Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001314.1

Orthogroup ID

OG0002799

Physical Location & Seq

Genomic Coordinates Forward (+)

32427 .. 55815

Gene Structure 23389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4899 bp

atggatagcaacgatgggagtcctcctcacggtggagatcctgcaatggatgcaggggattggaggaaccaattgcaggcggattcgtggaaaagaattgtcaataagatgttactttacgccttgaaagaaaccctctctctctccctctctgcaaaaccgaagcagcaggagatggacgatttcacgaacctgatctgccctaattctccatccgtgtgggacgggaatggactttccaagtgctacggcaacatatatccttttcaactccttctgttttgctcttttggtcctaatatggtgactcttgctgtgattttcgtactcggaatcactcgaaggaccggcagaagagcctggaggatgaacttttccgagaggtttttcttgcacgtgcttcctgccgtcggagcttgttcagcatttttcgacattgctttacttttaaagaaaggtcgtggtggtgtcttggttgcaaaacatgaatggttgttcagatgttcccagtttgctgtctggacagttgtcatactcttctcaaggtgtttcaatgcttgccatatttttggcaatcgcatcttgtgtttctggtggcttgtaaaaatgcttttggcaacacttcatttgttcacaacatatccttcattcaaggtcttgttatctcttaaggagattggtactgtttcattggacgtcatttttgttcaatggaagattcactactttctgctgacatggacctcgaggaaggttctctcaaggactctatcgatcacttctgtgatgagtcatggtgtcacaaagcagcttgaatttgaagatttgcttcaacttcccactgatatggacccttgttcctgtcatgatgcattatttagctgttggaaatcccaacagagtagttgccctgatccatccctgtttagggcaatctgttctgcatatggatggccatacgttcatctcggcttgttaaaggtacttaatgattctgttggttttgctggaccgttgcttctcaataagctaattcgcttccttcaacaaggttcgcagaatttggatggctatgttcttgctgtatccttgggcctcatatctatctttaaatcgtttttggatacacaatatacttttcatctttcaaaattgaagttaaagctacgatctagtatcatgacagttatatatcagaagtgcctctgtgtcaacctagcagagcgatcaaagtttaccgagggggaaattcagacattcatggccatagattctgatcgcattgtcaacttaagtaacactctccatgatatgtggagcttgcctttacaaattggggtggctttgttccttttgtatacacaagtcaaatttgcatttgtttctgggcttgcaattaccatcgcattaataccagtgaataaatggatatctacattgattgcaagagctacagtgaaaatgatgaagcagaaggatgagaggatcagaaggacgggggaacttttgacatatatccgcactttgaaaatgtatggttgggagctcttgttttctagctggttgatggagacaagattatcagaagttatgcacttaactacacggaagtacttggatgcctggtgtgtatttttttgggccacaacaccaactcttttttctctttgtacatttggacttttcacattgatggggcatcaacttgatgctgcaacggtcttcacttgtgttgctctgtttaatactttgatatctcctctaaactcatttccgtgggtcattaatgggttaattgatgctgtcatatctgtcagacggttgagcaggttcctgtcttgctctgagcgcaagtcaaagctggaaaagacagctgatgcatcttcaccatatttctccaatgatcagtgtgaatttacctttgaagatatggctgttgtgtttgatgattcatcttgttcctggtcaagcagcgatgaaaaggaattgaatttggtgctgaatcatgtaactctaggtattccaaagggttccttcattgcagtaattggagaggttggttcaggtaaatcatcattgttgaattccatattgggggaaatgcaacttgtccatggatcagtatattcttgtggatctatagcatatgtaccacaggtcccatggattctgtctggaacaatccgtgacaatatactgtttggaaagcaatacgatcccaaaagatacacagatactttagaggcaagtgctttagatgttgatatttcaataatggttggaggtgacatggcttatattggagaaaaaggagtcaacttgtcaggtggacagagagctcgaattgctctggcaagggctatttataatggctccgatatgtttattcttgatgatgtcctcagtgcagttgatgcaagagttgctcgttgtattttatacaatgcaattttgggtccactaatgaaaaagcaaactcgtgtgctttgtacgcataacgttcaggcaatatcttctgctgatacaattgtggttatggaaaaaggacatgtaaagtgggtgggaccttctgcttgtttgccagcttcttcatattcagcattctctcaactgaatgaatttgataaattcttactgaatgaaggaaaagagtgcaatgtacctgcagattctctcacaaaagaccaacaaaaccttcccttagagaaagatattgtgcctgcttcagagggaagacaagatattattgaagttgaggcacggaaagagggaaaagtagaactttctgtctacaagaattatgccacgtttactggttggttcatttcggttgtaatatttctatcagcaatcctaatgcaagcttctcgtaatggaaatgatctgtggctgtcatattgggttgatacaacaggaaagagtcagaaaggatactctacatccttttatctggtaatactgtgcatcttttgtactgcaaattcagttcttacattagtgagggccttctcatttgcatatggcggcgtacgagctgcagttaaggtgcatgatacactgctgaaaaggcttatcaatgcacctgttcaattctttgatcagacaccaggtggaaggatactaaacaggctatcttcagatctatacacaattgatgattctcttcccttcattctcaacattctcctagctaatttcgttggtcttctgggaattgcaatagttttgtcatatgttcaggtcttcttcttgcttttgctattgccgttttggtatatttacaccaaacttcaggccaacacctggaaagattttataagacatagtttgccttgtgaaatagttcggctcggggcgcgacggagcggcggaggttgccggaaggacgccaggggtcgggcggagaggtctgcagtcggtggagtcgctggcgacgtcgttgcagcgctgcccagaaaacctgcagttgcaggtcgggttgctgcccagaacctgcaactcggacctcctctgacctcgaacgctgcccagacccgtccgccaagcctccggcttccgtccgccaagccccgagccgccgtcgccgcctggaacgccgctgctgcgtcgccgtccttccgtccgccaagcctccggcttccgtccgccaagccccgagccgccgtcgccgcctggaacgccgctgctgcgtcgccgtcaacatctcgagaattgcgaaggctggacagtgtgtctcggtctcccatatatacatccttcacagagacacttgatggatcatcaactatacgggcatttaagtctgaggacttctttttggccagattcactgaccaggtgaaattgtatcaacaaacttcctacacagagttaaatgcaagtttgtggctttccctacgtcttcagttgtcagcagcatttatcatctcatttgttgctattatggctgttcttggatctcatggtggattaccaatcggtttcagtaccccagggctggttggtttggctctatcttatgcagctccggttgtaaatttactgggaagctttttgacaagtttcactgaaacagagaaggaaatggtttccattgaaagagctcttgagtatatggaggttcctcaagaagaagttgatggacttcaatctttaaactgcaattggccatttcaaggacggattgaattccaaaatgttaccttgagatacaagccatcttttccagctgcactttgtgatattagttttactattgacggagggatgcaggttggtattgttggaaggacaggagctggaaaatctagtgttttgaatgcccttttccgcctcacaccaatatgcacaggatgtattcttgtggatgatataaacatagctaatgctcctatcagggatcttcgtgggcatttctctgttgttcctcagactccatttttatttgaaggatcattaagggacaatctggatccattcaggctgagtgatgactataaaatttggaaggctttggagaggtgccatgtcaaagaggaagtagaagcagcaggaggtttagatattcacctaagcgaatctaggatgtccttttctgtagggcaacggcagcttctttgccttgcacgtgcactgctcaaatcttcaaaggtgctttgtttggatgaatgcacagctaatgtggacactcaaacagcatctaccttacaaaaaaccatatctagtgaatgcagtggcatgacagttatcacaattgctcatcgtatttccaccattctgaatatggataatgtcctgatcctcgaccatggtatcctggttgaacaaggaaatccgcaggctctcctacaaaatgagttctccagattttccagttttgctaaagcatctacaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1632

