Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001576.1

Orthogroup ID

OG0010043

Physical Location & Seq

Genomic Coordinates Forward (+)

73270 .. 74532

Gene Structure 1263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggaagtattgacatatatgtccataattgtgatatttggtgcatgggatggttggacagggctgtcggaggagccggtgcaacaagagaaggagatggtggggagcggcggtggagccgcgtgggaagtggttacggcggcggagaagcggaagaagcttcggaggattaggagaggagtaggagggcataggagtagtaacgagggggttgatgatgatgaggaggaggaagagaatgagaacggcattaatggtggaggaggggagcacccgaatagggcattagcaatgaggggtggtgggagagagagacagagggagcacccgttcatcgtaactgaggctggggaggtggcacgtggcaaaaagaacggactggattacctctttcatctgtatgagcagtgccatgagtttttgacccaggtccagaacattgccaagcagcgcggtgaaaaatgtcccaccaaggtgacaaaccaggtgtttaggtatgcgaaaaaggagggagcaaactacatcaataagcccaaaatgcgacactatgttcactgctatgcgctgcattgcctggacgaggagggttcgaatgcgctgaggagagagtgcaaactgcgaggcgagaacattggggcgtggaggcaggcgtgttacaggcctgttgtggaaatagctgcaggccaaggctgggacattgatgccattttcagtgcacatcctcagctatctgtttggtatgttcctaccaaacttcggcagctttgtcacgctgagcgcaacaatgccaccgcctctagctccgcctcaggtggtagtggtactgctgatcacctgccttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010022 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010476 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0031490 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C_LFY_FLO LFY_SAM

Protein Analysis

281

Amino Acids

31.38

Weight (kDa)

6.84

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C_LFY_FLO	PF17538	100 - 264	8.6e-101	DNA Binding Domain (C-terminal) Leafy/Floricaula

