Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001603.1

Orthogroup ID

OG0017757

Physical Location & Seq

Genomic Coordinates Reverse (-)

537 .. 2308

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggcttccaacaacctccagcaccgagtcaccaatgccgaccaaccacccttgaacattccccccattcccaccaaaccaataagcaccaccatcaccaaacaagccaacaaggccaaggcacatagagccctaaggtccctagccataggcattgtggtccctttcttcttgtccgtgaccgtcattctcatctttggctcgggcatcaagtatcgagccatgtccaaacccttttggttcccaccggtttggatcatacacatatcgtcattgggttcctccatcctcatgggactcgctgcctggcttgtttgggcggatggtgggtttcattcgcaatccacttccaattcgttgttcttctacattgctcagatttcgttaagcgtcatttggggtcccgttgttcttgtgtttggggcggcttggatgggattgcttctttgtttggtgcatttcggaactctaatcgcttgttatatgagctttcgagatgtgaatccgtttgccaaagatctggtaaaaccatgcttggcttgggcgggatatctcaccattgttaatagtacgctttcatgcacgccatgtgctcgattaaatgccgacgctgctcgcgtcaagtggcacccagcgacacatgcctcggtttttcttcttcgctgggagttggatgctattgtgatgattgcgtggtttgtgaatcctcttctcattatctcatctcactgtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

245

Amino Acids

26.93

Weight (kDa)