Amino Acids

180.92

Weight (kDa)

8.72

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	324 - 588	3.2e-20	ABC transporter transmembrane region
ABC_tran	PF00005	667 - 800	5.6e-16	ABC transporter
ABC_membrane	PF00664	945 - 1099	2.7e-22	ABC transporter transmembrane region
ABC_membrane	PF00664	1234 - 1323	2.7e-11	ABC transporter transmembrane region
ABC_tran	PF00005	1414 - 1559	2.3e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07680 AT2G07680 AT2G07680 AT2G07680 AT2G07680 AT2G07680
fragaria_vesca	FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590 FvH4_6g28590
malus_domestica	MD09G1225000.v1.1
prunus_persica	Prupe.3G098500_v2.0.a1 Prupe.3G098500_v2.0.a1 Prupe.3G098500_v2.0.a1 Prupe.3G098500_v2.0.a1
pyrus_communis	pycom09g14470 pycom09g14480 pycom09g14490
rosa_chinensis	RchiOBHm_Chr2g0132931
rosa_laevigata	RLG00000019292
rosa_multiflora	Rmu_sc0001314.1_g000005
rosa_roxburghii	Rroxscaffold_2G00111610
rosa_rugosa	Rorug02G0308600
rosa_samantha	Rh2AG360900 Rh2BG366800 Rh2CG344200 Rh2DG383800
rosa_wichuraiana	Rw2G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2367, 3317
AatII	GACGTC	2 cut(s)	699, 3438
AbsI	CCTCGAGG	1 cut(s)	745
Acc36I	ACCTGC	6 cut(s)	1818, 2671, 3461, 3469, 3501, 4261
AccB1I	GGYRCC	1 cut(s)	4521
AccB7I	CCANNNNNTGG	1 cut(s)	3303
AccBSI	CCGCTC	1 cut(s)	3366
AccI	GTMKAC	2 cut(s)	1358, 2790
AccII	CGCG	1 cut(s)	3358
AclI	AACGTT	1 cut(s)	2499
AcoI	YGGCCR	4 cut(s)	953, 1263, 3819, 4166
AcuI	CTGAAG	4 cut(s)	2709, 3120, 3275, 3887
AcvI	CACGTG	2 cut(s)	397, 4628
AcyI	GRCGYC	3 cut(s)	696, 3387, 3435
AdeI	CACNNNGTG	2 cut(s)	3110, 4238
AfeI	AGCGCT	1 cut(s)	3447
AflII	CTTAAG	2 cut(s)	668, 1291
AflIII	ACRYGT	1 cut(s)	2548
AhdI	GACNNNNNGTC	1 cut(s)	3730
AjuI	GAANNNNNNNTTGG	6 cut(s)	1645, 1677, 2075, 2107, 2679, 2711
AleI	CACNNNNGTG	1 cut(s)	782
Alw21I	GWGCWC	4 cut(s)	1548, 2341, 4105, 4633
Alw26I	GTCTC	4 cut(s)	1565, 3738, 3744, 3758
Alw44I	GTGCAC	1 cut(s)	4629
AlwNI	CAGNNNCTG	2 cut(s)	3493, 4298
Ama87I	CYCGRG	5 cut(s)	745, 3350, 3570, 3654, 3705
Aor51HI	AGCGCT	1 cut(s)	3447
AoxI	GGCC	8 cut(s)	953, 1093, 1263, 1641, 3003, 3294, 3819, 4166
ApaLI	GTGCAC	1 cut(s)	4629
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AseI	ATTAAT	2 cut(s)	1409, 1785
Asp700I	GAANNNNTTC	1 cut(s)	3342
AspLEI	GCGC	3 cut(s)	1851, 3358, 3448
AsuHPI	GGTGA	5 cut(s)	316, 1878, 2297, 3850, 4559
