Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005564.1

Orthogroup ID

OG0019345

Physical Location & Seq

Genomic Coordinates Forward (+)

11676 .. 16752

Gene Structure 5077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005564.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggatattgcaatgggcttgatgttggacatcacattcccatgtacacacccaattggtcttgcggaaacgactacgatggtcgtccgaacattggcgatctctttaccgctagatttgcgggttgtcactttgatgcgacagtcttcctgtcgttcggggaagataagaacacagatgttcagtaggaacgacaggaattgtcgtggcctgtccccactatgtctcatctcgatccctattacagtgacgagatcacacatatatgctgcaaacatgcctgcaaggaaggacgttcctacgagaggacgtagcgccaccctacacggaggtaggcatggcgccaatgccaaagagagtggcactctggcattacaggccatggccccagctaggatgcgtggagacgcccgtgggcttctcacaaaacgccctagaatcgactacgatgagacatattctctggtaatggatgtcattgcactccactaccctgtcagtttgatgcttaggcattttgacaaggtcaagccttcaagcacccccatgatcgtccgtagtcttgatcctgaaaaggatcctctccgtcgaaaggatgatgacgaagatgtgctagaagcagaagtgccttacttacttctaatgtctcagcgaggtgatcttcacgcggcgcatggtggcttgttagaggtggtcttggcccgagcctgggcttgggcggcatggaagttatggaaagaaggcgcagggctaaagttaatggatacaacactaggcatctcattcaatacggatcaagtgttaagatgcatccatgttgatctacgatatgttgaggataatgcagccaatcgatccaccatgtcagatgcaatatctctgtcaataactgaaagcttgccattacctgcacctacaaagcgtgcatttttggcagaaggaatgcacctattgctggtaaaatcgggacggaaccagaaattttatcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

330

Amino Acids

36.74

Weight (kDa)

