Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001770.1

Orthogroup ID

OG0012079

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3951

Gene Structure 3951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

gtggaaaatactggcacttctcctgtttcagaagtgcttcttgctttcccacctacacaggttgatcacatagcatcactcaaagcagctgttaccattggaaagaagaaaaagaaaagttatgtgcctcttgaagtgaatcctactgaactacctgatgcaccaaatgggactaagtactttaaaatattgttgctcaacccattgagtgctggtgaaactgcaacactagaagtgctttatatattgacacattctctggagcctttcccagcagaaataagccaatcggagtcacagttggtctattaccgggatagtgcaataatattgtctccctattatattaagcaacagactacgtttataagaactcctagtactaaggtggagtcatttactagagtagaacccactacacgtgctggtaccgagctgaagtatggaccgtacaaggatcgccctgcatactcatattctccagttcttgttcattttgagaataacagtccatttgctgttgttgaggaacttgtacgtgaggtggaaatatctcactggggaagtcttcagatcacggaacattacactctagcacatgctggtgctcgacacaaaggtgttttttcgagggttgattatcaaggtcggtctagtggtgtctcttcattcaaacatctcctagcaagactacctcctagggtccattcagtcttctaccgagatcaaattgggaacatctcgtcatcacatttgcgtacagattatcgaaggtcagatcttgaaattgaaccgaggtatcctttatttggaggttggaaagctacttttttaatcgggtatggactaccattgcaagacttcctttttgagtcacctgatggcaggcgatacctcaatttcacctttggttgtcctcttgctgagacggtggtagacaagttaaccctcaaagttgtgctaccagagggatcgaaagatccatctgctgtggttccttttacagttgagcaacatctagagaccaaatactcataccttgatgtcgttgggaggacagtggtcgttcttgagaagaaaaatgtagttccggagcataattctcctttccaggtctactacagcttcaacccagttttcatgctggcagaaccgctgatgttgatatcttatctcctgaattatcaaagcttagatgaccaagtggagcagtgcaaccaggacactcttgagtgccagtcattttggattttacttatttcagtcaatcagatatatgatgtaggttactatgagaaaattttgttgtgcattgcccgcttgctttatgaaactgaacctataccccacactttattgttgtcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Ribophorin_I

Protein Analysis

455

Amino Acids

51.62

Weight (kDa)