AvaI	CYCGRG	5 cut(s)	745, 3350, 3570, 3654, 3705
AvaII	GGWCC	9 cut(s)	293, 345, 741, 850, 1010, 2158, 2456, 2564, 3503
BaeGI	GKGCMC	1 cut(s)	4633
BaeI	ACNNNNGTAYC	4 cut(s)	2514, 2547, 4795, 4828
BalI	TGGCCA	4 cut(s)	955, 1265, 3821, 4168
BamHI	GGATCC	1 cut(s)	4471
BanI	GGYRCC	1 cut(s)	4521
BanII	GRGCYC	3 cut(s)	1548, 2341, 4105
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
BauI	CACGAG	1 cut(s)	2478
BbrPI	CACGTG	2 cut(s)	397, 4628
BbsI	GAAGAC	5 cut(s)	1714, 2740, 3197, 3235, 3893
Bbv12I	GWGCWC	4 cut(s)	1548, 2341, 4105, 4633
BceAI	ACGGC	8 cut(s)	265, 392, 3250, 3563, 3595, 3647, 3679, 4622
BcgI	CGANNNNNNTGC	4 cut(s)	2849, 2883, 3422, 3456
BciVI	GTATCC	5 cut(s)	1096, 1117, 2924, 3111, 4823
BclI	TGATCA	2 cut(s)	1903, 3097
BcoDI	GTCTC	4 cut(s)	1565, 3738, 3744, 3758
BfaI	CTAG	8 cut(s)	1173, 1217, 1557, 2015, 3188, 4308, 4581, 4722
BfmI	CTRYAG	7 cut(s)	1452, 2139, 2664, 3036, 3411, 3462, 4596
BfoI	RGCGCY	1 cut(s)	3449
BfrI	CTTAAG	2 cut(s)	668, 1291
BfuAI	ACCTGC	6 cut(s)	1818, 2671, 3461, 3469, 3501, 4261
BfuI	GTATCC	5 cut(s)	1096, 1117, 2924, 3111, 4823
BglII	AGATCT	1 cut(s)	3139
BmcAI	AGTACT	1 cut(s)	1613
Bme18I	GGWCC	9 cut(s)	293, 345, 741, 850, 1010, 2158, 2456, 2564, 3503
BmeRI	GACNNNNNGTC	1 cut(s)	3730
BmeT110I	CYCGRG	5 cut(s)	745, 3350, 3570, 3654, 3705
BmrI	ACTGGG	2 cut(s)	502, 4052
BmuI	ACTGGG	2 cut(s)	502, 4052
BoxI	GACNNNNGTC	1 cut(s)	527
BpiI	GAAGAC	5 cut(s)	1714, 2740, 3197, 3235, 3893
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	2 cut(s)	382, 4846
Bpu10I	CCTNAGC	1 cut(s)	4571
BpuEI	CTTGAG	5 cut(s)	526, 745, 4110, 4127, 4225
Bsa29I	ATCGAT	1 cut(s)	773
BsaAI	YACGTR	2 cut(s)	397, 4628
BsaBI	GATNNNNATC	1 cut(s)	1275
BsaHI	GRCGYC	3 cut(s)	696, 3387, 3435
BsaI	GGTCTC	1 cut(s)	3744
BsaJI	CCNNGG	9 cut(s)	1089, 1239, 1775, 2113, 2162, 3390, 3991, 3992, 4807
BsaWI	WCCGGW	1 cut(s)	4027
BsaXI	ACNNNNNCTCC	2 cut(s)	1535, 1565
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	5 cut(s)	508, 1415, 2818, 4047, 4872
Bse3DI	GCAATG	4 cut(s)	51, 435, 2037, 2662
Bse8I	GATNNNNATC	1 cut(s)	1275
BseCI	ATCGAT	1 cut(s)	773
BseDI	CCNNGG	9 cut(s)	1089, 1239, 1775, 2113, 2162, 3390, 3991, 3992, 4807
BseJI	GATNNNNATC	1 cut(s)	1275
BseMI	GCAATG	4 cut(s)	51, 435, 2037, 2662
BseMII	CTCAG	5 cut(s)	1836, 2416, 3795, 4442, 4475
BseNI	ACTGG	5 cut(s)	508, 1415, 2818, 4047, 4872
BseRI	GAGGAG	3 cut(s)	15, 1749, 3498
BseSI	GKGCMC	1 cut(s)	4633
BsgI	GTGCAG	2 cut(s)	2427, 4215
Bsh1236I	CGCG	1 cut(s)	3358
BshFI	GGCC	8 cut(s)	955, 1095, 1265, 1643, 3005, 3296, 3821, 4168
