Rmu_sc0001198.1_g000002

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001198.1
OG0019345
Physical Location & Seq
Reverse (-)
12616 .. 14268
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001198.1_g000002.1.cds

Sequence Viewer

Length: 948 bp
atggctggcatagtccctatccatgatgccatggatggcgtccatcatggtgatggcgcccttggtgatgctgcaatcactatcttgcttcaaaatagcgtttcagacgctcaggctcaaccaaaatcctcattggttgcttctaaagcctctcgcttagagtttacatcgaaaggtttttcgatggatattgcaatgggcttgatgttggacatcacattcccatgtacacacccaaatggtcttgcggaaaagactacgatgatagtcaggacattggtaatgcgcgccaatcttcttacattcgcttggggtgatgcaatatcgcatgcagctatgctaattcgtctacgacctaccgccactcaatgcacctatgcgttacagctagtgactgggtacacatattttgcgatctcattatcaaccgctagatttgctgatgtcactttgatgaaacagtcttcctatcgtttgggggagataagaacacagatgttcaacaggaacgacaggatttgtcgtggcctgtccccactatgtctcatctcgatccctattaaagtgacgagatcacacaaatatgctgcaaacatacctgcaagaaaggacgtccctccgagaggacgtagcgccacctacacggaggccatggccccagctaggatgcgtgggaggcccgtgggttcgaaggatactttagcatattccaatcctttgatcatcaagactcaagatccgtctcatgagaatcttccgggttgtggttaccgttgggggacgcctcaaaaacctattcttgagaatatagagctctatgaaacttacactagtgtacatgagacgtgggatagaaactcgatcataattgatgatgtagttacgcattttgttgcgcatgagcttgctgagtctgatgatatcgaaccacgctccgttgatgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

315

Amino Acids

34.75

Weight (kDa)