5.94

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribophorin_I	PF04597	1 - 393	6.1e-136	Ribophorin I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01720
fragaria_vesca	FvH4_7g19320 FvH4_7g19320 FvH4_7g19320 FvH4_7g19320
malus_domestica	MD01G1107800.v1.1 MD07G1173400.v1.1
prunus_persica	Prupe.2G212600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363201
rosa_laevigata	RLG00000027584
rosa_multiflora	Rmu_sc0001770.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293380
rosa_rugosa	Rorug01G0305400 Rorug01G0305500
rosa_samantha	Rh1AG314200 Rh1BG277700 Rh1CG294100 Rh1DG308400
rosa_wichuraiana	Rw1G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
Acc65I	GGTACC	1 cut(s)	428
AccB1I	GGYRCC	1 cut(s)	428
AccI	GTMKAC	2 cut(s)	936, 1116
AccIII	TCCGGA	1 cut(s)	1090
AciI	CCGC	2 cut(s)	1154, 1318
AclWI	GGATC	3 cut(s)	465, 974, 979
AcsI	RAATTY	1 cut(s)	1299
AcuI	CTGAAG	2 cut(s)	458, 554
AcvI	CACGTG	1 cut(s)	422
AfaI	GTAC	6 cut(s)	179, 382, 430, 452, 537, 760
AfiI	CCNNNNNNNGG	1 cut(s)	809
AflIII	ACRYGT	1 cut(s)	419
AgsI	TTSAA	5 cut(s)	134, 673, 785, 791, 1129
AjnI	CCWGG	2 cut(s)	1110, 1218
AleI	CACNNNNGTG	1 cut(s)	618
AluBI	AGCT	5 cut(s)	89, 436, 824, 1125, 1191
AluI	AGCT	5 cut(s)	89, 436, 824, 1125, 1191
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	4 cut(s)	339, 667, 920, 1016
AlwI	GGATC	3 cut(s)	465, 974, 979
Aor13HI	TCCGGA	1 cut(s)	1090
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	1299
ArsI	GACNNNNNNTTYG	2 cut(s)	851, 883
Asp700I	GAANNNNTTC	1 cut(s)	36
Asp718I	GGTACC	1 cut(s)	428
AspA2I	CCTAGG	1 cut(s)	698
AspS9I	GGNCC	2 cut(s)	446, 703
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	3 cut(s)	227, 867, 895
AvaII	GGWCC	2 cut(s)	446, 703
AvrII	CCTAGG	1 cut(s)	698
BaeI	ACNNNNGTAYC	2 cut(s)	782, 815
BanI	GGYRCC	1 cut(s)	428
BbrPI	CACGTG	1 cut(s)	422
BbsI	GAAGAC	2 cut(s)	560, 706
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	2 cut(s)	875, 991
BciT130I	CCWGG	2 cut(s)	1112, 1220
BciVI	GTATCC	1 cut(s)	810
BclI	TGATCA	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	4 cut(s)	339, 667, 920, 1016
BfaI	CTAG	8 cut(s)	230, 378, 402, 593, 654, 683, 699, 1019
BfmI	CTRYAG	1 cut(s)	1120
BfuI	GTATCC	1 cut(s)	810
BglII	AGATCT	1 cut(s)	778
BisI	GCNGC	1 cut(s)	87
BlnI	CCTAGG	1 cut(s)	698
BlsI	GCNGC	1 cut(s)	88
BmcAI	AGTACT	2 cut(s)	179, 382
Bme1390I	CCNGG	3 cut(s)	314, 1112, 1220
Bme18I	GGWCC	2 cut(s)	446, 703
BmgT120I	GGNCC	2 cut(s)	446, 703
BmiI	GGNNCC	4 cut(s)	264, 430, 704, 996
BmrFI	CCNGG	3 cut(s)	314, 1112, 1220
BmrI	ACTGGG	2 cut(s)	568, 1127
BmsI	GCATC	2 cut(s)	83, 148
BmuI	ACTGGG	2 cut(s)	568, 1127
BoxI	GACNNNNGTC	1 cut(s)	1061
BpiI	GAAGAC	2 cut(s)	560, 706
BpmI	CTGGAG	2 cut(s)	281, 465