9.41

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019345)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361991 RchiOBHm_Chr2g0131301
rosa_multiflora	Rmu_sc0001198.1_g000002 Rmu_sc0002205.1_g000044 Rmu_sc0003600.1_g000024 Rmu_sc0005564.1_g000004 Rmu_sc0011921.1_g000005
rosa_roxburghii	Rroxscaffold_6G00415760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	916
AccB1I	GGYRCC	1 cut(s)	341
AccII	CGCG	1 cut(s)	668
AciI	CCGC	5 cut(s)	65, 110, 121, 668, 719
AclWI	GGATC	6 cut(s)	229, 560, 572, 585, 801, 849
AcsI	RAATTY	1 cut(s)	980
AcyI	GRCGYC	2 cut(s)	342, 408
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	8 cut(s)	94, 305, 393, 592, 708, 709, 714, 955
AgsI	TTSAA	2 cut(s)	537, 787
AjnI	CCWGG	1 cut(s)	707
AluBI	AGCT	2 cut(s)	392, 897
AluI	AGCT	2 cut(s)	392, 897
Alw26I	GTCTC	4 cut(s)	230, 399, 446, 651
AlwI	GGATC	6 cut(s)	229, 560, 572, 585, 801, 849
Ama87I	CYCGRG	1 cut(s)	702
AoxI	GGCC	4 cut(s)	208, 378, 384, 699
ApeKI	GCWGC	2 cut(s)	269, 845
ApoI	RAATTY	1 cut(s)	980
AspLEI	GCGC	4 cut(s)	317, 344, 673, 746
AspS9I	GGNCC	2 cut(s)	385, 700
AsuHPI	GGTGA	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	702
BamHI	GGATCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	256, 857
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	709
BciVI	GTATCC	1 cut(s)	757
BcoDI	GTCTC	4 cut(s)	230, 399, 446, 651
BfaI	CTAG	5 cut(s)	113, 393, 435, 614, 773
BfoI	RGCGCY	2 cut(s)	318, 345
BfuAI	ACCTGC	1 cut(s)	916
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	4 cut(s)	270, 669, 720, 846
BlsI	GCNGC	4 cut(s)	271, 670, 721, 847
Bme1390I	CCNGG	1 cut(s)	709
BmeT110I	CYCGRG	1 cut(s)	702
BmgT120I	GGNCC	2 cut(s)	385, 700
BmiI	GGNNCC	4 cut(s)	343, 387, 579, 974
BmrFI	CCNGG	1 cut(s)	709
BmsI	GCATC	7 cut(s)	126, 387, 495, 786, 797, 819, 859
BpiI	GAAGAC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
Bpu10I	CCTNAGC	1 cut(s)	509
Bsa29I	ATCGAT	1 cut(s)	853
BsaHI	GRCGYC	2 cut(s)	342, 408
BsaJI	CCNNGG	3 cut(s)	381, 412, 708
Bsc4I	CCNNNNNNNGG	8 cut(s)	94, 305, 393, 592, 708, 709, 714, 955
Bse3DI	GCAATG	2 cut(s)	18, 477
BseBI	CCWGG	1 cut(s)	709
BseCI	ATCGAT	1 cut(s)	853
BseDI	CCNNGG	3 cut(s)	381, 412, 708
BseGI	GGATG	4 cut(s)	402, 478, 601, 810
BseLI	CCNNNNNNNGG	8 cut(s)	94, 305, 393, 592, 708, 709, 714, 955
BseMI	GCAATG	2 cut(s)	18, 477
BseMII	CTCAG	1 cut(s)	662
BseXI	GCAGC	2 cut(s)	256, 857
BseYI	CCCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	894
Bsh1236I	CGCG	1 cut(s)	668
BshFI	GGCC	4 cut(s)	210, 380, 386, 701
BshNI	GGYRCC	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	853
BsiHKCI	CYCGRG	1 cut(s)	702
BslFI	GGGAC	2 cut(s)	199, 981
BslI	CCNNNNNNNGG	8 cut(s)	94, 305, 393, 592, 708, 709, 714, 955
BsmAI	GTCTC	4 cut(s)	230, 399, 446, 651
BsmBI	CGTCTC	1 cut(s)	399
BsmFI	GGGAC	2 cut(s)	199, 981
BsmI	GAATGC	1 cut(s)	948
BsnI	GGCC	4 cut(s)	210, 380, 386, 701
BsoBI	CYCGRG	1 cut(s)	702
Bsp1407I	TGTACA	1 cut(s)	44
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	5 cut(s)	65, 110, 121, 668, 719
BspANI	GGCC	4 cut(s)	210, 380, 386, 701
BspCNI	CTCAG	1 cut(s)	661
BspDI	ATCGAT	1 cut(s)	853
BspFNI	CGCG	1 cut(s)	668
BspLI	GGNNCC	4 cut(s)	343, 387, 579, 974
BspMI	ACCTGC	1 cut(s)	916
BspPI	GGATC	6 cut(s)	229, 560, 572, 585, 801, 849
BspT107I	GGYRCC	1 cut(s)	341
BsrDI	GCAATG	2 cut(s)	18, 477
BsrGI	TGTACA	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	381, 412, 708
BssNI	GRCGYC	2 cut(s)	342, 408
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	709
Bst4CI	ACNGT	2 cut(s)	144, 247
BstACI	GRCGYC	2 cut(s)	342, 408
BstAPI	GCANNNNNTGC	1 cut(s)	952
BstAUI	TGTACA	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	282, 899, 924
BstDEI	CTNAG	2 cut(s)	509, 648
BstDSI	CCRYGG	2 cut(s)	381, 412
BstENI	CCTNNNNNAGG	1 cut(s)	303
BstF5I	GGATG	4 cut(s)	402, 478, 601, 810
BstFNI	CGCG	1 cut(s)	668
BstH2I	RGCGCY	2 cut(s)	318, 345
BstHHI	GCGC	4 cut(s)	317, 344, 673, 746
BstMAI	GTCTC	4 cut(s)	230, 399, 446, 651
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 377, 719, 932, 952
BstNI	CCWGG	1 cut(s)	709
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	707
BstUI	CGCG	1 cut(s)	668
BstV1I	GCAGC	2 cut(s)	256, 857
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
Bsu15I	ATCGAT	1 cut(s)	853
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	4 cut(s)	210, 380, 386, 701
BsuTUI	ATCGAT	1 cut(s)	853
BtgI	CCRYGG	2 cut(s)	381, 412
BtsCI	GGATG	4 cut(s)	402, 478, 601, 810
BtsIMutI	CAGTG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	916
Cac8I	GCNNGC	3 cut(s)	282, 899, 924
CfoI	GCGC	4 cut(s)	317, 344, 673, 746
Cfr13I	GGNCC	2 cut(s)	385, 700
ClaI	ATCGAT	1 cut(s)	853