7.15

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 615
Acc16I TGCGCA 1 cut(s) 897
Acc36I ACCTGC 1 cut(s) 607
AccB1I GGYRCC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 349
AccII CGCG 1 cut(s) 288
AciI CCGC 3 cut(s) 248, 360, 429
AclWI GGATC 2 cut(s) 547, 731
AcyI GRCGYC 4 cut(s) 39, 57, 612, 782
AfaI GTAC 3 cut(s) 229, 401, 837
AfiI CCNNNNNNNGG 3 cut(s) 623, 663, 764
AgsI TTSAA 2 cut(s) 92, 502
AhlI ACTAGT 1 cut(s) 830
AjiI CACGTC 1 cut(s) 846
AluBI AGCT 5 cut(s) 335, 388, 662, 814, 904
AluI AGCT 5 cut(s) 335, 388, 662, 814, 904
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 3 cut(s) 548, 747, 836
AlwI GGATC 2 cut(s) 547, 731
AoxI GGCC 4 cut(s) 526, 648, 654, 677
ApeKI GCWGC 3 cut(s) 71, 332, 587
AspLEI GCGC 5 cut(s) 59, 288, 290, 635, 898
AspS9I GGNCC 2 cut(s) 655, 678
AsuC2I CCSGG 1 cut(s) 759
AsuHPI GGTGA 3 cut(s) 62, 77, 326
AsuII TTCGAA 1 cut(s) 689
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 816
BbsI GAAGAC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 3 cut(s) 58, 344, 574
BccI CCATC 4 cut(s) 29, 47, 51, 178
BciVI GTATCC 1 cut(s) 688
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 1 cut(s) 759
BcoDI GTCTC 3 cut(s) 548, 747, 836
BcuI ACTAGT 1 cut(s) 830
BfaI CTAG 4 cut(s) 389, 432, 663, 831
BfoI RGCGCY 2 cut(s) 60, 636
BfuAI ACCTGC 1 cut(s) 607
BfuI GTATCC 1 cut(s) 688
BisI GCNGC 3 cut(s) 72, 333, 588
BlsI GCNGC 3 cut(s) 73, 334, 589
Bme1390I CCNGG 1 cut(s) 759
BmgBI CACGTC 1 cut(s) 846
BmgT120I GGNCC 2 cut(s) 655, 678
BmiI GGNNCC 2 cut(s) 58, 657
BmrFI CCNGG 1 cut(s) 759
BmrI ACTGGG 1 cut(s) 405
BmsI GCATC 4 cut(s) 16, 58, 307, 657
BmuI ACTGGG 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 689
BpuEI CTTGAG 2 cut(s) 717, 821
BpuMI CCSGG 1 cut(s) 759
BsaHI GRCGYC 4 cut(s) 39, 57, 612, 782
BsaJI CCNNGG 4 cut(s) 30, 61, 651, 681
Bsc4I CCNNNNNNNGG 3 cut(s) 623, 663, 764
Bse1I ACTGG 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 201
BseDI CCNNGG 4 cut(s) 30, 61, 651, 681
BseGI GGATG 2 cut(s) 40, 672
BseLI CCNNNNNNNGG 3 cut(s) 623, 663, 764
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 2 cut(s) 125, 900
BseNI ACTGG 1 cut(s) 400
BsePI GCGCGC 1 cut(s) 286
BseXI GCAGC 3 cut(s) 58, 344, 574
BseYI CCCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 4 cut(s) 528, 650, 656, 679
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 816
BsiSI CCGG 1 cut(s) 758
BslFI GGGAC 3 cut(s) 517, 599, 793
BslI CCNNNNNNNGG 3 cut(s) 623, 663, 764
BsmAI GTCTC 3 cut(s) 548, 747, 836
BsmBI CGTCTC 2 cut(s) 747, 836
BsmFI GGGAC 3 cut(s) 517, 599, 793
BsnI GGCC 4 cut(s) 528, 650, 656, 679
Bsp119I TTCGAA 1 cut(s) 689
Bsp1286I GDGCHC 1 cut(s) 816
Bsp1407I TGTACA 2 cut(s) 227, 835
Bsp143I GATC 6 cut(s) 414, 552, 572, 720, 736, 861
Bsp19I CCATGG 2 cut(s) 30, 651
BspACI CCGC 3 cut(s) 248, 360, 429
BspANI GGCC 4 cut(s) 528, 650, 656, 679
BspCNI CTCAG 2 cut(s) 124, 901
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 58, 657
BspMI ACCTGC 1 cut(s) 607
BspPI GGATC 2 cut(s) 547, 731
BspT104I TTCGAA 1 cut(s) 689
BspT107I GGYRCC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 201
BsrGI TGTACA 2 cut(s) 227, 835
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 4 cut(s) 30, 61, 651, 681
BssHII GCGCGC 1 cut(s) 286
BssMI GATC 6 cut(s) 414, 552, 572, 720, 736, 861
BssNI GRCGYC 4 cut(s) 39, 57, 612, 782
BssT1I CCWWGG 3 cut(s) 30, 61, 651
Bst4CI ACNGT 2 cut(s) 462, 773
