Rmu_sc0001368.1_g000008

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001368.1
OG0019060
Physical Location & Seq
Forward (+)
33324 .. 33635
312 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
atgtcatccgggttgggttctctgatgtggttccgcaagggcctgaggatccacgacaaccctgctctcgagcacgcctccaaggcctccaatttcctctacccggtcttcgtcatcgacccgcactacatgaagcccgacccgaccgcaccctcccgcgggtcgtccaaggctggcctgaaccggatccggttcctgctccagagtctggtcgatttggatttgagcctcaaaaagctcgggtccagattgttggtgcttaaaggcgaccccagcgaggtcatcgttcgctgccttaaggaggttaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003913 GO:0003914 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0016829 GO:0016830 GO:0050896 GO:0140097
KEGG Pathways
Metabolic & Signaling
ko04710 map04710
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

103

Amino Acids

11.46

Weight (kDa)

9.84

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 7 - 102 3.2e-27 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 208
AccII CGCG 1 cut(s) 159
AciI CCGC 5 cut(s) 34, 122, 147, 157, 159
AclWI GGATC 4 cut(s) 43, 56, 181, 194
AfiI CCNNNNNNNGG 6 cut(s) 103, 158, 159, 208, 277, 301
AflII CTTAAG 1 cut(s) 296
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw21I GWGCWC 1 cut(s) 75
AlwI GGATC 4 cut(s) 43, 56, 181, 194
AlwNI CAGNNNCTG 1 cut(s) 208
Ama87I CYCGRG 2 cut(s) 68, 239
AoxI GGCC 3 cut(s) 40, 84, 175
ApeKI GCWGC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 40, 243
AsuC2I CCSGG 2 cut(s) 10, 104
AvaI CYCGRG 2 cut(s) 68, 239
AvaII GGWCC 1 cut(s) 243
AxyI CCTNAGG 1 cut(s) 44
BamHI GGATCC 2 cut(s) 48, 186
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 278
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BcnI CCSGG 2 cut(s) 10, 104
BfrI CTTAAG 1 cut(s) 296
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme1390I CCNGG 2 cut(s) 10, 104
Bme18I GGWCC 1 cut(s) 243
BmeT110I CYCGRG 2 cut(s) 68, 239
BmgT120I GGNCC 2 cut(s) 40, 243
BmiI GGNNCC 5 cut(s) 32, 50, 188, 194, 244
BmrFI CCNGG 2 cut(s) 10, 104
BpiI GAAGAC 1 cut(s) 100
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 1 cut(s) 185
BpuMI CCSGG 2 cut(s) 10, 104
BsaJI CCNNGG 3 cut(s) 81, 157, 168
BsaWI WCCGGW 2 cut(s) 183, 189
Bsc4I CCNNNNNNNGG 6 cut(s) 103, 158, 159, 208, 277, 301
Bse21I CCTNAGG 1 cut(s) 44
BseDI CCNNGG 3 cut(s) 81, 157, 168
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 6 cut(s) 103, 158, 159, 208, 277, 301
BseMII CTCAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 42, 86, 177
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 2 cut(s) 68, 239
BsiSI CCGG 4 cut(s) 9, 104, 184, 190
BslI CCNNNNNNNGG 6 cut(s) 103, 158, 159, 208, 277, 301
BsnI GGCC 3 cut(s) 42, 86, 177
BsoBI CYCGRG 2 cut(s) 68, 239
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 48, 186
BspACI CCGC 5 cut(s) 34, 122, 147, 157, 159
BspANI GGCC 3 cut(s) 42, 86, 177
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 5 cut(s) 32, 50, 188, 194, 244
BspPI GGATC 4 cut(s) 43, 56, 181, 194
BspTI CTTAAG 1 cut(s) 296
BssECI CCNNGG 3 cut(s) 81, 157, 168
BssMI GATC 2 cut(s) 48, 186
BssT1I CCWWGG 2 cut(s) 81, 168
BstAFI CTTAAG 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 75, 175
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 157
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 5
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 2 cut(s) 51, 189
BstMBI GATC 2 cut(s) 48, 186
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 83, 273
BstSCI CCNGG 2 cut(s) 8, 102
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 2 cut(s) 48, 186