BshNI	GGYRCC	1 cut(s)	4521
BshVI	ATCGAT	1 cut(s)	773
BsiHKAI	GWGCWC	4 cut(s)	1548, 2341, 4105, 4633
BsiHKCI	CYCGRG	5 cut(s)	745, 3350, 3570, 3654, 3705
BsiSI	CCGG	5 cut(s)	348, 3379, 3550, 3634, 4028
BsiWI	CGTACG	1 cut(s)	3028
BslFI	GGGAC	4 cut(s)	236, 2144, 2577, 4475
BsmAI	GTCTC	4 cut(s)	1565, 3738, 3744, 3758
BsmFI	GGGAC	4 cut(s)	236, 2144, 2577, 4475
BsmI	GAATGC	4 cut(s)	2600, 4324, 4673, 4733
BsnI	GGCC	8 cut(s)	955, 1095, 1265, 1643, 3005, 3296, 3821, 4168
Bso31I	GGTCTC	1 cut(s)	3744
BsoBI	CYCGRG	5 cut(s)	745, 3350, 3570, 3654, 3705
Bsp1286I	GDGCHC	4 cut(s)	1548, 2341, 4105, 4633
Bsp1407I	TGTACA	1 cut(s)	1670
Bsp19I	CCATGG	3 cut(s)	2113, 2162, 4807
BspANI	GGCC	8 cut(s)	955, 1095, 1265, 1643, 3005, 3296, 3821, 4168
BspCNI	CTCAG	5 cut(s)	1837, 2415, 3796, 4441, 4476
BspDI	ATCGAT	1 cut(s)	773
BspFNI	CGCG	1 cut(s)	3358
BspHI	TCATGA	2 cut(s)	865, 1179
BspMAI	CTGCAG	4 cut(s)	2668, 3040, 3415, 3466
BspMI	ACCTGC	6 cut(s)	1818, 2671, 3461, 3469, 3501, 4261
BspQI	GCTCTTC	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	4521
BspTI	CTTAAG	2 cut(s)	668, 1291
BspTNI	GGTCTC	1 cut(s)	3744
BsrBI	CCGCTC	1 cut(s)	3366
BsrDI	GCAATG	4 cut(s)	51, 435, 2037, 2662
BsrFI	RCCGGY	1 cut(s)	347
BsrGI	TGTACA	1 cut(s)	1670
BsrI	ACTGG	5 cut(s)	508, 1415, 2818, 4047, 4872
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	9 cut(s)	1089, 1239, 1775, 2113, 2162, 3390, 3991, 3992, 4807
BssNAI	GTATAC	1 cut(s)	1359
BssNI	GRCGYC	3 cut(s)	696, 3387, 3435
BssSI	CACGAG	1 cut(s)	2478
BssT1I	CCWWGG	4 cut(s)	1089, 2113, 2162, 4807
Bst1107I	GTATAC	1 cut(s)	1359
Bst2BI	CACGAG	1 cut(s)	2478
Bst6I	CTCTTC	3 cut(s)	349, 542, 3168
BstACI	GRCGYC	3 cut(s)	696, 3387, 3435
BstAFI	CTTAAG	2 cut(s)	668, 1291
BstAPI	GCANNNNNTGC	3 cut(s)	50, 2414, 2423
BstAUI	TGTACA	1 cut(s)	1670
BstBAI	YACGTR	2 cut(s)	397, 4628
BstC8I	GCNNGC	9 cut(s)	78, 559, 1322, 1392, 2583, 2721, 2862, 3430, 4839
BstDEI	CTNAG	7 cut(s)	1845, 2402, 2701, 3804, 4428, 4484, 4571
BstDSI	CCRYGG	4 cut(s)	1775, 2113, 2162, 4807
BstFNI	CGCG	1 cut(s)	3358
BstH2I	RGCGCY	1 cut(s)	3449
BstHHI	GCGC	3 cut(s)	1851, 3358, 3448
BstMAI	GTCTC	4 cut(s)	1565, 3738, 3744, 3758
BstNSI	RCATGY	1 cut(s)	2552
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSFI	CTRYAG	7 cut(s)	1452, 2139, 2664, 3036, 3411, 3462, 4596
BstSLI	GKGCMC	1 cut(s)	4633
BstUI	CGCG	1 cut(s)	3358
BstV2I	GAAGAC	5 cut(s)	1714, 2740, 3197, 3235, 3893
BstX2I	RGATCY	6 cut(s)	37, 2135, 3139, 3956, 4399, 4471
BstXI	CCANNNNNNTGG	3 cut(s)	219, 569, 847
BstYI	RGATCY	6 cut(s)	37, 2135, 3139, 3956, 4399, 4471