BpuEI	CTTGAG	2 cut(s)	1091, 1250
BpuMI	CCSGG	1 cut(s)	314
BsaAI	YACGTR	2 cut(s)	422, 539
BsaI	GGTCTC	1 cut(s)	1016
BsaJI	CCNNGG	2 cut(s)	698, 794
BsaWI	WCCGGW	1 cut(s)	1090
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	809
Bse1I	ACTGG	5 cut(s)	16, 482, 563, 1133, 1237
Bse3DI	GCAATG	2 cut(s)	851, 1311
BseAI	TCCGGA	1 cut(s)	1090
BseBI	CCWGG	2 cut(s)	1112, 1220
BseDI	CCNNGG	2 cut(s)	698, 794
BseLI	CCNNNNNNNGG	1 cut(s)	809
BseMI	GCAATG	2 cut(s)	851, 1311
BseMII	CTCAG	1 cut(s)	915
BseNI	ACTGG	5 cut(s)	16, 482, 563, 1133, 1237
BseXI	GCAGC	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	271
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	313, 1091
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	809
BsmAI	GTCTC	4 cut(s)	339, 667, 920, 1016
BsmBI	CGTCTC	1 cut(s)	920
BsmFI	GGGAC	1 cut(s)	184
Bso31I	GGTCTC	1 cut(s)	1016
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp13I	TCCGGA	1 cut(s)	1090
Bsp143I	GATC	7 cut(s)	64, 457, 573, 724, 778, 971, 979
BspACI	CCGC	2 cut(s)	1154, 1318
BspCNI	CTCAG	1 cut(s)	916
BspEI	TCCGGA	1 cut(s)	1090
BspLI	GGNNCC	4 cut(s)	264, 430, 704, 996
BspPI	GGATC	3 cut(s)	465, 974, 979
BspT107I	GGYRCC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	1016
BsrDI	GCAATG	2 cut(s)	851, 1311
BsrI	ACTGG	5 cut(s)	16, 482, 563, 1133, 1237
BssECI	CCNNGG	2 cut(s)	698, 794
BssMI	GATC	7 cut(s)	64, 457, 573, 724, 778, 971, 979
BssT1I	CCWWGG	1 cut(s)	698
Bst2UI	CCWGG	2 cut(s)	1112, 1220
Bst4CI	ACNGT	6 cut(s)	300, 450, 509, 931, 1006, 1060
Bst6I	CTCTTC	1 cut(s)	670
BstBAI	YACGTR	2 cut(s)	422, 539
BstC8I	GCNNGC	4 cut(s)	887, 1146, 1318, 1322
BstDEI	CTNAG	5 cut(s)	174, 384, 924, 1192, 1365
BstKTI	GATC	7 cut(s)	67, 460, 576, 727, 781, 974, 982
BstMAI	GTCTC	4 cut(s)	339, 667, 920, 1016
BstMBI	GATC	7 cut(s)	64, 457, 573, 724, 778, 971, 979
BstMWI	GCNNNNNNNGC	1 cut(s)	1317
BstNI	CCWGG	2 cut(s)	1112, 1220
BstNSI	RCATGY	1 cut(s)	602
BstPAI	GACNNNNGTC	1 cut(s)	1061
BstSCI	CCNGG	3 cut(s)	312, 1110, 1218
BstSFI	CTRYAG	1 cut(s)	1120
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	2 cut(s)	560, 706
BstX2I	RGATCY	2 cut(s)	778, 979
BstYI	RGATCY	2 cut(s)	778, 979
BsuI	GTATCC	1 cut(s)	810
BtsI	GCAGTG	1 cut(s)	1217
BtsIMutI	CAGTG	3 cut(s)	556, 1065, 1217
Cac8I	GCNNGC	4 cut(s)	887, 1146, 1318, 1322
Cfr13I	GGNCC	2 cut(s)	446, 703
Csp6I	GTAC	6 cut(s)	178, 381, 429, 451, 536, 759
CviAII	CATG	2 cut(s)	599, 1141
CviJI	RGCY	7 cut(s)	89, 265, 285, 436, 824, 1125, 1191
CviKI_1	RGCY	7 cut(s)	89, 265, 285, 436, 824, 1125, 1191
CviQI	GTAC	6 cut(s)	178, 381, 429, 451, 536, 759
DdeI	CTNAG	5 cut(s)	174, 384, 924, 1192, 1365
DpnI	GATC	7 cut(s)	66, 459, 575, 726, 780, 973, 981
DpnII	GATC	7 cut(s)	64, 457, 573, 724, 778, 971, 979
