Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002105.1

Orthogroup ID

OG0005384

Physical Location & Seq

Genomic Coordinates Forward (+)

129666 .. 134551

Gene Structure 4886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ctgctactgcttcttcgcctttgtctctcactctatagatacgtctcggtgcagcaataccaaactgggcttgagttcagactcagccatactcatatgtggcaactagaatgccataagatgatctatccatcaaaactcatacatgcctcaaagccttttgtcccccctgtgcactctattcctctcaccaggactaatgttacagaggaaatttccatagaaggttgcaacttgagcttctcagttgcaacaaagcaaggtaaaaccatacccattcttaaagattgctcgcttcgcattccgtcagggcagttctggatgcttcttggccccaatggttgtgggaaatctaccctcctaaagattttggctggtcttttgaatccaacaattggaactgtgtacgtgaagaggcctaggagtttcgtttttcaaaacccagaccatcaggtagtaatgcctacagttgaagcagatgtggcatttggtcttggtaagttcaacttgacacgtgatgaagtcaaatctagagtgtcaaaagctgcaaatgctgttagcatgtcaaagtacctgcagaggtcagttcagactcttagtggtggccagaagcaaagggttgccattgccggtgctttagctgaagcatgcaaagttttgttattggatgagctgacaacatttttggatgaaagtgatcaggttggggtgatcaaagctgtgaggaattccttggatagttctggggaagttaccgcattatgggtcactcatcgcctggaagaacttgagtatgcagatggtgctgtttatatggaaaatgggagagttgtgatgcatggcgatgcagcaagcattatggattttattaaaaccaggcaatcagcatatatcaaggaaatcaattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

303

Amino Acids

33.63

Weight (kDa)

