Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011921.1

Orthogroup ID

OG0019345

Physical Location & Seq

Genomic Coordinates Forward (+)

16640 .. 16957

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011921.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgtttagcaagaatgataggaattgttgtggcctgtccccactatgtctcatctcgatccctgttaaagtgacgagatcacacaaatatgctgcaaacattcctgcaaggaagtacgtccctacgagaggacgtagctccaccctacacggaaataaacatggcgccaatgccaaaaagagtggcactcttgcgttacaagccatggcccaagctaggatgcatgggaggcccgtgggttcgaaggacactttgacacattccaatcatttgatcatcaagactcaaaatccttcttatgagaatcttccgggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

105

Amino Acids

11.42

Weight (kDa)

10.46

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019345)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361991 RchiOBHm_Chr2g0131301
rosa_multiflora	Rmu_sc0001198.1_g000002 Rmu_sc0002205.1_g000044 Rmu_sc0003600.1_g000024 Rmu_sc0005564.1_g000004 Rmu_sc0011921.1_g000005
rosa_roxburghii	Rroxscaffold_6G00415760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	128, 216
AluBI	AGCT	2 cut(s)	138, 215
AluI	AGCT	2 cut(s)	138, 215
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	3 cut(s)	31, 207, 230
ApeKI	GCWGC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	208, 231
AsuC2I	CCSGG	1 cut(s)	312
AsuII	TTCGAA	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	79
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	208, 231
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
Bpu14I	TTCGAA	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 216
BseDI	CCNNGG	2 cut(s)	204, 234
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	128, 216
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	3 cut(s)	33, 209, 232
BshNI	GGYRCC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	22, 104
BslI	CCNNNNNNNGG	2 cut(s)	128, 216
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	2 cut(s)	22, 104
BsnI	GGCC	3 cut(s)	33, 209, 232
Bsp119I	TTCGAA	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	57, 77, 273
Bsp19I	CCATGG	1 cut(s)	204
BspANI	GGCC	3 cut(s)	33, 209, 232
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	204, 234
BssMI	GATC	3 cut(s)	57, 77, 273
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	165
BstBI	TTCGAA	1 cut(s)	242
BstDSI	CCRYGG	2 cut(s)	204, 234
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	60, 80, 276
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	3 cut(s)	57, 77, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 229
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	33, 209, 232
BtgI	CCRYGG	2 cut(s)	204, 234
BtsCI	GGATG	1 cut(s)	225
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	208, 231
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	3 cut(s)	161, 205, 224
CviJI	RGCY	6 cut(s)	33, 138, 203, 209, 215, 232
CviKI_1	RGCY	6 cut(s)	33, 138, 203, 209, 215, 232
CviQI	GTAC	1 cut(s)	115
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	3 cut(s)	59, 79, 275
DpnII	GATC	3 cut(s)	57, 77, 273
Eco130I	CCWWGG	1 cut(s)	204
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	225
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	164, 208, 227
FaiI	YATR	6 cut(s)	46, 90, 162, 206, 225, 300
FaqI	GGGAC	2 cut(s)	22, 104
FatI	CATG	3 cut(s)	160, 204, 223
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	33, 209, 232
HapII	CCGG	1 cut(s)	311
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	3 cut(s)	164, 208, 227
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	283, 304
HpaII	CCGG	1 cut(s)	311
Hpy188III	TCNNGA	2 cut(s)	55, 280
HpyAV	CCTTC	2 cut(s)	238, 303
HpyCH4IV	ACGT	2 cut(s)	117, 133
HpyCH4V	TGCA	3 cut(s)	95, 107, 223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 229
HpySE526I	ACGT	2 cut(s)	117, 133
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	164, 208, 227
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	57, 77, 273
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	3 cut(s)	47, 75, 117
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	2 cut(s)	117, 133
MaeIII	GTNAC	2 cut(s)	70, 195
MalI	GATC	3 cut(s)	59, 79, 275
MboI	GATC	3 cut(s)	57, 77, 273
MboII	GAAGA	1 cut(s)	299
MluCI	AATT	1 cut(s)	22
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	2 cut(s)	122, 222
Mph1103I	ATGCAT	1 cut(s)	225
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	200, 229
NarI	GGCGCC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	3 cut(s)	57, 77, 273
NlaIII	CATG	3 cut(s)	164, 208, 227
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	225
NspV	TTCGAA	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	277
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	208, 231
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	3 cut(s)	57, 77, 273
Sau96I	GGNCC	2 cut(s)	208, 231
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	4 cut(s)	120, 136, 140, 217
SfaNI	GCATC	1 cut(s)	210
SfoI	GGCGCC	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	1 cut(s)	22
SspDI	GGCGCC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	204
TaiI	ACGT	2 cut(s)	120, 136
TaqI	TCGA	2 cut(s)	56, 242
TasI	AATT	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	165
XagI	CCTNNNNNAGG	1 cut(s)	126
XspI	CTAG	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.