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61850 AT5G61850
fragaria_vesca	FvH4_3g03530 FvH4_3g04170 FvH4_3g04170 FvH4_5g09660
malus_domestica	MD06G1129500.v1.1 MD14G1146700.v1.1
prunus_persica	Prupe.5G140700_v2.0.a1
pyrus_communis	pycom06g12130 pycom14g12130
rosa_chinensis	RchiOBHm_Chr7g0188591
rosa_laevigata	RLG00000004681
rosa_multiflora	Rmu_sc0001576.1_g000018
rosa_roxburghii	Rroxscaffold_3G00266230
rosa_rugosa	Rorug06G0491500
rosa_samantha	Rh7AG096400 Rh7BG098300 Rh7CG099200 Rh7DG098400
rosa_wichuraiana	Rw7G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	19, 64
AccBSI	CCGCTC	1 cut(s)	108
AccII	CGCG	2 cut(s)	122, 453
AciI	CCGC	9 cut(s)	108, 111, 120, 140, 143, 151, 453, 792, 804
AcvI	CACGTG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	823
AfiI	CCNNNNNNNGG	4 cut(s)	280, 580, 691, 756
AjnI	CCWGG	3 cut(s)	426, 483, 573
AleI	CACNNNNGTG	1 cut(s)	473
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
AluBI	AGCT	5 cut(s)	160, 677, 727, 763, 801
AluI	AGCT	5 cut(s)	160, 677, 727, 763, 801
Alw21I	GWGCWC	3 cut(s)	273, 327, 718
Alw26I	GTCTC	1 cut(s)	307
Alw44I	GTGCAC	1 cut(s)	714
AoxI	GGCC	2 cut(s)	659, 682
ApaLI	GTGCAC	1 cut(s)	714
ApeKI	GCWGC	4 cut(s)	448, 565, 677, 760
AseI	ATTAAT	1 cut(s)	252
AspLEI	GCGC	4 cut(s)	453, 565, 598, 780
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	467, 487, 824
AsuII	TTCGAA	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	430
AxyI	CCTNAGG	1 cut(s)	808
BaeGI	GKGCMC	1 cut(s)	718
BbrPI	CACGTG	1 cut(s)	362
Bbv12I	GWGCWC	3 cut(s)	273, 327, 718
BbvCI	CCTCAGC	2 cut(s)	599, 723
BbvI	GCAGC	4 cut(s)	460, 552, 664, 772
BccI	CCATC	2 cut(s)	44, 91
BceAI	ACGGC	2 cut(s)	153, 262
BciT130I	CCWGG	3 cut(s)	428, 485, 575
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	798
BfmI	CTRYAG	1 cut(s)	678
BisI	GCNGC	7 cut(s)	109, 120, 141, 449, 566, 678, 761
BlpI	GCTNAGC	1 cut(s)	774
BlsI	GCNGC	7 cut(s)	110, 121, 142, 450, 567, 679, 762
Bme1390I	CCNGG	3 cut(s)	428, 485, 575
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	2 cut(s)	75, 118
BmrFI	CCNGG	3 cut(s)	428, 485, 575
BmsI	GCATC	1 cut(s)	691
BoxI	GACNNNNGTC	1 cut(s)	428
Bpu10I	CCTNAGC	2 cut(s)	599, 723
Bpu1102I	GCTNAGC	1 cut(s)	774
Bpu14I	TTCGAA	1 cut(s)	590
BsaAI	YACGTR	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	426, 471, 685
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 314, 344
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 580, 691, 756
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	384
Bse21I	CCTNAGG	1 cut(s)	808
Bse3DI	GCAATG	3 cut(s)	297, 438, 568
BseBI	CCWGG	3 cut(s)	428, 485, 575
BseDI	CCNNGG	3 cut(s)	426, 471, 685
BseGI	GGATG	2 cut(s)	55, 718
BseLI	CCNNNNNNNGG	4 cut(s)	280, 580, 691, 756
BseMI	GCAATG	3 cut(s)	297, 438, 568
BseMII	CTCAG	5 cut(s)	333, 590, 737, 765, 822
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	7 cut(s)	86, 192, 239, 242, 276, 596, 616
BseSI	GKGCMC	1 cut(s)	718
BseXI	GCAGC	4 cut(s)	460, 552, 664, 772
BseYI	CCCAGC	2 cut(s)	347, 690
Bsh1236I	CGCG	2 cut(s)	122, 453
BshFI	GGCC	2 cut(s)	661, 684
BsiHKAI	GWGCWC	3 cut(s)	273, 327, 718
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	2 cut(s)	450, 707