BstZ17I	GTATAC	1 cut(s)	1359
Bsu15I	ATCGAT	1 cut(s)	773
BsuI	GTATCC	5 cut(s)	1096, 1117, 2924, 3111, 4823
BsuRI	GGCC	8 cut(s)	955, 1095, 1265, 1643, 3005, 3296, 3821, 4168
BsuTUI	ATCGAT	1 cut(s)	773
BtgI	CCRYGG	4 cut(s)	1775, 2113, 2162, 4807
BtgZI	GCGATG	2 cut(s)	1387, 1989
BtsI	GCAGTG	3 cut(s)	3056, 4631, 4738
BveI	ACCTGC	6 cut(s)	1818, 2671, 3461, 3469, 3501, 4261
Cac8I	GCNNGC	9 cut(s)	78, 559, 1322, 1392, 2583, 2721, 2862, 3430, 4839
CaiI	CAGNNNCTG	2 cut(s)	3493, 4298
CciI	TCATGA	2 cut(s)	865, 1179
CfoI	GCGC	3 cut(s)	1851, 3358, 3448
Cfr10I	RCCGGY	1 cut(s)	347
ClaI	ATCGAT	1 cut(s)	773
CseI	GACGC	3 cut(s)	3395, 3594, 3678
CsiI	ACCWGGT	2 cut(s)	3106, 3834
DdeI	CTNAG	7 cut(s)	1845, 2402, 2701, 3804, 4428, 4484, 4571
DraI	TTTAAA	3 cut(s)	450, 1111, 4155
DraIII	CACNNNGTG	2 cut(s)	3110, 4238
DriI	GACNNNNNGTC	1 cut(s)	3730
EaeI	YGGCCR	4 cut(s)	953, 1263, 3819, 4166
Eam1104I	CTCTTC	3 cut(s)	349, 542, 3168
Eam1105I	GACNNNNNGTC	1 cut(s)	3730
EarI	CTCTTC	3 cut(s)	349, 542, 3168
EciI	GGCGGA	8 cut(s)	95, 3384, 3416, 3528, 3550, 3612, 3634, 4319
Ecl136II	GAGCTC	3 cut(s)	1546, 2339, 4103
Eco130I	CCWWGG	4 cut(s)	1089, 2113, 2162, 4807
Eco24I	GRGCYC	3 cut(s)	1548, 2341, 4105
Eco31I	GGTCTC	1 cut(s)	3744
Eco32I	GATATC	2 cut(s)	1431, 1755
Eco47I	GGWCC	9 cut(s)	293, 345, 741, 850, 1010, 2158, 2456, 2564, 3503
Eco47III	AGCGCT	1 cut(s)	3447
Eco53kI	GAGCTC	3 cut(s)	1546, 2339, 4103
Eco57I	CTGAAG	4 cut(s)	2709, 3120, 3275, 3887
Eco72I	CACGTG	2 cut(s)	397, 4628
Eco88I	CYCGRG	5 cut(s)	745, 3350, 3570, 3654, 3705
EcoICRI	GAGCTC	3 cut(s)	1546, 2339, 4103
EcoO109I	RGGNCCY	3 cut(s)	2158, 2564, 3003
EcoRI	GAATTC	2 cut(s)	2083, 4187
EcoRV	GATATC	2 cut(s)	1431, 1755
EcoT14I	CCWWGG	4 cut(s)	1089, 2113, 2162, 4807
EcoT22I	ATGCAT	2 cut(s)	874, 1882
EcoT38I	GRGCYC	3 cut(s)	1548, 2341, 4105
ErhI	CCWWGG	4 cut(s)	1089, 2113, 2162, 4807
FalI	AAGNNNNNCTT	6 cut(s)	813, 845, 2018, 2050, 2766, 2798
FaqI	GGGAC	4 cut(s)	236, 2144, 2577, 4475
FauNDI	CATATG	4 cut(s)	946, 2146, 3019, 3232
FbaI	TGATCA	2 cut(s)	1903, 3097
FblI	GTMKAC	2 cut(s)	1358, 2790
FriOI	GRGCYC	3 cut(s)	1548, 2341, 4105
FspBI	CTAG	8 cut(s)	1173, 1217, 1557, 2015, 3188, 4308, 4581, 4722
GlaI	GCGC	3 cut(s)	1850, 3357, 3447
GsuI	CTGGAG	2 cut(s)	382, 4846
HaeII	RGCGCY	1 cut(s)	3449
HaeIII	GGCC	8 cut(s)	955, 1095, 1265, 1643, 3005, 3296, 3821, 4168
HapII	CCGG	5 cut(s)	348, 3379, 3550, 3634, 4028
HgaI	GACGC	3 cut(s)	3395, 3594, 3678
HhaI	GCGC	3 cut(s)	1851, 3358, 3448
Hin1I	GRCGYC	3 cut(s)	696, 3387, 3435