DraI	TTTAAA	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	670
EarI	CTCTTC	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	698
Eco31I	GGTCTC	1 cut(s)	1016
Eco32I	GATATC	1 cut(s)	1167
Eco47I	GGWCC	2 cut(s)	446, 703
Eco57I	CTGAAG	2 cut(s)	458, 554
Eco72I	CACGTG	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	1110, 1218
EcoRV	GATATC	1 cut(s)	1167
EcoT14I	CCWWGG	1 cut(s)	698
ErhI	CCWWGG	1 cut(s)	698
Esp3I	CGTCTC	1 cut(s)	920
FaeI	CATG	2 cut(s)	602, 1144
FalI	AAGNNNNNCTT	4 cut(s)	24, 56, 849, 881
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	598, 1140
FauI	CCCGC	1 cut(s)	1325
FbaI	TGATCA	1 cut(s)	64
FblI	GTMKAC	2 cut(s)	936, 1116
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	8 cut(s)	230, 378, 402, 593, 654, 683, 699, 1019
GluI	GCNGC	1 cut(s)	87
GsaI	CCCAGC	1 cut(s)	275
GsuI	CTGGAG	2 cut(s)	281, 465
HapII	CCGG	2 cut(s)	313, 1091
Hin1II	CATG	2 cut(s)	602, 1144
HincII	GTYRAC	1 cut(s)	945
HindII	GTYRAC	1 cut(s)	945
HindIII	AAGCTT	1 cut(s)	1189
HinfI	GANTC	4 cut(s)	139, 293, 392, 872
HpaI	GTTAAC	1 cut(s)	945
HpaII	CCGG	2 cut(s)	313, 1091
HphI	GGTGA	3 cut(s)	227, 867, 895
Hpy166II	GTNNAC	3 cut(s)	937, 945, 1117
Hpy188I	TCNGA	5 cut(s)	31, 292, 573, 778, 1272
Hpy188III	TCNNGA	8 cut(s)	131, 260, 782, 1019, 1070, 1091, 1177, 1229
Hpy8I	GTNNAC	3 cut(s)	937, 945, 1117
HpyAV	CCTTC	1 cut(s)	765
HpyCH4III	ACNGT	6 cut(s)	300, 450, 509, 931, 1006, 1060
HpyCH4IV	ACGT	3 cut(s)	362, 421, 538
HpyCH4V	TGCA	7 cut(s)	161, 224, 323, 467, 856, 1215, 1311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1317
HpyF3I	CTNAG	5 cut(s)	174, 384, 924, 1192, 1365
HpySE526I	ACGT	3 cut(s)	362, 421, 538
Hsp92II	CATG	2 cut(s)	602, 1144
Kpn2I	TCCGGA	1 cut(s)	1090
KpnI	GGTACC	1 cut(s)	432
Ksp22I	TGATCA	1 cut(s)	64
KspAI	GTTAAC	1 cut(s)	945
Kzo9I	GATC	7 cut(s)	64, 457, 573, 724, 778, 971, 979
LmnI	GCTCC	3 cut(s)	262, 1093, 1207
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	2 cut(s)	83, 148
MaeI	CTAG	8 cut(s)	230, 378, 402, 593, 654, 683, 699, 1019
MaeII	ACGT	3 cut(s)	362, 421, 538
MaeIII	GTNAC	4 cut(s)	91, 294, 873, 1286
MalI	GATC	7 cut(s)	66, 459, 575, 726, 780, 973, 981
MboI	GATC	7 cut(s)	64, 457, 573, 724, 778, 971, 979
MboII	GAAGA	5 cut(s)	118, 560, 657, 706, 1087
MflI	RGATCY	2 cut(s)	778, 979
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	6 cut(s)	729, 786, 898, 1099, 1180, 1299
MlyI	GAGTC	3 cut(s)	302, 401, 881
MmeI	TCCRAC	1 cut(s)	797
MroI	TCCGGA	1 cut(s)	1090
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	4 cut(s)	183, 348, 833, 944
MslI	CAYNNNNRTG	2 cut(s)	603, 618
MspA1I	CMGCKG	2 cut(s)	89, 1156
MspI	CCGG	2 cut(s)	313, 1091
MspR9I	CCNGG	3 cut(s)	314, 1112, 1220
MvaI	CCWGG	2 cut(s)	1112, 1220
