Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002073.1

Orthogroup ID

OG0018222

Physical Location & Seq

Genomic Coordinates Reverse (-)

88021 .. 88762

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgaagaacggtgccgttttgtcgcctactaacggtggttccattgtacgtaggcctggcaacgtgcggatccaacaccgatttcttctccgaccccctcgactcccaccccctctggttcaagcccgcactcttcctctccccggacttccactccgaggcctacatctccgacctccgaaccttcttccccttcgacaccctccgatccgagctccagtcctatctcgcctccctcaaccacgacctcatcaaccgcgactacgccgcttcatcaacctcagcaccaagctcgtcgacgtcgactttgccgtggtgcacatgcgggccccgctcctggagctcaaggaaaagatcgagcagttcagaggctccgtgcagggctcgcttgtggcgttgaccaatggattgaagcagagatccgaggtcgccgagggtagggagatggaggctgctcgaagaaaagagagatggaggctgctcttggttgccgaaagagaggaaaataagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016192 GO:0017119 GO:0031984 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0048193 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0071840 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG2 DUF3510

Protein Analysis

171

Amino Acids

19.51

Weight (kDa)

11.9

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018222)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005879
rosa_multiflora	Rmu_sc0002073.1_g000021 Rmu_sc0002407.1_g000012 Rmu_sc0009827.1_g000006 Rmu_sc0036508.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022180
rosa_samantha	Rh2BG395400 Rh2DG373500 Rh4CG071600 Rh6AG235100 Rh7DG176300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	11
AccBSI	CCGCTC	1 cut(s)	334
AccI	GTMKAC	2 cut(s)	297, 303
AccII	CGCG	1 cut(s)	259
AciI	CCGC	6 cut(s)	67, 127, 257, 268, 325, 332
AclWI	GGATC	4 cut(s)	64, 77, 202, 414
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	5 cut(s)	32, 143, 158, 337, 438
AgsI	TTSAA	2 cut(s)	122, 412
AjnI	CCWGG	2 cut(s)	55, 336
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	3 cut(s)	215, 292, 343
AluI	AGCT	3 cut(s)	215, 292, 343
Alw21I	GWGCWC	3 cut(s)	217, 321, 345
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	4 cut(s)	64, 77, 202, 414
AoxI	GGCC	3 cut(s)	53, 160, 327
ApaI	GGGCCC	1 cut(s)	331
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	452, 478
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AspS9I	GGNCC	2 cut(s)	327, 328
AsuC2I	CCSGG	1 cut(s)	144
BaeGI	GKGCMC	2 cut(s)	321, 331
BamHI	GGATCC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	11
BanII	GRGCYC	4 cut(s)	217, 331, 345, 386
Bbv12I	GWGCWC	3 cut(s)	217, 321, 345
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	439, 465
BccI	CCATC	2 cut(s)	439, 465
BceAI	ACGGC	1 cut(s)	296
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciT130I	CCWGG	2 cut(s)	57, 338
BcnI	CCSGG	1 cut(s)	144
BisI	GCNGC	3 cut(s)	268, 453, 479
BlsI	GCNGC	3 cut(s)	269, 454, 480
Bme1390I	CCNGG	3 cut(s)	57, 144, 338
BmgT120I	GGNCC	2 cut(s)	327, 328
BmiI	GGNNCC	6 cut(s)	13, 40, 71, 329, 330, 373
BmrFI	CCNGG	3 cut(s)	57, 144, 338
BpmI	CTGGAG	2 cut(s)	201, 359
Bpu10I	CCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	5 cut(s)	142, 157, 312, 423, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 143, 158, 337, 438
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	57, 338
BseDI	CCNNGG	5 cut(s)	142, 157, 312, 423, 432
BseLI	CCNNNNNNNGG	5 cut(s)	32, 143, 158, 337, 438
BseMII	CTCAG	1 cut(s)	295
BseNI	ACTGG	1 cut(s)	218
BseSI	GKGCMC	2 cut(s)	321, 331
BseXI	GCAGC	2 cut(s)	439, 465
BsgI	GTGCAG	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	259
BshFI	GGCC	3 cut(s)	55, 162, 329
BshNI	GGYRCC	1 cut(s)	11
BsiHKAI	GWGCWC	3 cut(s)	217, 321, 345
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	5 cut(s)	32, 143, 158, 337, 438
BsnI	GGCC	3 cut(s)	55, 162, 329
Bsp120I	GGGCCC	1 cut(s)	327
Bsp1286I	GDGCHC	5 cut(s)	217, 321, 331, 345, 386
Bsp143I	GATC	4 cut(s)	69, 207, 354, 419
BspACI	CCGC	6 cut(s)	67, 127, 257, 268, 325, 332
BspANI	GGCC	3 cut(s)	55, 162, 329
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	259
BspLI	GGNNCC	6 cut(s)	13, 40, 71, 329, 330, 373
BspPI	GGATC	4 cut(s)	64, 77, 202, 414
BspT107I	GGYRCC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	5 cut(s)	142, 157, 312, 423, 432
BssMI	GATC	4 cut(s)	69, 207, 354, 419
BssNI	GRCGYC	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	57, 338
Bst4CI	ACNGT	2 cut(s)	11, 35
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	127, 327, 386
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	312
BstFNI	CGCG	1 cut(s)	259
BstKTI	GATC	4 cut(s)	72, 210, 357, 422
BstMBI	GATC	4 cut(s)	69, 207, 354, 419
