA 1 cut(s) 409
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 410
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 2 cut(s) 285, 290
DpnI GATC 8 cut(s) 30, 61, 69, 165, 314, 322, 400, 607
DpnII GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 23
Eco147I AGGCCT 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 638
Eco53kI GAGCTC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 200, 266
EcoT14I CCWWGG 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 1 cut(s) 413
FaqI GGGAC 1 cut(s) 328
FatI CATG 1 cut(s) 409
FokI GGATG 3 cut(s) 202, 546, 550
FriOI GRGCYC 1 cut(s) 291
FspBI CTAG 3 cut(s) 36, 599, 663
GsaI CCCAGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 2 cut(s) 144, 661
HapII CCGG 1 cut(s) 71
Hin1II CATG 1 cut(s) 413
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 71
HphI GGTGA 2 cut(s) 181, 566
Hpy188I TCNGA 3 cut(s) 97, 293, 610
Hpy188III TCNNGA 6 cut(s) 57, 233, 396, 410, 490, 599
HpyAV CCTTC 3 cut(s) 134, 513, 638
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 150, 423, 436, 512
HpyF3I CTNAG 2 cut(s) 285, 290
Hsp92II CATG 1 cut(s) 413
Kzo9I GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
LmnI GCTCC 1 cut(s) 197
LweI GCATC 1 cut(s) 180
MaeI CTAG 3 cut(s) 36, 599, 663
MaeIII GTNAC 1 cut(s) 169
MalI GATC 8 cut(s) 30, 61, 69, 165, 314, 322, 400, 607
MboI GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
MboII GAAGA 3 cut(s) 121, 478, 584
MflI RGATCY 2 cut(s) 320, 605
MhlI GDGCHC 2 cut(s) 78, 291
MluCI AATT 1 cut(s) 228
MnlI CCTC 4 cut(s) 97, 110, 595, 623
MseI TTAA 2 cut(s) 309, 447
MslI CAYNNNNRTG 1 cut(s) 480
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 2 cut(s) 202, 268
MvaI CCWGG 2 cut(s) 202, 268
MwoI GCNNNNNNNGC 5 cut(s) 114, 150, 423, 436, 512
NdeII GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
NlaIII CATG 1 cut(s) 413
NlaIV GGNNCC 3 cut(s) 75, 199, 322
NmuCI GTSAC 1 cut(s) 169
PagI TCATGA 1 cut(s) 409
PceI AGGCCT 1 cut(s) 661
PfeI GAWTC 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 200, 266
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 200, 266
PspN4I GGNNCC 3 cut(s) 75, 199, 322
PstNI CAGNNNCTG 1 cut(s) 114
PsuI RGATCY 2 cut(s) 320, 605
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 480
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 309, 447
Sau3AI GATC 8 cut(s) 28, 59, 67, 163, 312, 320, 398, 605
ScrFI CCNGG 2 cut(s) 202, 268
SduI GDGCHC 2 cut(s) 78, 291
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 228
SseBI AGGCCT 1 cut(s) 661
SsiI CCGC 1 cut(s) 106
SspI AATATT 1 cut(s) 451
SspMI CTAG 3 cut(s) 36, 599, 663
SstI GAGCTC 1 cut(s) 291
StuI AGGCCT 1 cut(s) 661
StyD4I CCNGG 2 cut(s) 200, 266
StyI CCWWGG 1 cut(s) 23
TaqI TCGA 2 cut(s) 397, 517
TasI AATT 1 cut(s) 228
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 309, 447
Tru9I TTAA 2 cut(s) 309, 447
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 398, 426
TspGWI ACGGA 1 cut(s) 81
Vha464I CTTAAG 1 cut(s) 308
XapI RAATTY 1 cut(s) 228
XbaI TCTAGA 1 cut(s) 598
XspI CTAG 3 cut(s) 36, 599, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.