Rmu_sc0002205.1_g000044

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002205.1
OG0019345
Physical Location & Seq
Forward (+)
191194 .. 192284
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002205.1_g000044.1.cds

Sequence Viewer

Length: 576 bp
atgtcactggggattgatgtagagcatccagttccttatgttcatacccaaaatagtctcgcggaagccgccattaagctactacaaatgatagctaagatattggttgtgcgcaccaatcttcctatttccgcttggggatatgcaatactgcatgcagccacactaagtcatctacaacccattaccacccaagcttattcggcattacagctaagagtagcagatactctacctgatgtgttttctaatactgctaaagtgtcgagatcacatatacttgctgtaaatgtgtctgcaaggattgacgtctcaaatattgaacgtaacgctgctcctgaggtaccaggagatggcgccactgcccatattggcagtgatgtgacatctatggtcataggtctcacgaggatgcgcgaacctatccccgagaatgtagagatctctgtgaattacactagtgcacatgggacgtgggaaagaagctctattatcatggttgatgtattcacatattcagtagcccgtgagattattgagaccgatgacatcgaatcacgctccattgatgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

191

Amino Acids

20.81

Weight (kDa)

5.16

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
Acc16I TGCGCA 1 cut(s) 113
Acc65I GGTACC 1 cut(s) 343
AccB1I GGYRCC 2 cut(s) 343, 356
AccB7I CCANNNNNTGG 1 cut(s) 353
AccII CGCG 2 cut(s) 62, 417
AciI CCGC 3 cut(s) 62, 69, 132
AcyI GRCGYC 2 cut(s) 309, 357
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 1 cut(s) 323
AhlI ACTAGT 1 cut(s) 458
AjiI CACGTC 1 cut(s) 474
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 5 cut(s) 79, 95, 197, 214, 486
AluI AGCT 5 cut(s) 79, 95, 197, 214, 486
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 4 cut(s) 62, 316, 407, 533
Alw44I GTGCAC 1 cut(s) 462
Ama87I CYCGRG 1 cut(s) 428
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 158, 332
Asp718I GGTACC 1 cut(s) 343
AspLEI GCGC 3 cut(s) 114, 359, 417
AvaI CYCGRG 1 cut(s) 428
AxyI CCTNAGG 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 466
BanI GGYRCC 2 cut(s) 343, 356
BauI CACGAG 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 170, 319
BccI CCATC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 4 cut(s) 62, 316, 407, 533
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 1 cut(s) 459
BfoI RGCGCY 1 cut(s) 360
BglII AGATCT 1 cut(s) 441
BisI GCNGC 3 cut(s) 69, 159, 333
BlsI GCNGC 3 cut(s) 70, 160, 334
Bme1390I CCNGG 1 cut(s) 348
BmeT110I CYCGRG 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 474
BmiI GGNNCC 2 cut(s) 345, 358
BmrFI CCNGG 1 cut(s) 348
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 2 cut(s) 34, 402
BmuI ACTGGG 1 cut(s) 17
BsaHI GRCGYC 2 cut(s) 309, 357
BsaI GGTCTC 2 cut(s) 407, 533
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 2 cut(s) 12, 29
Bse21I CCTNAGG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 25, 417
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 12, 29
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 2 cut(s) 170, 319
Bsh1236I CGCG 2 cut(s) 62, 417
BshNI GGYRCC 2 cut(s) 343, 356
BsiHKAI GWGCWC 1 cut(s) 466
BsiHKCI CYCGRG 1 cut(s) 428
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 4 cut(s) 62, 316, 407, 533
BsmBI CGTCTC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 484
Bso31I GGTCTC 2 cut(s) 407, 533
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 2 cut(s) 269, 441
BspACI CCGC 3 cut(s) 62, 69, 132
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 2 cut(s) 62, 417
BspLI GGNNCC 2 cut(s) 345, 358
BspT107I GGYRCC 2 cut(s) 343, 356
BspTNI GGTCTC 2 cut(s) 407, 533
BsrI ACTGG 2 cut(s) 12, 29
BssMI GATC 2 cut(s) 269, 441
BssNI GRCGYC 2 cut(s) 309, 357
BssSI CACGAG 1 cut(s) 406
Bst2BI CACGAG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 348
BstACI GRCGYC 2 cut(s) 309, 357
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 4 cut(s) 96, 167, 215, 339
BstF5I GGATG 2 cut(s) 25, 417
BstFNI CGCG 2 cut(s) 62, 417
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 3 cut(s) 114, 359, 417
BstKTI GATC 2 cut(s) 272, 444
BstMAI GTCTC 4 cut(s) 62, 316, 407, 533
BstMBI GATC 2 cut(s) 269, 441
BstMWI GCNNNNNNNGC 2 cut(s) 68, 203
