Rmu_sc0003600.1_g000024

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003600.1
OG0019345
Physical Location & Seq
Reverse (-)
110295 .. 110908
614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003600.1_g000024.1.cds

Sequence Viewer

Length: 351 bp
atggttatgcgcaccaatcttcatgtttctgcttggggatatgcaatattgtatgcagccacgctaattcgtctatggcctactacaaccaaatcttactctgcgttacagctagtgactgggtacgagcctaatatctcgcacttacgcatttttgggtgtgccatttatgtgcctattatgccgccacagcgtactaagatcgcagacactctgactgatgcgttttctgatgttgccaaagtgacgagatcacacatatctgctgcaaacgtgcctacaaggattgatgtcccgaataatggacagaacgccactcctgtgacaccaggagatggcgccattgtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

116

Amino Acids

12.6

Weight (kDa)

9.3

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 335
AciI CCGC 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 2 cut(s) 125, 196
AfiI CCNNNNNNNGG 2 cut(s) 302, 335
AjnI CCWGG 1 cut(s) 328
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 56, 266
AspLEI GCGC 2 cut(s) 12, 341
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 68, 253
BccI CCATC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 330
BfaI CTAG 2 cut(s) 113, 349
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 3 cut(s) 57, 185, 267
BlsI GCNGC 3 cut(s) 58, 186, 268
Bme1390I CCNGG 1 cut(s) 330
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 339
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 335
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 330
BseLI CCNNNNNNNGG 2 cut(s) 302, 335
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 2 cut(s) 68, 253
BshFI GGCC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 338
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 302, 335
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 201, 251
BspACI CCGC 1 cut(s) 185
BspANI GGCC 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 124
BssMI GATC 2 cut(s) 201, 251
BssNI GRCGYC 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 2 cut(s) 12, 341
BstKTI GATC 2 cut(s) 204, 254
BstMBI GATC 2 cut(s) 201, 251
BstMWI GCNNNNNNNGC 2 cut(s) 181, 190
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 68, 253
BsuRI GGCC 1 cut(s) 79
CfoI GCGC 2 cut(s) 12, 341
Csp6I GTAC 2 cut(s) 124, 195
CviAII CATG 1 cut(s) 23
CviJI RGCY 4 cut(s) 59, 79, 112, 130
CviKI_1 RGCY 4 cut(s) 59, 79, 112, 130
CviQI GTAC 2 cut(s) 124, 195
DdeI CTNAG 1 cut(s) 198
DinI GGCGCC 1 cut(s) 340
DpnI GATC 2 cut(s) 203, 253
DpnII GATC 2 cut(s) 201, 251
EcoRII CCWGG 1 cut(s) 328
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
FaeI CATG 1 cut(s) 26
FaiI YATR 8 cut(s) 8, 24, 42, 54, 76, 171, 182, 260
FaqI GGGAC 1 cut(s) 278
FatI CATG 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 57, 185, 267
Fsp4HI GCNGC 3 cut(s) 57, 185, 267
FspAI RTGCGCAY 1 cut(s) 11
FspBI CTAG 2 cut(s) 113, 349
FspI TGCGCA 1 cut(s) 11
GlaI GCGC 2 cut(s) 11, 340
GluI GCNGC 3 cut(s) 57, 185, 267
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 1 cut(s) 79
HhaI GCGC 2 cut(s) 12, 341
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 1 cut(s) 26
Hin6I GCGC 2 cut(s) 10, 339
HinP1I GCGC 2 cut(s) 10, 339
Hpy188I TCNGA 2 cut(s) 216, 232
Hpy188III TCNNGA 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 3 cut(s) 44, 56, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 190
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 1 cut(s) 26
HspAI GCGC 2 cut(s) 10, 339
KasI GGCGCC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 201, 251
LpnPI CCDG 4 cut(s) 105, 315, 333, 342
Lsp1109I GCAGC 2 cut(s) 68, 253
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 113, 349
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 4 cut(s) 105, 115, 244, 322
MalI GATC 2 cut(s) 203, 253
MboI GATC 2 cut(s) 201, 251
MboII GAAGA 1 cut(s) 11
MluCI AATT 1 cut(s) 66
Mly113I GGCGCC 1 cut(s) 339
MslI CAYNNNNRTG 2 cut(s) 170, 320
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 181, 190
NarI GGCGCC 1 cut(s) 339
NdeII GATC 2 cut(s) 201, 251
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 3 cut(s) 115, 244, 322
NsbI TGCGCA 1 cut(s) 11
OliI CACNNNNGTG 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 3 cut(s) 58, 186, 268
PluTI GGCGCC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 340
RsaI GTAC 2 cut(s) 125, 196
RsaNI GTAC 2 cut(s) 124, 195
RseI CAYNNNNRTG 2 cut(s) 170, 320
SatI GCNGC 3 cut(s) 57, 185, 267
Sau3AI GATC 2 cut(s) 201, 251
ScrFI CCNGG 1 cut(s) 330
SetI ASST 2 cut(s) 114, 276
SfaNI GCATC 1 cut(s) 211
SfoI GGCGCC 1 cut(s) 340
SmiMI CAYNNNNRTG 2 cut(s) 170, 320
Sse9I AATT 1 cut(s) 66
SsiI CCGC 1 cut(s) 185
SspDI GGCGCC 1 cut(s) 338
SspI AATATT 1 cut(s) 48
SspMI CTAG 2 cut(s) 113, 349
StyD4I CCNGG 1 cut(s) 328
TaiI ACGT 1 cut(s) 276
TasI AATT 1 cut(s) 66
TauI GCSGC 1 cut(s) 187
TseFI GTSAC 3 cut(s) 115, 244, 322
TseI GCWGC 2 cut(s) 56, 266
Tsp45I GTSAC 3 cut(s) 115, 244, 322
TspDTI ATGAA 1 cut(s) 11
Van91I CCANNNNNTGG 1 cut(s) 335
XspI CTAG 2 cut(s) 113, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.