Hin6I	GCGC	3 cut(s)	1849, 3356, 3446
HinP1I	GCGC	3 cut(s)	1849, 3356, 3446
HincII	GTYRAC	4 cut(s)	1213, 1288, 2317, 3699
HindII	GTYRAC	4 cut(s)	1213, 1288, 2317, 3699
HindIII	AAGCTT	2 cut(s)	2862, 4048
HpaII	CCGG	5 cut(s)	348, 3379, 3550, 3634, 4028
HphI	GGTGA	5 cut(s)	316, 1878, 2297, 3850, 4559
Hpy99I	CGWCG	8 cut(s)	413, 3363, 3437, 3440, 3584, 3610, 3668, 3694
HpyCH4IV	ACGT	8 cut(s)	396, 696, 960, 2499, 2807, 3435, 3898, 4627
HpyF3I	CTNAG	7 cut(s)	1845, 2402, 2701, 3804, 4428, 4484, 4571
HpySE526I	ACGT	8 cut(s)	396, 696, 960, 2499, 2807, 3435, 3898, 4627
Hsp92I	GRCGYC	3 cut(s)	696, 3387, 3435
HspAI	GCGC	3 cut(s)	1849, 3356, 3446
Ksp22I	TGATCA	2 cut(s)	1903, 3097
LguI	GCTCTTC	1 cut(s)	349
LmnI	GCTCC	8 cut(s)	413, 1317, 1543, 2378, 3363, 4030, 4295, 4393
MabI	ACCWGGT	2 cut(s)	3106, 3834
MaeI	CTAG	8 cut(s)	1173, 1217, 1557, 2015, 3188, 4308, 4581, 4722
MaeII	ACGT	8 cut(s)	396, 696, 960, 2499, 2807, 3435, 3898, 4627
MaeIII	GTNAC	8 cut(s)	111, 304, 799, 1295, 2008, 2186, 2285, 4198
MbiI	CCGCTC	1 cut(s)	3366
MfeI	CAATTG	5 cut(s)	71, 2526, 3150, 4162, 4752
MflI	RGATCY	6 cut(s)	37, 2135, 3139, 3956, 4399, 4471
MhlI	GDGCHC	4 cut(s)	1548, 2341, 4105, 4633
MlsI	TGGCCA	4 cut(s)	955, 1265, 3821, 4168
MluNI	TGGCCA	4 cut(s)	955, 1265, 3821, 4168
MlyI	GAGTC	8 cut(s)	28, 301, 760, 799, 2322, 2929, 3432, 4426
MmeI	TCCRAC	4 cut(s)	391, 866, 2260, 4264
Mox20I	TGGCCA	4 cut(s)	955, 1265, 3821, 4168
Mph1103I	ATGCAT	2 cut(s)	874, 1882
MroXI	GAANNNNTTC	1 cut(s)	3342
MscI	TGGCCA	4 cut(s)	955, 1265, 3821, 4168
MslI	CAYNNNNRTG	7 cut(s)	217, 782, 845, 949, 1691, 1774, 4342
Msp20I	TGGCCA	4 cut(s)	955, 1265, 3821, 4168
MspA1I	CMGCKG	4 cut(s)	1874, 3599, 3683, 4229
MspCI	CTTAAG	2 cut(s)	668, 1291
MspI	CCGG	5 cut(s)	348, 3379, 3550, 3634, 4028
MunI	CAATTG	5 cut(s)	71, 2526, 3150, 4162, 4752
Mva1269I	GAATGC	4 cut(s)	2600, 4324, 4673, 4733
MvnI	CGCG	1 cut(s)	3358
NcoI	CCATGG	3 cut(s)	2113, 2162, 4807
NdeI	CATATG	4 cut(s)	946, 2146, 3019, 3232
NmeAIII	GCCGAG	1 cut(s)	948
NmuCI	GTSAC	4 cut(s)	304, 799, 2186, 2285
NsiI	ATGCAT	2 cut(s)	874, 1882
NspI	RCATGY	1 cut(s)	2552
OliI	CACNNNNGTG	1 cut(s)	782
PaeR7I	CTCGAG	2 cut(s)	745, 3705
PagI	TCATGA	2 cut(s)	865, 1179
PasI	CCCWGGG	1 cut(s)	3992
PciI	ACATGT	1 cut(s)	2548
PciSI	GCTCTTC	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	2 cut(s)	3432, 3712
PctI	GAATGC	4 cut(s)	2600, 4324, 4673, 4733
PdmI	GAANNNNTTC	1 cut(s)	3342
Pfl23II	CGTACG	1 cut(s)	3028
PflMI	CCANNNNNTGG	1 cut(s)	3303
PleI	GAGTC	8 cut(s)	27, 301, 760, 798, 2321, 2928, 3431, 4426