8.95

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	94 - 226	7.6e-28	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33460
fragaria_vesca	FvH4_5g28750 FvH4_5g28750 FvH4_5g28750 FvH4_5g28750
malus_domestica	MD10G1016500.v1.1
prunus_persica	Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1 Prupe.8G020300_v2.0.a1
pyrus_communis	pycom10g01080
rosa_chinensis	RchiOBHm_Chr7g0220961
rosa_laevigata	RLG00000002191
rosa_multiflora	Rmu_sc0002105.1_g000026
rosa_roxburghii	Rroxscaffold_3G00238850
rosa_rugosa	Rorug07G0198400 Rorug07G0198500 Rorug07G0198600
rosa_samantha	Rh7AG338800 Rh7BG329600 Rh7CG356900 Rh7DG337600
rosa_wichuraiana	Rw7G028820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	582
AccB7I	CCANNNNNTGG	1 cut(s)	395
AciI	CCGC	1 cut(s)	756
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	2 cut(s)	213, 727
AcuI	CTGAAG	1 cut(s)	663
AcvI	CACGTG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	407, 572
AfiI	CCNNNNNNNGG	2 cut(s)	395, 762
AflIII	ACRYGT	1 cut(s)	512
AgsI	TTSAA	4 cut(s)	385, 437, 473, 505
AjnI	CCWGG	3 cut(s)	191, 777, 875
AluBI	AGCT	5 cut(s)	240, 545, 641, 673, 719
AluI	AGCT	5 cut(s)	240, 545, 641, 673, 719
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	29, 49
Alw44I	GTGCAC	1 cut(s)	173
AoxI	GGCC	3 cut(s)	331, 416, 604
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	52, 545, 848
ApoI	RAATTY	2 cut(s)	213, 727
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AspA2I	CCTAGG	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	181, 721
AvrII	CCTAGG	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	606
BbrPI	CACGTG	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	64, 532, 860
BccI	CCATC	3 cut(s)	139, 456, 794
BciT130I	CCWGG	3 cut(s)	193, 779, 877
BclI	TGATCA	2 cut(s)	697, 711
BcoDI	GTCTC	2 cut(s)	29, 49
BfaI	CTAG	3 cut(s)	107, 420, 531
BfmI	CTRYAG	3 cut(s)	34, 465, 575
BfuAI	ACCTGC	1 cut(s)	582
BisI	GCNGC	3 cut(s)	53, 546, 849
BlnI	CCTAGG	1 cut(s)	419
BlsI	GCNGC	3 cut(s)	54, 547, 850
Bme1390I	CCNGG	3 cut(s)	193, 779, 877
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	3 cut(s)	193, 779, 877
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	312, 825, 835
BmuI	ACTGGG	1 cut(s)	75
BpuEI	CTTGAG	3 cut(s)	92, 256, 809
BsaAI	YACGTR	2 cut(s)	409, 515
BsaJI	CCNNGG	2 cut(s)	419, 732
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 762
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	624
BseBI	CCWGG	3 cut(s)	193, 779, 877
BseDI	CCNNGG	2 cut(s)	419, 732
BseGI	GGATG	3 cut(s)	327, 673, 694
BseLI	CCNNNNNNNGG	2 cut(s)	395, 762
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	2 cut(s)	97, 258
BseNI	ACTGG	1 cut(s)	70
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	64, 532, 860
BsgI	GTGCAG	1 cut(s)	71
BshFI	GGCC	3 cut(s)	333, 418, 606
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	630
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	395, 762
BsmAI	GTCTC	2 cut(s)	29, 49
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	2 cut(s)	116, 300
BsnI	GGCC	3 cut(s)	333, 418, 606
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	123, 697, 711
BspACI	CCGC	1 cut(s)	756
BspANI	GGCC	3 cut(s)	333, 418, 606
BspCNI	CTCAG	2 cut(s)	96, 257
BspLI	GGNNCC	1 cut(s)	334
BspMAI	CTGCAG	1 cut(s)	579
BspMI	ACCTGC	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	2 cut(s)	419, 732
BssMI	GATC	3 cut(s)	123, 697, 711
BssT1I	CCWWGG	2 cut(s)	419, 732
Bst2UI	CCWGG	3 cut(s)	193, 779, 877
Bst4CI	ACNGT	2 cut(s)	403, 469
Bst6I	CTCTTC	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstBAI	YACGTR	2 cut(s)	409, 515
BstC8I	GCNNGC	3 cut(s)	293, 649, 853
BstDEI	CTNAG	3 cut(s)	83, 244, 596
BstF5I	GGATG	3 cut(s)	327, 673, 694
BstKTI	GATC	3 cut(s)	126, 700, 714
BstMAI	GTCTC	2 cut(s)	29, 49
BstMBI	GATC	3 cut(s)	123, 697, 711
BstMWI	GCNNNNNNNGC	5 cut(s)	237, 297, 482, 551, 803
BstNI	CCWGG	3 cut(s)	193, 779, 877
BstNSI	RCATGY	3 cut(s)	149, 565, 651
BstSCI	CCNGG	3 cut(s)	191, 777, 875
BstSFI	CTRYAG	3 cut(s)	34, 465, 575
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	64, 532, 860
BsuRI	GGCC	3 cut(s)	333, 418, 606
BtgZI	GCGATG	2 cut(s)	758, 858
BtsCI	GGATG	3 cut(s)	327, 673, 694
BveI	ACCTGC	1 cut(s)	582
Cac8I	GCNNGC	3 cut(s)	293, 649, 853
Cfr10I	RCCGGY	1 cut(s)	629
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	406, 571
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	4 cut(s)	146, 562, 648, 839
CviQI	GTAC	2 cut(s)	406, 571
DdeI	CTNAG	3 cut(s)	83, 244, 596
DpnI	GATC	3 cut(s)	125, 699, 713
DpnII	GATC	3 cut(s)	123, 697, 711
