Rmu_sc0001758.1_g000012

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001758.1
OG0015993
Physical Location & Seq
Reverse (-)
51013 .. 53653
2641 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 876 bp
atggaggtgcttcagaaaatctgtcagtctattcttctatgtacagttttcattgttctttgtttggaggcttccccttgctttgctttcacttcgttcgtgtttggggactctctggttgatgcaggaaacaatgactacatcttcacgctctcgaaagccgactcgcctccttatggcatcgattttaaggcttcaggtggacgacccaccggtaggttcacaaatggtcgaaccatatcggacatcataggtcaagaacttggagccaaatcatttccaccaccttatctagccccagacaccgaagccagctcaattctcagaggaattaattatgcttctggagcctccggaatattagatgaaacagggtttttgtttcgactgcacgagttgggagctagaaagttcattgtggttggagttggaccactgggttgcatacccttcattcgtgccgttaatcttttaccaagtggtcactgctttggtgaagtgaattatttgatccaaggctacaataagaaactcaatggtttgttggatcaactgaaccaggtgttgggtcctgaagctatctttgtgtatgcaaattcttatgacatcttcatgaagatcatagtgaattatcatcaatatgggtttaaggatgcggacgcaccgtgttgtggtggatactttccaccatttctttgcttcatgggaaggaacacaagctctcccctgtgtagtgatcgatccaagtatgtgttttgggatgcttatcatccaacagaggctgctaatgtcatcatagctaagaggttgcttgatggagatgaaagtattacctcacctattaatatccgggagctttataactacaattcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

291

Amino Acids

31.94

Weight (kDa)