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 2 cut(s) 62, 417
BstV1I GCAGC 2 cut(s) 170, 319
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
Bsu36I CCTNAGG 1 cut(s) 339
BtrI CACGTC 1 cut(s) 474
BtsCI GGATG 2 cut(s) 25, 417
BtsI GCAGTG 2 cut(s) 360, 382
BtsIMutI CAGTG 3 cut(s) 5, 360, 382
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 3 cut(s) 114, 359, 417
Csp6I GTAC 1 cut(s) 344
CviAII CATG 3 cut(s) 155, 467, 496
CviJI RGCY 8 cut(s) 68, 79, 95, 161, 197, 214, 486, 524
CviKI_1 RGCY 8 cut(s) 68, 79, 95, 161, 197, 214, 486, 524
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 4 cut(s) 96, 167, 215, 339
DinI GGCGCC 1 cut(s) 358
DpnI GATC 2 cut(s) 271, 443
DpnII GATC 2 cut(s) 269, 441
Eco31I GGTCTC 2 cut(s) 407, 533
Eco81I CCTNAGG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 346
EgeI GGCGCC 1 cut(s) 358
EheI GGCGCC 1 cut(s) 358
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 3 cut(s) 158, 470, 499
FaqI GGGAC 1 cut(s) 484
FatI CATG 3 cut(s) 154, 466, 495
Fnu4HI GCNGC 3 cut(s) 69, 159, 333
FokI GGATG 2 cut(s) 12, 424
Fsp4HI GCNGC 3 cut(s) 69, 159, 333
FspAI RTGCGCAY 1 cut(s) 113
FspBI CTAG 1 cut(s) 459
FspI TGCGCA 1 cut(s) 113
GlaI GCGC 3 cut(s) 113, 358, 416
GluI GCNGC 3 cut(s) 69, 159, 333
HaeII RGCGCY 1 cut(s) 360
HhaI GCGC 3 cut(s) 114, 359, 417
Hin1I GRCGYC 2 cut(s) 309, 357
Hin1II CATG 3 cut(s) 158, 470, 499
Hin6I GCGC 3 cut(s) 112, 357, 415
HinP1I GCGC 3 cut(s) 112, 357, 415
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 464
Hpy188III TCNNGA 3 cut(s) 267, 338, 406
Hpy8I GTNNAC 1 cut(s) 464
HpyCH4IV ACGT 3 cut(s) 309, 325, 473
HpyCH4V TGCA 5 cut(s) 146, 154, 158, 299, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 203
HpyF3I CTNAG 4 cut(s) 96, 167, 215, 339
HpySE526I ACGT 3 cut(s) 309, 325, 473
Hsp92I GRCGYC 2 cut(s) 309, 357
Hsp92II CATG 3 cut(s) 158, 470, 499
HspAI GCGC 3 cut(s) 112, 357, 415
KasI GGCGCC 1 cut(s) 356
KpnI GGTACC 1 cut(s) 347
Kzo9I GATC 2 cut(s) 269, 441
LmnI GCTCC 2 cut(s) 340, 566
LpnPI CCDG 5 cut(s) 42, 249, 333, 351, 360
Lsp1109I GCAGC 2 cut(s) 170, 319
LweI GCATC 2 cut(s) 34, 402
MaeI CTAG 1 cut(s) 459
MaeII ACGT 3 cut(s) 309, 325, 473
MaeIII GTNAC 3 cut(s) 3, 326, 382
MalI GATC 2 cut(s) 271, 443
MboI GATC 2 cut(s) 269, 441
MboII GAAGA 1 cut(s) 113
MflI RGATCY 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 1 cut(s) 451
Mly113I GGCGCC 1 cut(s) 357
MnlI CCTC 2 cut(s) 334, 402
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 2 cut(s) 62, 417
MwoI GCNNNNNNNGC 2 cut(s) 68, 203
NarI GGCGCC 1 cut(s) 357
NdeII GATC 2 cut(s) 269, 441
NlaIII CATG 3 cut(s) 158, 470, 499
NlaIV GGNNCC 2 cut(s) 345, 358
NmuCI GTSAC 2 cut(s) 3, 382
NsbI TGCGCA 1 cut(s) 113
NspI RCATGY 1 cut(s) 158
PaeI GCATGC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 554
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 3 cut(s) 70, 160, 334
PluTI GGCGCC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 345, 358
PsuI RGATCY 1 cut(s) 441
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 3 cut(s) 69, 159, 333
Sau3AI GATC 2 cut(s) 269, 441
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 466
SfaNI GCATC 2 cut(s) 34, 402
SfoI GGCGCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 410
SpeI ACTAGT 1 cut(s) 458
SphI GCATGC 1 cut(s) 158
Sse9I AATT 1 cut(s) 451
SsiI CCGC 3 cut(s) 62, 69, 132
SspDI GGCGCC 1 cut(s) 356
SspI AATATT 1 cut(s) 319
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 346
TaiI ACGT 3 cut(s) 312, 328, 476
TaqI TCGA 2 cut(s) 266, 552
TaqII GACCGA 1 cut(s) 557
TasI AATT 1 cut(s) 451
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 3 cut(s) 12, 367, 382
TseFI GTSAC 2 cut(s) 3, 382
TseI GCWGC 2 cut(s) 158, 332
Tsp45I GTSAC 2 cut(s) 3, 382
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 3 cut(s) 12, 367, 382
Van91I CCANNNNNTGG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 462
XceI RCATGY 1 cut(s) 158
XspI CTAG 1 cut(s) 459
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.