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	45
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	9 cut(s)	42, 277, 338, 382, 547, 674, 723, 815, 862
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	509, 648
DinI	GGCGCC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	702
EcoNI	CCTNNNNNAGG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	707
EcoT14I	CCWWGG	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	812
EgeI	GGCGCC	1 cut(s)	343
EheI	GGCGCC	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	9 cut(s)	45, 280, 341, 385, 550, 677, 726, 818, 865
FaqI	GGGAC	2 cut(s)	199, 981
FatI	CATG	9 cut(s)	41, 276, 337, 381, 546, 673, 722, 814, 861
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	270, 669, 720, 846
FokI	GGATG	4 cut(s)	409, 485, 608, 797
Fsp4HI	GCNGC	4 cut(s)	270, 669, 720, 846
FspBI	CTAG	5 cut(s)	113, 393, 435, 614, 773
GlaI	GCGC	4 cut(s)	316, 343, 672, 745
GluI	GCNGC	4 cut(s)	270, 669, 720, 846
GsaI	CCCAGC	1 cut(s)	392
HaeII	RGCGCY	2 cut(s)	318, 345
HaeIII	GGCC	4 cut(s)	210, 380, 386, 701
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	4 cut(s)	317, 344, 673, 746
Hin1I	GRCGYC	2 cut(s)	342, 408
Hin1II	CATG	9 cut(s)	45, 280, 341, 385, 550, 677, 726, 818, 865
Hin6I	GCGC	4 cut(s)	315, 342, 671, 744
HinP1I	GCGC	4 cut(s)	315, 342, 671, 744
HindIII	AAGCTT	1 cut(s)	895
HinfI	GANTC	1 cut(s)	438
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	2 cut(s)	89, 868
Hpy188III	TCNNGA	4 cut(s)	232, 563, 569, 966
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	1 cut(s)	591
HpyAV	CCTTC	4 cut(s)	283, 543, 734, 932
HpyCH4III	ACNGT	2 cut(s)	144, 247
HpyCH4IV	ACGT	2 cut(s)	294, 310
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 377, 719, 932, 952
HpyF3I	CTNAG	2 cut(s)	509, 648
HpySE526I	ACGT	2 cut(s)	294, 310
Hsp92I	GRCGYC	2 cut(s)	342, 408
Hsp92II	CATG	9 cut(s)	45, 280, 341, 385, 550, 677, 726, 818, 865
HspAI	GCGC	4 cut(s)	315, 342, 671, 744
KasI	GGCGCC	1 cut(s)	341
Lsp1109I	GCAGC	2 cut(s)	256, 857
LweI	GCATC	7 cut(s)	126, 387, 495, 786, 797, 819, 859
MaeI	CTAG	5 cut(s)	113, 393, 435, 614, 773
MaeII	ACGT	2 cut(s)	294, 310
MaeIII	GTNAC	2 cut(s)	127, 247
MboII	GAAGA	4 cut(s)	138, 175, 617, 653
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	1 cut(s)	577
MluCI	AATT	3 cut(s)	54, 199, 980
Mly113I	GGCGCC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	6 cut(s)	299, 323, 591, 647, 682, 829
Mph1103I	ATGCAT	1 cut(s)	812
MseI	TTAA	2 cut(s)	758, 803
MslI	CAYNNNNRTG	4 cut(s)	40, 134, 264, 545
MspR9I	CCNGG	1 cut(s)	709
MunI	CAATTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	1 cut(s)	709
MvnI	CGCG	1 cut(s)	668
MwoI	GCNNNNNNNGC	5 cut(s)	118, 377, 719, 932, 952
NarI	GGCGCC	1 cut(s)	342
NcoI	CCATGG	1 cut(s)	381
NlaIII	CATG	9 cut(s)	45, 280, 341, 385, 550, 677, 726, 818, 865
NlaIV	GGNNCC	4 cut(s)	343, 387, 579, 974
NmuCI	GTSAC	2 cut(s)	127, 247
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	1 cut(s)	280
PctI	GAATGC	1 cut(s)	948
PfeI	GAWTC	1 cut(s)	438
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	4 cut(s)	271, 670, 721, 847
PluTI	GGCGCC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	707
PspFI	CCCAGC	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	707
PspN4I	GGNNCC	4 cut(s)	343, 387, 579, 974
PspPI	GGNCC	2 cut(s)	385, 700
PsuI	RGATCY	1 cut(s)	577
PsyI	GACNNNGTC	1 cut(s)	524
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	4 cut(s)	40, 134, 264, 545
SaqAI	TTAA	2 cut(s)	758, 803
SatI	GCNGC	4 cut(s)	270, 669, 720, 846
Sau96I	GGNCC	2 cut(s)	385, 700
ScrFI	CCNGG	1 cut(s)	709
SfaNI	GCATC	7 cut(s)	126, 387, 495, 786, 797, 819, 859
SfoI	GGCGCC	1 cut(s)	343
SmiMI	CAYNNNNRTG	4 cut(s)	40, 134, 264, 545
Sse9I	AATT	3 cut(s)	54, 199, 980
SsiI	CCGC	5 cut(s)	65, 110, 121, 668, 719
SspDI	GGCGCC	1 cut(s)	341
SspMI	CTAG	5 cut(s)	113, 393, 435, 614, 773
StyD4I	CCNGG	1 cut(s)	707
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	144, 247
TaiI	ACGT	2 cut(s)	297, 313
TaqI	TCGA	4 cut(s)	233, 441, 589, 853
TasI	AATT	3 cut(s)	54, 199, 980
TatI	WGTACW	1 cut(s)	44
TauI	GCSGC	2 cut(s)	671, 722
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	2 cut(s)	758, 803
Tru9I	TTAA	2 cut(s)	758, 803
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	2 cut(s)	127, 247
TseI	GCWGC	2 cut(s)	269, 845
Tsp45I	GTSAC	2 cut(s)	127, 247
TspGWI	ACGGA	5 cut(s)	342, 545, 575, 806, 985
TspRI	CASTG	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	524
XagI	CCTNNNNNAGG	1 cut(s)	303
XapI	RAATTY	1 cut(s)	980
XceI	RCATGY	1 cut(s)	280
XspI	CTAG	5 cut(s)	113, 393, 435, 614, 773
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.