5.39

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 130 - 270 3.2e-14 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015993)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41890
fragaria_vesca FvH4_5g10830
malus_domestica MD06G1120400.v1.1
prunus_persica Prupe.5G130900_v2.0.a1
pyrus_communis pycom06g11170
rosa_chinensis RchiOBHm_Chr7g0187331
rosa_laevigata RLG00000004794
rosa_multiflora Rmu_sc0001758.1_g000012
rosa_roxburghii Rroxscaffold_3G00267600
rosa_rugosa Rorug06G0480600.1
rosa_samantha Rh7AG085100 Rh7BG077500 Rh7CG086100 Rh7DG087200
rosa_wichuraiana Rw7G007480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 861
AccB7I CCANNNNNTGG 1 cut(s) 565
AccIII TCCGGA 1 cut(s) 353
AciI CCGC 1 cut(s) 656
AclWI GGATC 3 cut(s) 505, 555, 735
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 2 cut(s) 180, 594
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 4 cut(s) 176, 216, 565, 671
AgeI ACCGGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 558
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AluBI AGCT 6 cut(s) 315, 404, 578, 720, 800, 856
AluI AGCT 6 cut(s) 315, 404, 578, 720, 800, 856
AlwI GGATC 3 cut(s) 505, 555, 735
AlwNI CAGNNNCTG 1 cut(s) 782
Aor13HI TCCGGA 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 782
ApoI RAATTY 1 cut(s) 595
AseI ATTAAT 2 cut(s) 333, 843
AsiGI ACCGGT 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 431, 569
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 2 cut(s) 506, 828
AvaII GGWCC 2 cut(s) 431, 569
BauI CACGAG 1 cut(s) 392
BbvI GCAGC 1 cut(s) 769
BccI CCATC 1 cut(s) 809
BceAI ACGGC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 560
BciVI GTATCC 1 cut(s) 671
BcnI CCSGG 1 cut(s) 851
BfaI CTAG 2 cut(s) 293, 405
BfuI GTATCC 1 cut(s) 671
BisI GCNGC 1 cut(s) 783
BlsI GCNGC 1 cut(s) 784
Bme1390I CCNGG 2 cut(s) 560, 851
Bme18I GGWCC 2 cut(s) 431, 569
BmgT120I GGNCC 2 cut(s) 431, 569
BmiI GGNNCC 3 cut(s) 268, 349, 570
BmrFI CCNGG 2 cut(s) 560, 851
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 4 cut(s) 112, 189, 643, 751
BmuI ACTGGG 1 cut(s) 446
BpmI CTGGAG 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 851
Bsa29I ATCGAT 2 cut(s) 183, 739
BsaBI GATNNNNATC 1 cut(s) 765
BsaJI CCNNGG 1 cut(s) 514
BsaWI WCCGGW 2 cut(s) 212, 353
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 216, 565, 671
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 765
BseAI TCCGGA 1 cut(s) 353
BseBI CCWGG 1 cut(s) 560
BseCI ATCGAT 2 cut(s) 183, 739
BseDI CCNNGG 1 cut(s) 514
BseGI GGATG 3 cut(s) 658, 766, 769
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 4 cut(s) 176, 216, 565, 671
BseMII CTCAG 1 cut(s) 337
BseNI ACTGG 1 cut(s) 441
BseXI GCAGC 1 cut(s) 769
BsgI GTGCAG 1 cut(s) 374
BshTI ACCGGT 1 cut(s) 212
BshVI ATCGAT 2 cut(s) 183, 739
BsiSI CCGG 3 cut(s) 213, 354, 850
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 4 cut(s) 176, 216, 565, 671
BsmFI GGGAC 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 353
Bsp1407I TGTACA 1 cut(s) 41
Bsp143I GATC 5 cut(s) 510, 547, 618, 736, 740
BspACI CCGC 1 cut(s) 656
BspCNI CTCAG 1 cut(s) 336
BspDI ATCGAT 2 cut(s) 183, 739
BspEI TCCGGA 1 cut(s) 353
BspHI TCATGA 1 cut(s) 612
BspLI GGNNCC 3 cut(s) 268, 349, 570
BspPI GGATC 3 cut(s) 505, 555, 735
BsrFI RCCGGY 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 41
BsrI ACTGG 1 cut(s) 441
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 5 cut(s) 510, 547, 618, 736, 740
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 514
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 560
Bst4CI ACNGT 2 cut(s) 46, 666
BstAUI TGTACA 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 3 cut(s) 323, 801, 873
BstF5I GGATG 3 cut(s) 658, 766, 769
BstKTI GATC 5 cut(s) 513, 550, 621, 739, 743
BstMBI GATC 5 cut(s) 510, 547, 618, 736, 740
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNI CCWGG 1 cut(s) 560
BstSCI CCNGG 2 cut(s) 558, 849
BstV1I GCAGC 1 cut(s) 769
Bsu15I ATCGAT 2 cut(s) 183, 739
BsuI GTATCC 1 cut(s) 671
BsuTUI ATCGAT 2 cut(s) 183, 739
BtsCI GGATG 3 cut(s) 658, 766, 769
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 2 cut(s) 434, 484
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 782