BstACI GRCGYC 4 cut(s) 39, 57, 612, 782
BstAUI TGTACA 2 cut(s) 227, 835
BstBI TTCGAA 1 cut(s) 689
BstC8I GCNNGC 4 cut(s) 7, 288, 330, 906
BstDEI CTNAG 3 cut(s) 111, 157, 909
BstDSI CCRYGG 3 cut(s) 30, 651, 681
BstEII GGTNACC 1 cut(s) 767
BstENI CCTNNNNNAGG 1 cut(s) 621
BstF5I GGATG 2 cut(s) 40, 672
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 2 cut(s) 60, 636
BstHHI GCGC 5 cut(s) 59, 288, 290, 635, 898
BstKTI GATC 6 cut(s) 417, 555, 575, 723, 739, 864
BstMAI GTCTC 3 cut(s) 548, 747, 836
BstMBI GATC 6 cut(s) 414, 552, 572, 720, 736, 861
BstMWI GCNNNNNNNGC 3 cut(s) 146, 437, 676
BstNSI RCATGY 1 cut(s) 332
BstPI GGTNACC 1 cut(s) 767
BstSCI CCNGG 1 cut(s) 757
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 58, 344, 574
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BsuI GTATCC 1 cut(s) 688
BsuRI GGCC 4 cut(s) 528, 650, 656, 679
BtgI CCRYGG 3 cut(s) 30, 651, 681
BtrI CACGTC 1 cut(s) 846
BtsCI GGATG 2 cut(s) 40, 672
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 4 cut(s) 7, 288, 330, 906
CciI TCATGA 1 cut(s) 745
CfoI GCGC 5 cut(s) 59, 288, 290, 635, 898
Cfr13I GGNCC 2 cut(s) 655, 678
CseI GACGC 3 cut(s) 28, 116, 790
Csp6I GTAC 3 cut(s) 228, 400, 836
CviAII CATG 9 cut(s) 23, 31, 47, 225, 329, 652, 746, 839, 899
CviQI GTAC 3 cut(s) 228, 400, 836
DdeI CTNAG 3 cut(s) 111, 157, 909
DinI GGCGCC 1 cut(s) 58
DpnI GATC 6 cut(s) 416, 554, 574, 722, 738, 863
DpnII GATC 6 cut(s) 414, 552, 572, 720, 736, 861
Ecl136II GAGCTC 1 cut(s) 814
Eco130I CCWWGG 3 cut(s) 30, 61, 651
Eco24I GRGCYC 1 cut(s) 816
Eco32I GATATC 1 cut(s) 922
Eco53kI GAGCTC 1 cut(s) 814
Eco91I GGTNACC 1 cut(s) 767
EcoICRI GAGCTC 1 cut(s) 814
EcoNI CCTNNNNNAGG 1 cut(s) 621
EcoO65I GGTNACC 1 cut(s) 767
EcoRV GATATC 1 cut(s) 922
EcoT14I CCWWGG 3 cut(s) 30, 61, 651
EcoT38I GRGCYC 1 cut(s) 816
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 3 cut(s) 30, 61, 651
Esp3I CGTCTC 2 cut(s) 747, 836
FaeI CATG 9 cut(s) 26, 34, 50, 228, 332, 655, 749, 842, 902
FaqI GGGAC 3 cut(s) 517, 599, 793
FatI CATG 9 cut(s) 22, 30, 46, 224, 328, 651, 745, 838, 898
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 1 cut(s) 349
Fnu4HI GCNGC 3 cut(s) 72, 333, 588
FokI GGATG 2 cut(s) 47, 679
FriOI GRGCYC 1 cut(s) 816
Fsp4HI GCNGC 3 cut(s) 72, 333, 588
FspBI CTAG 4 cut(s) 389, 432, 663, 831
FspI TGCGCA 1 cut(s) 897
GlaI GCGC 5 cut(s) 58, 287, 289, 634, 897
GluI GCNGC 3 cut(s) 72, 333, 588
GsaI CCCAGC 1 cut(s) 662
HaeII RGCGCY 2 cut(s) 60, 636
HaeIII GGCC 4 cut(s) 528, 650, 656, 679
HapII CCGG 1 cut(s) 758
HgaI GACGC 3 cut(s) 28, 116, 790
HhaI GCGC 5 cut(s) 59, 288, 290, 635, 898
Hin1I GRCGYC 4 cut(s) 39, 57, 612, 782
Hin1II CATG 9 cut(s) 26, 34, 50, 228, 332, 655, 749, 842, 902
Hin6I GCGC 5 cut(s) 57, 286, 288, 633, 896
HinP1I GCGC 5 cut(s) 57, 286, 288, 633, 896
HinfI GANTC 3 cut(s) 730, 751, 911
HpaII CCGG 1 cut(s) 758
HphI GGTGA 3 cut(s) 62, 77, 326
Hpy166II GTNNAC 5 cut(s) 165, 230, 350, 402, 836
Hpy188I TCNGA 3 cut(s) 106, 621, 916
Hpy188III TCNNGA 6 cut(s) 271, 550, 727, 734, 746, 800
Hpy8I GTNNAC 5 cut(s) 165, 230, 350, 402, 836
HpyAV CCTTC 1 cut(s) 685
HpyCH4III ACNGT 2 cut(s) 462, 773
HpyCH4IV ACGT 3 cut(s) 612, 628, 845
HpyCH4V TGCA 7 cut(s) 74, 194, 320, 332, 372, 590, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 437, 676
HpyF3I CTNAG 3 cut(s) 111, 157, 909
HpySE526I ACGT 3 cut(s) 612, 628, 845
Hsp92I GRCGYC 4 cut(s) 39, 57, 612, 782