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco130I	CCWWGG	2 cut(s)	419, 732
Eco147I	AGGCCT	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	663
Eco72I	CACGTG	1 cut(s)	515
EcoRI	GAATTC	1 cut(s)	727
EcoRII	CCWGG	3 cut(s)	191, 777, 875
EcoT14I	CCWWGG	2 cut(s)	419, 732
EcoT22I	ATGCAT	1 cut(s)	840
ErhI	CCWWGG	2 cut(s)	419, 732
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	4 cut(s)	149, 565, 651, 842
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	4 cut(s)	145, 561, 647, 838
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	697, 711
Fnu4HI	GCNGC	3 cut(s)	53, 546, 849
FokI	GGATG	3 cut(s)	334, 680, 701
Fsp4HI	GCNGC	3 cut(s)	53, 546, 849
FspBI	CTAG	3 cut(s)	107, 420, 531
GluI	GCNGC	3 cut(s)	53, 546, 849
HaeIII	GGCC	3 cut(s)	333, 418, 606
HapII	CCGG	1 cut(s)	630
Hin1II	CATG	4 cut(s)	149, 565, 651, 842
HinfI	GANTC	3 cut(s)	81, 385, 592
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	2 cut(s)	181, 721
Hpy166II	GTNNAC	2 cut(s)	175, 406
Hpy188I	TCNGA	2 cut(s)	80, 591
Hpy188III	TCNNGA	3 cut(s)	319, 531, 909
Hpy8I	GTNNAC	2 cut(s)	175, 406
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	403, 469
HpyCH4IV	ACGT	3 cut(s)	42, 408, 514
HpyF10VI	GCNNNNNNNGC	5 cut(s)	237, 297, 482, 551, 803
HpyF3I	CTNAG	3 cut(s)	83, 244, 596
HpySE526I	ACGT	3 cut(s)	42, 408, 514
Hsp92II	CATG	4 cut(s)	149, 565, 651, 842
Ksp22I	TGATCA	2 cut(s)	697, 711
Kzo9I	GATC	3 cut(s)	123, 697, 711
Lsp1109I	GCAGC	3 cut(s)	64, 532, 860
LweI	GCATC	3 cut(s)	312, 825, 835
MaeI	CTAG	3 cut(s)	107, 420, 531
MaeII	ACGT	3 cut(s)	42, 408, 514
MaeIII	GTNAC	3 cut(s)	202, 751, 766
MalI	GATC	3 cut(s)	125, 699, 713
MboI	GATC	3 cut(s)	123, 697, 711
MboII	GAAGA	3 cut(s)	5, 424, 794
MfeI	CAATTG	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	4 cut(s)	213, 393, 727, 904
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	2 cut(s)	75, 586
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	7 cut(s)	160, 195, 202, 368, 408, 573, 717
Mox20I	TGGCCA	1 cut(s)	606
Mph1103I	ATGCAT	1 cut(s)	840
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	2 cut(s)	282, 870
MslI	CAYNNNNRTG	1 cut(s)	843
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	3 cut(s)	193, 779, 877
MunI	CAATTG	1 cut(s)	393
Mva1269I	GAATGC	2 cut(s)	116, 300
MvaI	CCWGG	3 cut(s)	193, 779, 877
MwoI	GCNNNNNNNGC	5 cut(s)	237, 297, 482, 551, 803
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	3 cut(s)	123, 697, 711
NlaIII	CATG	4 cut(s)	149, 565, 651, 842
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	766
NsiI	ATGCAT	1 cut(s)	840
NspI	RCATGY	3 cut(s)	149, 565, 651
PaeI	GCATGC	1 cut(s)	651
PceI	AGGCCT	1 cut(s)	418
PctI	GAATGC	2 cut(s)	116, 300
PfeI	GAWTC	1 cut(s)	385
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	3 cut(s)	54, 547, 850
PleI	GAGTC	2 cut(s)	75, 586
PmaCI	CACGTG	1 cut(s)	515
PmlI	CACGTG	1 cut(s)	515
PpsI	GAGTC	2 cut(s)	75, 586
Ppu21I	YACGTR	2 cut(s)	409, 515
Psp6I	CCWGG	3 cut(s)	191, 777, 875
PspCI	CACGTG	1 cut(s)	515
PspGI	CCWGG	3 cut(s)	191, 777, 875
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	579
RsaI	GTAC	2 cut(s)	407, 572
RsaNI	GTAC	2 cut(s)	406, 571
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	2 cut(s)	282, 870
SatI	GCNGC	3 cut(s)	53, 546, 849
Sau3AI	GATC	3 cut(s)	123, 697, 711
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	2 cut(s)	75, 586
ScrFI	CCNGG	3 cut(s)	193, 779, 877
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	3 cut(s)	312, 825, 835
SfcI	CTRYAG	3 cut(s)	34, 465, 575
SmiMI	CAYNNNNRTG	1 cut(s)	843
SmlI	CTYRAG	3 cut(s)	71, 235, 788
SmoI	CTYRAG	3 cut(s)	71, 235, 788
SphI	GCATGC	1 cut(s)	651
Sse9I	AATT	4 cut(s)	213, 393, 727, 904
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	1 cut(s)	756
SspMI	CTAG	3 cut(s)	107, 420, 531
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	3 cut(s)	191, 777, 875
StyI	CCWWGG	2 cut(s)	419, 732
TaaI	ACNGT	2 cut(s)	403, 469
TaiI	ACGT	3 cut(s)	45, 411, 517
TasI	AATT	4 cut(s)	213, 393, 727, 904
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	2 cut(s)	282, 870
Tru9I	TTAA	2 cut(s)	282, 870
TseFI	GTSAC	1 cut(s)	766
TseI	GCWGC	3 cut(s)	52, 545, 848
Tsp45I	GTSAC	1 cut(s)	766
TspDTI	ATGAA	2 cut(s)	534, 705
TspGWI	ACGGA	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	395
VneI	GTGCAC	1 cut(s)	173
XapI	RAATTY	2 cut(s)	213, 727
XbaI	TCTAGA	1 cut(s)	530
XceI	RCATGY	3 cut(s)	149, 565, 651
XmaJI	CCTAGG	1 cut(s)	419
XspI	CTAG	3 cut(s)	107, 420, 531
Zsp2I	ATGCAT	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.