Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0019345

Physical Location & Seq

Genomic Coordinates Forward (+)

37929807 .. 37933181

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGATATTGCAATGGGTTTGATGTTGGACATCACATTCCTATGTACACACCCAATTGGTCTCGCGGAAACGACTACGATGGTAGTCCGAACATTGGTAATGCGCACCAATCTTCTTACATCCACTTGGGGTGATGCGATATCGCATGCAGCCATGCTAATTCGTCTACAACCTACCGCCACTCAATGTACCTATGCGTTACGCCTAGTGACCGGGTACACGTATTTTGTACTTACGCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

81

Amino Acids

9.01

Weight (kDa)

6.8

Isoelectric Point (pI)

24.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019345)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361991 RchiOBHm_Chr2g0131301
rosa_multiflora	Rmu_sc0001198.1_g000002 Rmu_sc0002205.1_g000044 Rmu_sc0003600.1_g000024 Rmu_sc0005564.1_g000004 Rmu_sc0011921.1_g000005
rosa_roxburghii	Rroxscaffold_6G00415760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	166
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	65, 177
AfaI	GTAC	4 cut(s)	46, 190, 218, 231
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	124
BpuMI	CCSGG	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	44
BspACI	CCGC	2 cut(s)	65, 177
BspFNI	CGCG	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	119
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	212
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	105
Csp6I	GTAC	4 cut(s)	45, 189, 217, 230
CviAII	CATG	2 cut(s)	146, 154
CviJI	RGCY	1 cut(s)	152
CviKI_1	RGCY	1 cut(s)	152
CviQI	GTAC	4 cut(s)	45, 189, 217, 230
Eco31I	GGTCTC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	141
EcoRV	GATATC	1 cut(s)	141
FaeI	CATG	2 cut(s)	149, 157
FaiI	YATR	4 cut(s)	43, 147, 155, 195
FatI	CATG	2 cut(s)	145, 153
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	150
FspAI	RTGCGCAY	1 cut(s)	104
FspBI	CTAG	1 cut(s)	206
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	150
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	149, 157
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	3 cut(s)	47, 167, 219
Hpy188I	TCNGA	1 cut(s)	89
Hpy8I	GTNNAC	3 cut(s)	47, 167, 219
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	11, 149
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	149, 157
HspAI	GCGC	1 cut(s)	103
LpnPI	CCDG	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	198, 208
MboII	GAAGA	1 cut(s)	104
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	2 cut(s)	54, 159
MmeI	TCCRAC	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	40
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	65
NciI	CCSGG	1 cut(s)	214
NlaIII	CATG	2 cut(s)	149, 157
NmuCI	GTSAC	1 cut(s)	208
NsbI	TGCGCA	1 cut(s)	104
NspI	RCATGY	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	222
RsaI	GTAC	4 cut(s)	46, 190, 218, 231
RsaNI	GTAC	4 cut(s)	45, 189, 217, 230
RseI	CAYNNNNRTG	1 cut(s)	40
SatI	GCNGC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	3 cut(s)	175, 194, 224
SfaNI	GCATC	1 cut(s)	124
SgeI	CNNG	9 cut(s)	74, 76, 138, 158, 166, 218, 225, 226, 232
SmiMI	CAYNNNNRTG	1 cut(s)	40
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	2 cut(s)	54, 159
SsiI	CCGC	2 cut(s)	65, 177
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	212
TaiI	ACGT	1 cut(s)	224
TasI	AATT	2 cut(s)	54, 159
TatI	WGTACW	2 cut(s)	44, 229
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	208
XceI	RCATGY	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.