PmaCI	CACGTG	2 cut(s)	397, 4628
PmlI	CACGTG	2 cut(s)	397, 4628
PpsI	GAGTC	8 cut(s)	27, 301, 760, 798, 2321, 2928, 3431, 4426
Ppu21I	YACGTR	2 cut(s)	397, 4628
PpuMI	RGGWCCY	2 cut(s)	2158, 2564
PscI	ACATGT	1 cut(s)	2548
PshAI	GACNNNNGTC	1 cut(s)	527
PshBI	ATTAAT	2 cut(s)	1409, 1785
PsiI	TTATAA	2 cut(s)	2367, 3317
Psp124BI	GAGCTC	3 cut(s)	1548, 2341, 4105
Psp1406I	AACGTT	1 cut(s)	2499
Psp5II	RGGWCCY	2 cut(s)	2158, 2564
PspCI	CACGTG	2 cut(s)	397, 4628
PspLI	CGTACG	1 cut(s)	3028
PspPPI	RGGWCCY	2 cut(s)	2158, 2564
PspXI	VCTCGAGB	1 cut(s)	745
PstI	CTGCAG	4 cut(s)	2668, 3040, 3415, 3466
PstNI	CAGNNNCTG	2 cut(s)	3493, 4298
PsuI	RGATCY	6 cut(s)	37, 2135, 3139, 3956, 4399, 4471
PvuII	CAGCTG	2 cut(s)	1874, 4229
RseI	CAYNNNNRTG	7 cut(s)	217, 782, 845, 949, 1691, 1774, 4342
SacI	GAGCTC	3 cut(s)	1548, 2341, 4105
SapI	GCTCTTC	1 cut(s)	349
ScaI	AGTACT	1 cut(s)	1613
SchI	GAGTC	8 cut(s)	28, 301, 760, 799, 2322, 2929, 3432, 4426
SduI	GDGCHC	4 cut(s)	1548, 2341, 4105, 4633
SexAI	ACCWGGT	2 cut(s)	3106, 3834
SfcI	CTRYAG	7 cut(s)	1452, 2139, 2664, 3036, 3411, 3462, 4596
Sfr274I	CTCGAG	2 cut(s)	745, 3705
SinI	GGWCC	9 cut(s)	293, 345, 741, 850, 1010, 2158, 2456, 2564, 3503
SlaI	CTCGAG	2 cut(s)	745, 3705
SmiMI	CAYNNNNRTG	7 cut(s)	217, 782, 845, 949, 1691, 1774, 4342
SmlI	CTYRAG	9 cut(s)	541, 668, 745, 760, 1291, 3705, 4106, 4125, 4204
SmoI	CTYRAG	9 cut(s)	541, 668, 745, 760, 1291, 3705, 4106, 4125, 4204
SspI	AATATT	1 cut(s)	2838
SspMI	CTAG	8 cut(s)	1173, 1217, 1557, 2015, 3188, 4308, 4581, 4722
SstI	GAGCTC	3 cut(s)	1548, 2341, 4105
StyI	CCWWGG	4 cut(s)	1089, 2113, 2162, 4807
TaiI	ACGT	8 cut(s)	399, 699, 963, 2502, 2810, 3438, 3901, 4630
TaqI	TCGA	8 cut(s)	340, 432, 746, 773, 2341, 3518, 3706, 4803
TaqII	GACCGA	1 cut(s)	3726
TatI	WGTACW	3 cut(s)	1611, 1670, 2972
TauI	GCSGC	8 cut(s)	3027, 3369, 3578, 3587, 3599, 3662, 3671, 3683
TseFI	GTSAC	4 cut(s)	304, 799, 2186, 2285
Tsp45I	GTSAC	4 cut(s)	304, 799, 2186, 2285
Van91I	CCANNNNNTGG	1 cut(s)	3303
Vha464I	CTTAAG	2 cut(s)	668, 1291
VneI	GTGCAC	1 cut(s)	4629
VpaK11BI	GGWCC	9 cut(s)	293, 345, 741, 850, 1010, 2158, 2456, 2564, 3503
VspI	ATTAAT	2 cut(s)	1409, 1785
XceI	RCATGY	1 cut(s)	2552
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1422, 2160, 4780
XhoI	CTCGAG	2 cut(s)	745, 3705
XmiI	GTMKAC	2 cut(s)	1358, 2790
XmnI	GAANNNNTTC	1 cut(s)	3342
XspI	CTAG	8 cut(s)	1173, 1217, 1557, 2015, 3188, 4308, 4581, 4722
ZraI	GACGTC	2 cut(s)	697, 3436
ZrmI	AGTACT	1 cut(s)	1613
Zsp2I	ATGCAT	2 cut(s)	874, 1882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.