Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002048.1

Orthogroup ID

OG0017996

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 843

Gene Structure 842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 617 bp

atggcgcgcaacctcgccgccatcgaaaccctcctcataaaccgcctctccttaccgccaacgccgtcatccggccaagtgattccggcctcaggcgacgtcgtcggcgaggccaagacctcccacgggttgcaagttaggaactttcaatcgaaatcggtgccgttgaattatcgcgcatcgccgactttgttgagcgccgcccagttcgcagttgaggatggccaatacgacgagtcgtctaaaaagagcggcgacgatggcctcgagatttcgaagctagggattgatcacgagattgtatctgctttggccaagaaggggatcactaagctttttcccattcagagagctgtgttggaaccagcaatgcaagggcgtgatatgattggtcgtgctagaactggaacagggaaaactcttgcatttgggattcccattttggataaaatcattcaattcaatgccaaacatggccgtgggaggaatcctttggctttggtgttggctccgacaagagaacttgcaaagcaagtggacaaggaattctatgaggcagcaccgagtttggatacgatttgtgtgtatggtggtacacccattggaaggcagatggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

206

Amino Acids

22.02

Weight (kDa)

9.38

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	114 - 204	6.1e-20	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017996)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38261
rosa_multiflora	Rmu_sc0002048.1_g000001 Rmu_sc0002048.1_g000003 Rmu_sc0004976.1_g000001 Rmu_sc0025549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421920
rosa_samantha	Rh2AG511100 Rh2BG521800 Rh2CG496200 Rh2DG531700
rosa_wichuraiana	Rw2G042010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	252
AccII	CGCG	2 cut(s)	7, 177
AciI	CCGC	5 cut(s)	18, 43, 56, 201, 252
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	4 cut(s)	73, 223, 312, 475
AcsI	RAATTY	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	5 cut(s)	71, 92, 126, 321, 606
AgsI	TTSAA	4 cut(s)	149, 169, 458, 463
AhdI	GACNNNNNGTC	1 cut(s)	238
AluBI	AGCT	3 cut(s)	280, 334, 353
AluI	AGCT	3 cut(s)	280, 334, 353
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	7 cut(s)	73, 87, 111, 223, 262, 312, 475
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	1 cut(s)	545
AspLEI	GCGC	4 cut(s)	7, 9, 179, 200
AsuII	TTCGAA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	266
AxyI	CCTNAGG	1 cut(s)	91
BalI	TGGCCA	2 cut(s)	225, 314
BanI	GGYRCC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	4 cut(s)	29, 215, 254, 607
BceAI	ACGGC	3 cut(s)	49, 148, 462
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciVI	GTATCC	1 cut(s)	565
BclI	TGATCA	1 cut(s)	289
BfaI	CTAG	2 cut(s)	281, 399
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	565
BisI	GCNGC	4 cut(s)	18, 201, 253, 558
BlsI	GCNGC	4 cut(s)	19, 202, 254, 559
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	266
BmiI	GGNNCC	3 cut(s)	162, 363, 510
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	188
BmuI	ACTGGG	1 cut(s)	199
Bpu14I	TTCGAA	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	124, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	5 cut(s)	71, 92, 126, 321, 606
Bse1I	ACTGG	2 cut(s)	205, 409
Bse21I	CCTNAGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	124, 478
BseGI	GGATG	2 cut(s)	68, 226
BseLI	CCNNNNNNNGG	5 cut(s)	71, 92, 126, 321, 606
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	2 cut(s)	205, 409
BsePI	GCGCGC	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	569
Bsh1236I	CGCG	2 cut(s)	7, 177
BshFI	GGCC	7 cut(s)	75, 89, 113, 225, 264, 314, 477
BshNI	GGYRCC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	72, 86
BslI	CCNNNNNNNGG	5 cut(s)	71, 92, 126, 321, 606
BsnI	GGCC	7 cut(s)	75, 89, 113, 225, 264, 314, 477
BsoBI	CYCGRG	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	289, 324
BspACI	CCGC	5 cut(s)	18, 43, 56, 201, 252
BspANI	GGCC	7 cut(s)	75, 89, 113, 225, 264, 314, 477
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	2 cut(s)	7, 177
BspLI	GGNNCC	3 cut(s)	162, 363, 510
BspPI	GGATC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	205, 409
BssECI	CCNNGG	2 cut(s)	124, 478
BssHII	GCGCGC	1 cut(s)	5
BssMI	GATC	2 cut(s)	289, 324
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	99
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	91, 330
BstDSI	CCRYGG	2 cut(s)	124, 478
BstF5I	GGATG	2 cut(s)	68, 226