CciI TCATGA 1 cut(s) 612
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 431, 569
ClaI ATCGAT 2 cut(s) 183, 739
CseI GACGC 1 cut(s) 668
CsiI ACCWGGT 1 cut(s) 558
Csp6I GTAC 1 cut(s) 42
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 2 cut(s) 613, 703
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 3 cut(s) 323, 801, 873
DpnI GATC 5 cut(s) 512, 549, 620, 738, 742
DpnII GATC 5 cut(s) 510, 547, 618, 736, 740
Eco130I CCWWGG 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 431, 569
Eco57I CTGAAG 2 cut(s) 180, 594
EcoO109I RGGNCCY 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 558
EcoT14I CCWWGG 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 2 cut(s) 616, 706
FaqI GGGAC 1 cut(s) 122
FatI CATG 2 cut(s) 612, 702
Fnu4HI GCNGC 1 cut(s) 783
FokI GGATG 3 cut(s) 665, 756, 773
Fsp4HI GCNGC 1 cut(s) 783
FspBI CTAG 2 cut(s) 293, 405
GluI GCNGC 1 cut(s) 783
GsuI CTGGAG 1 cut(s) 366
HapII CCGG 3 cut(s) 213, 354, 850
HgaI GACGC 1 cut(s) 668
Hin1II CATG 2 cut(s) 616, 706
HinfI GANTC 2 cut(s) 110, 164
HpaII CCGG 3 cut(s) 213, 354, 850
HphI GGTGA 2 cut(s) 506, 828
Hpy166II GTNNAC 2 cut(s) 203, 222
Hpy188I TCNGA 3 cut(s) 15, 244, 326
Hpy188III TCNNGA 6 cut(s) 154, 257, 345, 354, 572, 613
Hpy8I GTNNAC 2 cut(s) 203, 222
HpyAV CCTTC 2 cut(s) 460, 702
HpyCH4III ACNGT 2 cut(s) 46, 666
HpyCH4V TGCA 4 cut(s) 125, 391, 444, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 3 cut(s) 323, 801, 873
Hsp92II CATG 2 cut(s) 616, 706
Kpn2I TCCGGA 1 cut(s) 353
Kzo9I GATC 5 cut(s) 510, 547, 618, 736, 740
LmnI GCTCC 4 cut(s) 266, 347, 401, 853
Lsp1109I GCAGC 1 cut(s) 769
LweI GCATC 4 cut(s) 112, 189, 643, 751
MabI ACCWGGT 1 cut(s) 558
MaeI CTAG 2 cut(s) 293, 405
MaeIII GTNAC 1 cut(s) 482
MalI GATC 5 cut(s) 512, 549, 620, 738, 742
MboI GATC 5 cut(s) 510, 547, 618, 736, 740
MboII GAAGA 4 cut(s) 26, 136, 601, 628
MluCI AATT 7 cut(s) 318, 330, 334, 502, 595, 628, 868
MlyI GAGTC 2 cut(s) 104, 158
MmeI TCCRAC 4 cut(s) 403, 409, 525, 797
MnlI CCTC 7 cut(s) 61, 180, 320, 361, 772, 798, 844
MroI TCCGGA 1 cut(s) 353
MseI TTAA 5 cut(s) 189, 333, 465, 648, 843
MslI CAYNNNNRTG 2 cut(s) 611, 639
MspI CCGG 3 cut(s) 213, 354, 850
MspR9I CCNGG 2 cut(s) 560, 851
MvaI CCWGG 1 cut(s) 560
MwoI GCNNNNNNNGC 1 cut(s) 347
NciI CCSGG 1 cut(s) 851
NdeII GATC 5 cut(s) 510, 547, 618, 736, 740
NlaIII CATG 2 cut(s) 616, 706
NlaIV GGNNCC 3 cut(s) 268, 349, 570
NmuCI GTSAC 1 cut(s) 482
PagI TCATGA 1 cut(s) 612
PflMI CCANNNNNTGG 1 cut(s) 565
PfoI TCCNGGA 1 cut(s) 849
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 1 cut(s) 784
PleI GAGTC 2 cut(s) 104, 158
PpsI GAGTC 2 cut(s) 104, 158
PpuMI RGGWCCY 1 cut(s) 569
PshBI ATTAAT 2 cut(s) 333, 843
PsiI TTATAA 1 cut(s) 861
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 558
PspGI CCWGG 1 cut(s) 558
PspN4I GGNNCC 3 cut(s) 268, 349, 570
PspPI GGNCC 2 cut(s) 431, 569
PspPPI RGGWCCY 1 cut(s) 569
PstNI CAGNNNCTG 1 cut(s) 782
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 2 cut(s) 611, 639
SaqAI TTAA 5 cut(s) 189, 333, 465, 648, 843
SatI GCNGC 1 cut(s) 783
Sau3AI GATC 5 cut(s) 510, 547, 618, 736, 740
Sau96I GGNCC 2 cut(s) 431, 569
SchI GAGTC 2 cut(s) 104, 158
ScrFI CCNGG 2 cut(s) 560, 851
SexAI ACCWGGT 1 cut(s) 558
SfaNI GCATC 4 cut(s) 112, 189, 643, 751
SinI GGWCC 2 cut(s) 431, 569
SmiMI CAYNNNNRTG 2 cut(s) 611, 639
Sse9I AATT 7 cut(s) 318, 330, 334, 502, 595, 628, 868
SsiI CCGC 1 cut(s) 656
SspI AATATT 1 cut(s) 360
SspMI CTAG 2 cut(s) 293, 405
StyD4I CCNGG 2 cut(s) 558, 849
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 2 cut(s) 46, 666
TaqI TCGA 5 cut(s) 155, 183, 232, 385, 739
TasI AATT 7 cut(s) 318, 330, 334, 502, 595, 628, 868
TatI WGTACW 1 cut(s) 41
Tru1I TTAA 5 cut(s) 189, 333, 465, 648, 843
Tru9I TTAA 5 cut(s) 189, 333, 465, 648, 843
TscAI CASTG 2 cut(s) 441, 491
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 1 cut(s) 782
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 8 cut(s) 40, 381, 403, 442, 601, 629, 691, 837
TspRI CASTG 2 cut(s) 441, 491
Van91I CCANNNNNTGG 1 cut(s) 565
VpaK11BI GGWCC 2 cut(s) 431, 569
VspI ATTAAT 2 cut(s) 333, 843
XapI RAATTY 1 cut(s) 595
XspI CTAG 2 cut(s) 293, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.