9.66

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	68 - 191	4.8e-26	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017757)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G136800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422241
rosa_laevigata	RLG00000007626
rosa_multiflora	Rmu_sc0001603.1_g000001 Rmu_sc0003930.1_g000020
rosa_roxburghii	Rroxscaffold_5G00364350
rosa_rugosa	Rorug04G0178900
rosa_samantha	Rh4AG237900 Rh4BG241100 Rh4CG253000 Rh4DG236700
rosa_wichuraiana	Rw4G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	627
AccII	CGCG	1 cut(s)	618
AciI	CCGC	3 cut(s)	320, 425, 545
AclWI	GGATC	1 cut(s)	263
AfaI	GTAC	1 cut(s)	571
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	305
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	1 cut(s)	489
AluI	AGCT	1 cut(s)	489
Alw21I	GWGCWC	1 cut(s)	595
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	302, 611
AsiGI	ACCGGT	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	138, 160, 401
AsuHPI	GGTGA	3 cut(s)	22, 88, 547
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	3 cut(s)	138, 160, 401
AxyI	CCTNAGG	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	627
BanII	GRGCYC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	595
BbvI	GCAGC	2 cut(s)	289, 598
BccI	CCATC	4 cut(s)	101, 293, 317, 427
BciT130I	CCWGG	1 cut(s)	307
BfaI	CTAG	1 cut(s)	143
BglI	GCCNNNNNGGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	3 cut(s)	303, 426, 612
BlsI	GCNGC	3 cut(s)	304, 427, 613
Bme1390I	CCNGG	1 cut(s)	307
Bme18I	GGWCC	3 cut(s)	138, 160, 401
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	138, 160, 401
BmiI	GGNNCC	7 cut(s)	140, 162, 242, 280, 402, 403, 629
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	2 cut(s)	216, 664
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	117, 645
BsaWI	WCCGGW	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	247
Bse21I	CCTNAGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	117, 645
BseGI	GGATG	4 cut(s)	285, 328, 438, 679
BseJI	GATNNNNATC	1 cut(s)	501
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	289, 598
BseYI	CCCAGC	2 cut(s)	631, 663
Bsh1236I	CGCG	1 cut(s)	618
BshFI	GGCC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	627
BshTI	ACCGGT	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	595
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	4 cut(s)	124, 146, 309, 387
BsmFI	GGGAC	4 cut(s)	124, 146, 309, 387
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	133, 595
Bsp143I	GATC	2 cut(s)	255, 517
BspACI	CCGC	3 cut(s)	320, 425, 545
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	618
BspLI	GGNNCC	7 cut(s)	140, 162, 242, 280, 402, 403, 629
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	627
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	117, 645
BssMI	GATC	2 cut(s)	255, 517
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	2 cut(s)	184, 731
Bst6I	CTCTTC	1 cut(s)	714
BstC8I	GCNNGC	2 cut(s)	584, 616
BstDEI	CTNAG	2 cut(s)	134, 375
BstF5I	GGATG	4 cut(s)	285, 328, 438, 679
BstFNI	CGCG	1 cut(s)	618
BstKTI	GATC	2 cut(s)	258, 520
BstMBI	GATC	2 cut(s)	255, 517
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 128, 611, 641
BstNI	CCWGG	1 cut(s)	307
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	305
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	2 cut(s)	289, 598
BstX2I	RGATCY	1 cut(s)	517
BstXI	CCANNNNNNTGG	3 cut(s)	252, 292, 520
BstYI	RGATCY	1 cut(s)	517
Bsu36I	CCTNAGG	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	4 cut(s)	285, 328, 438, 679
BtsIMutI	CAGTG	1 cut(s)	727
Cac8I	GCNNGC	2 cut(s)	584, 616
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	3 cut(s)	138, 160, 401
CseI	GACGC	3 cut(s)	379, 607, 617
Csp6I	GTAC	1 cut(s)	570
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	6 cut(s)	223, 292, 531, 579, 588, 641
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	2 cut(s)	134, 375
DpnI	GATC	2 cut(s)	257, 519
DpnII	GATC	2 cut(s)	255, 517
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
EciI	GGCGGA	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	551
Eco47I	GGWCC	3 cut(s)	138, 160, 401
Eco81I	CCTNAGG	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	202
EcoO109I	RGGNCCY	2 cut(s)	138, 401
EcoRII	CCWGG	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	551
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	6 cut(s)	226, 295, 534, 582, 591, 644
FaqI	GGGAC	4 cut(s)	124, 146, 309, 387
FatI	CATG	6 cut(s)	222, 291, 530, 578, 587, 640
FauI	CCCGC	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	303, 426, 612
FokI	GGATG	4 cut(s)	272, 335, 445, 686
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	3 cut(s)	303, 426, 612
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	3 cut(s)	303, 426, 612
GsaI	CCCAGC	2 cut(s)	635, 667
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	3 cut(s)	379, 607, 617
Hin1II	CATG	6 cut(s)	226, 295, 534, 582, 591, 644
HinfI	GANTC	4 cut(s)	27, 297, 502, 703
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	3 cut(s)	22, 88, 547
Hpy188I	TCNGA	2 cut(s)	378, 464
Hpy188III	TCNNGA	1 cut(s)	494
Hpy99I	CGWCG	1 cut(s)	611
HpyCH4III	ACNGT	2 cut(s)	184, 731
HpyCH4V	TGCA	2 cut(s)	457, 582
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 128, 611, 641
HpyF3I	CTNAG	2 cut(s)	134, 375
Hsp92II	CATG	6 cut(s)	226, 295, 534, 582, 591, 644
KflI	GGGWCCC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	255, 517
LpnPI	CCDG	7 cut(s)	32, 261, 292, 319, 506, 645, 649
Lsp1109I	GCAGC	2 cut(s)	289, 598
LweI	GCATC	2 cut(s)	216, 664
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	28, 178
MalI	GATC	2 cut(s)	257, 519
MboI	GATC	2 cut(s)	255, 517
MboII	GAAGA	5 cut(s)	160, 355, 647, 650, 701
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	2 cut(s)	133, 595
MluCI	AATT	1 cut(s)	352
MlyI	GAGTC	2 cut(s)	36, 291
MmeI	TCCRAC	2 cut(s)	33, 651
MnlI	CCTC	5 cut(s)	26, 292, 299, 655, 717
MseI	TTAA	3 cut(s)	386, 564, 599
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	307
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	4 cut(s)	113, 128, 611, 641
NdeII	GATC	2 cut(s)	255, 517
NlaIII	CATG	6 cut(s)	226, 295, 534, 582, 591, 644
NlaIV	GGNNCC	7 cut(s)	140, 162, 242, 280, 402, 403, 629
NmuCI	GTSAC	2 cut(s)	28, 178
NspI	RCATGY	1 cut(s)	644
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PfeI	GAWTC	2 cut(s)	502, 703
PinAI	ACCGGT	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	304, 427, 613
PleI	GAGTC	2 cut(s)	35, 291
PpsI	GAGTC	2 cut(s)	35, 291
PpuMI	RGGWCCY	2 cut(s)	138, 401
Psp5II	RGGWCCY	2 cut(s)	138, 401
Psp6I	CCWGG	1 cut(s)	305
PspFI	CCCAGC	2 cut(s)	631, 663
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	7 cut(s)	140, 162, 242, 280, 402, 403, 629
PspPI	GGNCC	3 cut(s)	138, 160, 401
PspPPI	RGGWCCY	2 cut(s)	138, 401
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	386, 564, 599
SatI	GCNGC	3 cut(s)	303, 426, 612
Sau3AI	GATC	2 cut(s)	255, 517
Sau96I	GGNCC	3 cut(s)	138, 160, 401
SchI	GAGTC	2 cut(s)	36, 291
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	2 cut(s)	133, 595
SetI	ASST	3 cut(s)	18, 140, 491
SfaNI	GCATC	2 cut(s)	216, 664
SinI	GGWCC	3 cut(s)	138, 160, 401
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	3 cut(s)	320, 425, 545
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	184, 731
TaqI	TCGA	3 cut(s)	217, 493, 595
TasI	AATT	1 cut(s)	352
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	2 cut(s)	502, 703
Tru1I	TTAA	3 cut(s)	386, 564, 599
Tru9I	TTAA	3 cut(s)	386, 564, 599
TscAI	CASTG	1 cut(s)	734
TseFI	GTSAC	2 cut(s)	28, 178
TseI	GCWGC	2 cut(s)	302, 611
Tsp45I	GTSAC	2 cut(s)	28, 178
TspDTI	ATGAA	2 cut(s)	323, 567
TspGWI	ACGGA	2 cut(s)	166, 495
TspRI	CASTG	1 cut(s)	734
VpaK11BI	GGWCC	3 cut(s)	138, 160, 401
XceI	RCATGY	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	2 cut(s)	154, 537
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.