BstFNI	CGCG	2 cut(s)	7, 177
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	4 cut(s)	7, 9, 179, 200
BstKTI	GATC	2 cut(s)	292, 327
BstMBI	GATC	2 cut(s)	289, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 261
BstUI	CGCG	2 cut(s)	7, 177
BstV1I	GCAGC	1 cut(s)	569
Bsu36I	CCTNAGG	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	565
BsuRI	GGCC	7 cut(s)	75, 89, 113, 225, 264, 314, 477
BtgI	CCRYGG	2 cut(s)	124, 478
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	68, 226
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	4 cut(s)	7, 9, 179, 200
Csp6I	GTAC	1 cut(s)	594
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	1 cut(s)	473
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	2 cut(s)	91, 330
DpnI	GATC	2 cut(s)	291, 326
DpnII	GATC	2 cut(s)	289, 324
DriI	GACNNNNNGTC	1 cut(s)	238
EaeI	YGGCCR	4 cut(s)	73, 223, 312, 475
Eam1105I	GACNNNNNGTC	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	545
FaeI	CATG	1 cut(s)	476
FaiI	YATR	5 cut(s)	38, 386, 474, 552, 588
FatI	CATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	4 cut(s)	18, 201, 253, 558
FokI	GGATG	2 cut(s)	55, 233
Fsp4HI	GCNGC	4 cut(s)	18, 201, 253, 558
FspBI	CTAG	2 cut(s)	281, 399
GlaI	GCGC	4 cut(s)	6, 8, 178, 199
GluI	GCNGC	4 cut(s)	18, 201, 253, 558
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	7 cut(s)	75, 89, 113, 225, 264, 314, 477
HapII	CCGG	2 cut(s)	72, 86
HhaI	GCGC	4 cut(s)	7, 9, 179, 200
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	476
Hin6I	GCGC	4 cut(s)	5, 7, 177, 198
HinP1I	GCGC	4 cut(s)	5, 7, 177, 198
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	4 cut(s)	82, 236, 433, 487
HpaII	CCGG	2 cut(s)	72, 86
Hpy166II	GTNNAC	2 cut(s)	538, 596
Hpy188I	TCNGA	2 cut(s)	348, 513
Hpy188III	TCNNGA	2 cut(s)	268, 293
Hpy8I	GTNNAC	2 cut(s)	538, 596
Hpy99I	CGWCG	5 cut(s)	101, 104, 107, 236, 260
HpyAV	CCTTC	2 cut(s)	313, 600
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	133, 373, 425, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 261
HpyF3I	CTNAG	2 cut(s)	91, 330
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	476
HspAI	GCGC	4 cut(s)	5, 7, 177, 198
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	289, 324
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	7 cut(s)	78, 85, 99, 218, 378, 390, 396
Lsp1109I	GCAGC	1 cut(s)	569
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	2 cut(s)	281, 399
MaeII	ACGT	1 cut(s)	99
MalI	GATC	2 cut(s)	291, 326
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	2 cut(s)	289, 324
MlsI	TGGCCA	2 cut(s)	225, 314
MluCI	AATT	3 cut(s)	169, 458, 545
MluNI	TGGCCA	2 cut(s)	225, 314
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	339, 536
Mox20I	TGGCCA	2 cut(s)	225, 314
MscI	TGGCCA	2 cut(s)	225, 314
MslI	CAYNNNNRTG	1 cut(s)	477
Msp20I	TGGCCA	2 cut(s)	225, 314
MspI	CCGG	2 cut(s)	72, 86
MvnI	CGCG	2 cut(s)	7, 177
MwoI	GCNNNNNNNGC	2 cut(s)	209, 261
NdeII	GATC	2 cut(s)	289, 324
NlaIII	CATG	1 cut(s)	476
NlaIV	GGNNCC	3 cut(s)	162, 363, 510
NspV	TTCGAA	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	266
PauI	GCGCGC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 105, 264
PfeI	GAWTC	3 cut(s)	82, 433, 487
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	19, 202, 254, 559
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PspN4I	GGNNCC	3 cut(s)	162, 363, 510
PsyI	GACNNNGTC	1 cut(s)	101
PteI	GCGCGC	1 cut(s)	5
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	477
SatI	GCNGC	4 cut(s)	18, 201, 253, 558
Sau3AI	GATC	2 cut(s)	289, 324
SchI	GAGTC	1 cut(s)	245
SetI	ASST	6 cut(s)	15, 102, 122, 282, 336, 355
SfaNI	GCATC	1 cut(s)	188
Sfr274I	CTCGAG	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	169, 458, 545
SsiI	CCGC	5 cut(s)	18, 43, 56, 201, 252
SspMI	CTAG	2 cut(s)	281, 399
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	4 cut(s)	24, 152, 267, 275
TasI	AATT	3 cut(s)	169, 458, 545
TauI	GCSGC	3 cut(s)	20, 203, 255
TfiI	GAWTC	3 cut(s)	82, 433, 487
TseI	GCWGC	1 cut(s)	557
Tth111I	GACNNNGTC	1 cut(s)	101
XapI	RAATTY	1 cut(s)	545
XhoI	CTCGAG	1 cut(s)	266
XspI	CTAG	2 cut(s)	281, 399
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.