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 2 cut(s) 48, 186
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 3 cut(s) 42, 86, 177
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 5
Cac8I GCNNGC 2 cut(s) 75, 175
CaiI CAGNNNCTG 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 40, 243
Cfr42I CCGCGG 1 cut(s) 160
CviAII CATG 1 cut(s) 130
CviJI RGCY 7 cut(s) 42, 86, 136, 173, 177, 228, 238
CviKI_1 RGCY 7 cut(s) 42, 86, 136, 173, 177, 228, 238
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 50, 188
DpnII GATC 2 cut(s) 48, 186
Eco130I CCWWGG 2 cut(s) 81, 168
Eco147I AGGCCT 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 243
Eco81I CCTNAGG 1 cut(s) 44
Eco88I CYCGRG 2 cut(s) 68, 239
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 81, 168
ErhI CCWWGG 2 cut(s) 81, 168
FaeI CATG 1 cut(s) 133
FaiI YATR 1 cut(s) 131
FatI CATG 1 cut(s) 129
FauI CCCGC 3 cut(s) 129, 152, 164
Fnu4HI GCNGC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 292
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 3 cut(s) 42, 86, 177
HapII CCGG 4 cut(s) 9, 104, 184, 190
Hin1II CATG 1 cut(s) 133
HinfI GANTC 1 cut(s) 205
HpaII CCGG 4 cut(s) 9, 104, 184, 190
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 3 cut(s) 68, 202, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 273
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 1 cut(s) 133
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 2 cut(s) 48, 186
LmnI GCTCC 1 cut(s) 204
Lsp1109I GCAGC 1 cut(s) 278
MalI GATC 2 cut(s) 50, 188
MboI GATC 2 cut(s) 48, 186
MboII GAAGA 1 cut(s) 100
MflI RGATCY 2 cut(s) 48, 186
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 2 cut(s) 91, 307
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 8 cut(s) 39, 88, 97, 107, 163, 239, 271, 295
MseI TTAA 4 cut(s) 261, 297, 306, 310
MspA1I CMGCKG 1 cut(s) 159
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 4 cut(s) 9, 104, 184, 190
MspR9I CCNGG 2 cut(s) 10, 104
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 83, 273
NciI CCSGG 2 cut(s) 10, 104
NdeII GATC 2 cut(s) 48, 186
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 5 cut(s) 32, 50, 188, 194, 244
PacI TTAATTAA 1 cut(s) 310
PaeR7I CTCGAG 1 cut(s) 68
PceI AGGCCT 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 1 cut(s) 293
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 272
PspN4I GGNNCC 5 cut(s) 32, 50, 188, 194, 244
PspPI GGNCC 2 cut(s) 40, 243
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 2 cut(s) 48, 186
SacII CCGCGG 1 cut(s) 160
SaqAI TTAA 4 cut(s) 261, 297, 306, 310
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 2 cut(s) 48, 186
Sau96I GGNCC 2 cut(s) 40, 243
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 10, 104
SduI GDGCHC 1 cut(s) 75
SetI ASST 3 cut(s) 240, 282, 306
Sfr274I CTCGAG 1 cut(s) 68
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SinI GGWCC 1 cut(s) 243
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 68, 296
SmoI CTYRAG 2 cut(s) 68, 296
Sse9I AATT 2 cut(s) 91, 307
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 5 cut(s) 34, 122, 147, 157, 159
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 8, 102
StyI CCWWGG 2 cut(s) 81, 168
TaqI TCGA 3 cut(s) 69, 117, 213
TasI AATT 2 cut(s) 91, 307
Tru1I TTAA 4 cut(s) 261, 297, 306, 310
Tru9I TTAA 4 cut(s) 261, 297, 306, 310
TseI GCWGC 1 cut(s) 291
TspDTI ATGAA 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 243
XagI CCTNNNNNAGG 1 cut(s) 299
XhoI CTCGAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.