BslI	CCNNNNNNNGG	4 cut(s)	280, 580, 691, 756
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	2 cut(s)	450, 707
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	2 cut(s)	661, 684
Bsp119I	TTCGAA	1 cut(s)	590
Bsp1286I	GDGCHC	3 cut(s)	273, 327, 718
Bsp143I	GATC	1 cut(s)	829
Bsp1720I	GCTNAGC	1 cut(s)	774
BspACI	CCGC	9 cut(s)	108, 111, 120, 140, 143, 151, 453, 792, 804
BspANI	GGCC	2 cut(s)	661, 684
BspCNI	CTCAG	5 cut(s)	334, 591, 736, 766, 821
BspFNI	CGCG	2 cut(s)	122, 453
BspLI	GGNNCC	2 cut(s)	75, 118
BspMAI	CTGCAG	1 cut(s)	682
BspT104I	TTCGAA	1 cut(s)	590
BsrBI	CCGCTC	1 cut(s)	108
BsrDI	GCAATG	3 cut(s)	297, 438, 568
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	426, 471, 685
BssMI	GATC	1 cut(s)	829
BssT1I	CCWWGG	2 cut(s)	471, 685
Bst2UI	CCWGG	3 cut(s)	428, 485, 575
Bst6I	CTCTTC	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	648, 682
BstDEI	CTNAG	5 cut(s)	342, 599, 723, 774, 808
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	55, 718
BstFNI	CGCG	2 cut(s)	122, 453
BstHHI	GCGC	4 cut(s)	453, 565, 598, 780
BstKTI	GATC	1 cut(s)	832
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	829
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 538
BstNI	CCWGG	3 cut(s)	428, 485, 575
BstPAI	GACNNNNGTC	1 cut(s)	428
BstSCI	CCNGG	3 cut(s)	426, 483, 573
BstSFI	CTRYAG	1 cut(s)	678
BstSLI	GKGCMC	1 cut(s)	718
BstUI	CGCG	2 cut(s)	122, 453
BstV1I	GCAGC	4 cut(s)	460, 552, 664, 772
Bsu36I	CCTNAGG	1 cut(s)	808
BsuRI	GGCC	2 cut(s)	661, 684
BtsCI	GGATG	2 cut(s)	55, 718
BtsI	GCAGTG	2 cut(s)	413, 553
BtsIMutI	CAGTG	3 cut(s)	413, 553, 718
Cac8I	GCNNGC	2 cut(s)	648, 682
CfoI	GCGC	4 cut(s)	453, 565, 598, 780
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	430
CsiI	ACCWGGT	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	822
CviAII	CATG	2 cut(s)	45, 413
CviQI	GTAC	1 cut(s)	822
DdeI	CTNAG	5 cut(s)	342, 599, 723, 774, 808
DpnI	GATC	1 cut(s)	831
DpnII	GATC	1 cut(s)	829
DrdI	GACNNNNNNGTC	2 cut(s)	19, 64
DseDI	GACNNNNNNGTC	2 cut(s)	19, 64
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	2 cut(s)	158, 793
Eco130I	CCWWGG	2 cut(s)	471, 685
Eco147I	AGGCCT	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	430
Eco72I	CACGTG	1 cut(s)	362
Eco81I	CCTNAGG	1 cut(s)	808
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoRII	CCWGG	3 cut(s)	426, 483, 573
EcoT14I	CCWWGG	2 cut(s)	471, 685
ErhI	CCWWGG	2 cut(s)	471, 685
FaeI	CATG	2 cut(s)	48, 416
FaqI	GGGAC	2 cut(s)	450, 707
FatI	CATG	2 cut(s)	44, 412
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	7 cut(s)	109, 120, 141, 449, 566, 678, 761
FokI	GGATG	2 cut(s)	62, 705
Fsp4HI	GCNGC	7 cut(s)	109, 120, 141, 449, 566, 678, 761
FspBI	CTAG	1 cut(s)	798
GlaI	GCGC	4 cut(s)	452, 564, 597, 779
GluI	GCNGC	7 cut(s)	109, 120, 141, 449, 566, 678, 761
GsaI	CCCAGC	2 cut(s)	351, 694
HaeIII	GGCC	2 cut(s)	661, 684
HapII	CCGG	1 cut(s)	77
HhaI	GCGC	4 cut(s)	453, 565, 598, 780
Hin1II	CATG	2 cut(s)	48, 416
Hin6I	GCGC	4 cut(s)	451, 563, 596, 778
HinP1I	GCGC	4 cut(s)	451, 563, 596, 778
HindIII	AAGCTT	1 cut(s)	158
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	3 cut(s)	467, 487, 824
Hpy166II	GTNNAC	2 cut(s)	553, 716
Hpy188I	TCNGA	2 cut(s)	70, 165