MwoI	GCNNNNNNNGC	1 cut(s)	1317
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	7 cut(s)	64, 457, 573, 724, 778, 971, 979
NlaIII	CATG	2 cut(s)	602, 1144
NlaIV	GGNNCC	4 cut(s)	264, 430, 704, 996
NmuCI	GTSAC	2 cut(s)	294, 873
NspI	RCATGY	1 cut(s)	602
OliI	CACNNNNGTG	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	3 cut(s)	301, 400, 880
PmaCI	CACGTG	1 cut(s)	422
PmlI	CACGTG	1 cut(s)	422
PpsI	GAGTC	3 cut(s)	301, 400, 880
Ppu21I	YACGTR	2 cut(s)	422, 539
PshAI	GACNNNNGTC	1 cut(s)	1061
PsiI	TTATAA	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	1110, 1218
PspCI	CACGTG	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	271
PspGI	CCWGG	2 cut(s)	1110, 1218
PspN4I	GGNNCC	4 cut(s)	264, 430, 704, 996
PspPI	GGNCC	2 cut(s)	446, 703
PsrI	GAACNNNNNNTAC	2 cut(s)	364, 396
PsuI	RGATCY	2 cut(s)	778, 979
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	6 cut(s)	179, 382, 430, 452, 537, 760
RsaNI	GTAC	6 cut(s)	178, 381, 429, 451, 536, 759
RseI	CAYNNNNRTG	2 cut(s)	603, 618
SaqAI	TTAA	4 cut(s)	183, 348, 833, 944
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	7 cut(s)	64, 457, 573, 724, 778, 971, 979
Sau96I	GGNCC	2 cut(s)	446, 703
ScaI	AGTACT	2 cut(s)	179, 382
SchI	GAGTC	3 cut(s)	302, 401, 881
ScrFI	CCNGG	3 cut(s)	314, 1112, 1220
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	2 cut(s)	83, 148
SfcI	CTRYAG	1 cut(s)	1120
SinI	GGWCC	2 cut(s)	446, 703
SmiMI	CAYNNNNRTG	2 cut(s)	603, 618
SmlI	CTYRAG	2 cut(s)	1070, 1229
SmoI	CTYRAG	2 cut(s)	1070, 1229
Sse9I	AATT	6 cut(s)	729, 786, 898, 1099, 1180, 1299
SsiI	CCGC	2 cut(s)	1154, 1318
SspI	AATATT	2 cut(s)	189, 330
SspMI	CTAG	8 cut(s)	230, 378, 402, 593, 654, 683, 699, 1019
StyD4I	CCNGG	3 cut(s)	312, 1110, 1218
StyI	CCWWGG	1 cut(s)	698
TaaI	ACNGT	6 cut(s)	300, 450, 509, 931, 1006, 1060
TaiI	ACGT	3 cut(s)	365, 424, 541
TaqI	TCGA	4 cut(s)	610, 629, 769, 974
TaqII	GACCGA	1 cut(s)	639
TasI	AATT	6 cut(s)	729, 786, 898, 1099, 1180, 1299
TatI	WGTACW	2 cut(s)	177, 380
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	4 cut(s)	183, 348, 833, 944
Tru9I	TTAA	4 cut(s)	183, 348, 833, 944
TscAI	CASTG	3 cut(s)	563, 1065, 1217
TseFI	GTSAC	2 cut(s)	294, 873
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	2 cut(s)	294, 873
TspDTI	ATGAA	4 cut(s)	482, 657, 1129, 1344
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	3 cut(s)	563, 1065, 1217
VpaK11BI	GGWCC	2 cut(s)	446, 703
XapI	RAATTY	1 cut(s)	1299
XbaI	TCTAGA	1 cut(s)	1018
XceI	RCATGY	1 cut(s)	602
XmaJI	CCTAGG	1 cut(s)	698
XmiI	GTMKAC	2 cut(s)	936, 1116
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	8 cut(s)	230, 378, 402, 593, 654, 683, 699, 1019
ZrmI	AGTACT	2 cut(s)	179, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.