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 340, 385
BstNI	CCWGG	2 cut(s)	57, 338
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	3 cut(s)	55, 142, 336
BstSLI	GKGCMC	2 cut(s)	321, 331
BstSNI	TACGTA	1 cut(s)	50
BstUI	CGCG	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	439, 465
BstX2I	RGATCY	2 cut(s)	69, 419
BstYI	RGATCY	2 cut(s)	69, 419
BsuRI	GGCC	3 cut(s)	55, 162, 329
BtgI	CCRYGG	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	127, 327, 386
Cfr13I	GGNCC	2 cut(s)	327, 328
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	1 cut(s)	322
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	4 cut(s)	71, 209, 356, 421
DpnII	GATC	4 cut(s)	69, 207, 354, 419
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	2 cut(s)	215, 343
Eco105I	TACGTA	1 cut(s)	50
Eco147I	AGGCCT	2 cut(s)	55, 162
Eco24I	GRGCYC	4 cut(s)	217, 331, 345, 386
Eco53kI	GAGCTC	2 cut(s)	215, 343
EcoICRI	GAGCTC	2 cut(s)	215, 343
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	55, 336
EcoT38I	GRGCYC	4 cut(s)	217, 331, 345, 386
FaeI	CATG	1 cut(s)	325
FaiI	YATR	1 cut(s)	323
FatI	CATG	1 cut(s)	321
FauI	CCCGC	3 cut(s)	134, 318, 339
FblI	GTMKAC	2 cut(s)	297, 303
Fnu4HI	GCNGC	3 cut(s)	268, 453, 479
FriOI	GRGCYC	4 cut(s)	217, 331, 345, 386
Fsp4HI	GCNGC	3 cut(s)	268, 453, 479
GluI	GCNGC	3 cut(s)	268, 453, 479
GsuI	CTGGAG	2 cut(s)	201, 359
HaeIII	GGCC	3 cut(s)	55, 162, 329
HapII	CCGG	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	325
HincII	GTYRAC	3 cut(s)	298, 304, 399
HindII	GTYRAC	3 cut(s)	298, 304, 399
HinfI	GANTC	1 cut(s)	102
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	4 cut(s)	298, 304, 319, 399
Hpy188I	TCNGA	8 cut(s)	92, 158, 173, 180, 207, 212, 368, 424
Hpy8I	GTNNAC	4 cut(s)	298, 304, 319, 399
Hpy99I	CGWCG	3 cut(s)	299, 302, 305
HpyAV	CCTTC	2 cut(s)	194, 203
HpyCH4III	ACNGT	2 cut(s)	11, 35
HpyCH4IV	ACGT	3 cut(s)	49, 63, 300
HpyCH4V	TGCA	2 cut(s)	319, 379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 340, 385
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	3 cut(s)	49, 63, 300
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	69, 207, 354, 419
LmnI	GCTCC	4 cut(s)	220, 339, 340, 377
LpnPI	CCDG	8 cut(s)	42, 69, 101, 157, 231, 323, 350, 365
Lsp1109I	GCAGC	2 cut(s)	439, 465
MaeII	ACGT	3 cut(s)	49, 63, 300
MalI	GATC	4 cut(s)	71, 209, 356, 421
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	4 cut(s)	69, 207, 354, 419
MboII	GAAGA	5 cut(s)	16, 77, 125, 179, 471
MflI	RGATCY	2 cut(s)	69, 419
MhlI	GDGCHC	5 cut(s)	217, 321, 331, 345, 386
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	3 cut(s)	97, 115, 196
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	3 cut(s)	57, 144, 338
MvaI	CCWGG	2 cut(s)	57, 338
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	3 cut(s)	331, 340, 385
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	4 cut(s)	69, 207, 354, 419
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	6 cut(s)	13, 40, 71, 329, 330, 373
NmeAIII	GCCGAG	1 cut(s)	457
NspI	RCATGY	1 cut(s)	325
PceI	AGGCCT	2 cut(s)	55, 162
PcsI	WCGNNNNNNNCGW	3 cut(s)	300, 309, 392
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	3 cut(s)	269, 454, 480
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Ppu21I	YACGTR	1 cut(s)	50
Psp124BI	GAGCTC	2 cut(s)	217, 345
Psp6I	CCWGG	2 cut(s)	55, 336
PspGI	CCWGG	2 cut(s)	55, 336
PspN4I	GGNNCC	6 cut(s)	13, 40, 71, 329, 330, 373
PspOMI	GGGCCC	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	327, 328
PsuI	RGATCY	2 cut(s)	69, 419
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SacI	GAGCTC	2 cut(s)	217, 345
SalI	GTCGAC	2 cut(s)	296, 302
SatI	GCNGC	3 cut(s)	268, 453, 479
Sau3AI	GATC	4 cut(s)	69, 207, 354, 419
Sau96I	GGNCC	2 cut(s)	327, 328
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	3 cut(s)	57, 144, 338
SduI	GDGCHC	5 cut(s)	217, 321, 331, 345, 386
SgrDI	CGTCGACG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SnaBI	TACGTA	1 cut(s)	50
SseBI	AGGCCT	2 cut(s)	55, 162
SsiI	CCGC	6 cut(s)	67, 127, 257, 268, 325, 332
SstI	GAGCTC	2 cut(s)	217, 345
StuI	AGGCCT	2 cut(s)	55, 162
StyD4I	CCNGG	3 cut(s)	55, 142, 336
TaaI	ACNGT	2 cut(s)	11, 35
TaiI	ACGT	3 cut(s)	52, 66, 303
TaqI	TCGA	6 cut(s)	100, 196, 297, 303, 357, 457
TauI	GCSGC	1 cut(s)	270
TseI	GCWGC	2 cut(s)	452, 478
TspDTI	ATGAA	2 cut(s)	17, 262
TspGWI	ACGGA	1 cut(s)	364
VneI	GTGCAC	1 cut(s)	317
XceI	RCATGY	1 cut(s)	325
XmiI	GTMKAC	2 cut(s)	297, 303
ZraI	GACGTC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.