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	2 cut(s)	553, 716
HpyAV	CCTTC	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	6 cut(s)	44, 82, 568, 612, 680, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 538
HpyF3I	CTNAG	5 cut(s)	342, 599, 723, 774, 808
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	48, 416
HspAI	GCGC	4 cut(s)	451, 563, 596, 778
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	1 cut(s)	829
LmnI	GCTCC	7 cut(s)	73, 105, 116, 268, 322, 512, 806
Lsp1109I	GCAGC	4 cut(s)	460, 552, 664, 772
LweI	GCATC	1 cut(s)	691
MabI	ACCWGGT	1 cut(s)	483
MaeI	CTAG	1 cut(s)	798
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	6 cut(s)	133, 200, 337, 475, 653, 767
MalI	GATC	1 cut(s)	831
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	1 cut(s)	829
MboII	GAAGA	2 cut(s)	166, 245
MhlI	GDGCHC	3 cut(s)	273, 327, 718
MluCI	AATT	1 cut(s)	27
MmeI	TCCRAC	2 cut(s)	35, 48
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	4 cut(s)	29, 399, 473, 558
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	3 cut(s)	428, 485, 575
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	3 cut(s)	428, 485, 575
MvnI	CGCG	2 cut(s)	122, 453
MwoI	GCNNNNNNNGC	2 cut(s)	157, 538
NdeII	GATC	1 cut(s)	829
NlaIII	CATG	2 cut(s)	48, 416
NlaIV	GGNNCC	2 cut(s)	75, 118
NmuCI	GTSAC	2 cut(s)	475, 767
NspV	TTCGAA	1 cut(s)	590
OliI	CACNNNNGTG	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	661
PctI	GAATGC	1 cut(s)	598
PkrI	GCNGC	7 cut(s)	110, 121, 142, 450, 567, 679, 762
PmaCI	CACGTG	1 cut(s)	362
PmlI	CACGTG	1 cut(s)	362
Ppu21I	YACGTR	1 cut(s)	362
PshAI	GACNNNNGTC	1 cut(s)	428
PshBI	ATTAAT	1 cut(s)	252
Psp6I	CCWGG	3 cut(s)	426, 483, 573
PspCI	CACGTG	1 cut(s)	362
PspFI	CCCAGC	2 cut(s)	347, 690
PspGI	CCWGG	3 cut(s)	426, 483, 573
PspN4I	GGNNCC	2 cut(s)	75, 118
PspPI	GGNCC	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	682
RsaI	GTAC	1 cut(s)	823
RsaNI	GTAC	1 cut(s)	822
RseI	CAYNNNNRTG	4 cut(s)	29, 399, 473, 558
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	7 cut(s)	109, 120, 141, 449, 566, 678, 761
Sau3AI	GATC	1 cut(s)	829
Sau96I	GGNCC	1 cut(s)	430
ScrFI	CCNGG	3 cut(s)	428, 485, 575
SduI	GDGCHC	3 cut(s)	273, 327, 718
SexAI	ACCWGGT	1 cut(s)	483
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	678
SfuI	TTCGAA	1 cut(s)	590
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	4 cut(s)	29, 399, 473, 558
Sse9I	AATT	1 cut(s)	27
SseBI	AGGCCT	1 cut(s)	661
SsiI	CCGC	9 cut(s)	108, 111, 120, 140, 143, 151, 453, 792, 804
SspMI	CTAG	1 cut(s)	798
StuI	AGGCCT	1 cut(s)	661
StyD4I	CCNGG	3 cut(s)	426, 483, 573
StyI	CCWWGG	2 cut(s)	471, 685
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	1 cut(s)	590
TasI	AATT	1 cut(s)	27
TauI	GCSGC	3 cut(s)	111, 122, 143
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	3 cut(s)	413, 560, 718
TseFI	GTSAC	2 cut(s)	475, 767
TseI	GCWGC	4 cut(s)	448, 565, 677, 760
Tsp45I	GTSAC	2 cut(s)	475, 767
TspDTI	ATGAA	2 cut(s)	322, 383
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	3 cut(s)	413, 560, 718
VneI	GTGCAC	1 cut(s)	714
VpaK11BI	GGWCC	1 cut(s)	430
VspI	ATTAAT	1 cut(s)	252
XagI	CCTNNNNNAGG	1 cut(s)	578
XspI	CTAG	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.