Hsp92II CATG 9 cut(s) 26, 34, 50, 228, 332, 655, 749, 842, 902
HspAI GCGC 5 cut(s) 57, 286, 288, 633, 896
KasI GGCGCC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 6 cut(s) 414, 552, 572, 720, 736, 861
LmnI GCTCC 1 cut(s) 938
LpnPI CCDG 9 cut(s) 98, 256, 381, 490, 499, 542, 612, 672, 771
Lsp1109I GCAGC 3 cut(s) 58, 344, 574
LweI GCATC 4 cut(s) 16, 58, 307, 657
MaeI CTAG 4 cut(s) 389, 432, 663, 831
MaeII ACGT 3 cut(s) 612, 628, 845
MaeIII GTNAC 6 cut(s) 381, 391, 445, 565, 767, 880
MalI GATC 6 cut(s) 416, 554, 574, 722, 738, 863
MboI GATC 6 cut(s) 414, 552, 572, 720, 736, 861
MboII GAAGA 3 cut(s) 287, 456, 746
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 1 cut(s) 816
MluCI AATT 2 cut(s) 342, 867
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 724, 920
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 7 cut(s) 139, 160, 617, 627, 640, 669, 795
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 6 cut(s) 48, 51, 223, 237, 452, 582
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 759
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 146, 437, 676
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 1 cut(s) 759
NcoI CCATGG 2 cut(s) 30, 651
NdeII GATC 6 cut(s) 414, 552, 572, 720, 736, 861
NlaIII CATG 9 cut(s) 26, 34, 50, 228, 332, 655, 749, 842, 902
NlaIV GGNNCC 2 cut(s) 58, 657
NmuCI GTSAC 3 cut(s) 391, 445, 565
NsbI TGCGCA 1 cut(s) 897
NspI RCATGY 1 cut(s) 332
NspV TTCGAA 1 cut(s) 689
PaeI GCATGC 1 cut(s) 332
PagI TCATGA 1 cut(s) 745
PauI GCGCGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 751
PkrI GCNGC 3 cut(s) 73, 334, 589
PleI GAGTC 2 cut(s) 724, 919
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 724, 919
Psp124BI GAGCTC 1 cut(s) 816
PspEI GGTNACC 1 cut(s) 767
PspFI CCCAGC 1 cut(s) 658
PspN4I GGNNCC 2 cut(s) 58, 657
PspPI GGNCC 2 cut(s) 655, 678
PsuI RGATCY 1 cut(s) 736
PteI GCGCGC 1 cut(s) 286
RsaI GTAC 3 cut(s) 229, 401, 837
RsaNI GTAC 3 cut(s) 228, 400, 836
RseI CAYNNNNRTG 6 cut(s) 48, 51, 223, 237, 452, 582
SacI GAGCTC 1 cut(s) 816
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 3 cut(s) 72, 333, 588
Sau3AI GATC 6 cut(s) 414, 552, 572, 720, 736, 861
Sau96I GGNCC 2 cut(s) 655, 678
SchI GAGTC 2 cut(s) 724, 920
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 1 cut(s) 816
SfaNI GCATC 4 cut(s) 16, 58, 307, 657
SfoI GGCGCC 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 689
SmiMI CAYNNNNRTG 6 cut(s) 48, 51, 223, 237, 452, 582
SmlI CTYRAG 2 cut(s) 732, 800
SmoI CTYRAG 2 cut(s) 732, 800
SpeI ACTAGT 1 cut(s) 830
SphI GCATGC 1 cut(s) 332
Sse9I AATT 2 cut(s) 342, 867
SsiI CCGC 3 cut(s) 248, 360, 429
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 4 cut(s) 389, 432, 663, 831
SstI GAGCTC 1 cut(s) 816
StyD4I CCNGG 1 cut(s) 757
StyI CCWWGG 3 cut(s) 30, 61, 651
TaaI ACNGT 2 cut(s) 462, 773
TaiI ACGT 3 cut(s) 615, 631, 848
TaqI TCGA 6 cut(s) 170, 182, 551, 689, 860, 924
TasI AATT 2 cut(s) 342, 867
TatI WGTACW 2 cut(s) 227, 835
TfiI GAWTC 1 cut(s) 751
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TseFI GTSAC 3 cut(s) 391, 445, 565
TseI GCWGC 3 cut(s) 71, 332, 587
Tsp45I GTSAC 3 cut(s) 391, 445, 565
TspDTI ATGAA 2 cut(s) 470, 834
TspGWI ACGGA 3 cut(s) 659, 729, 925
XagI CCTNNNNNAGG 1 cut(s) 621
XceI RCATGY 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 349
XspI CTAG 4 cut(s) 389, 432, 663, 831
ZraI GACGTC 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.