Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002126.1

Orthogroup ID

OG0012330

Physical Location & Seq

Genomic Coordinates Forward (+)

14220 .. 16771

Gene Structure 2552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002126.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgtcagattcgccggagggcgaaaccgtcaccgccgccgccgccgcgagtcccgtggccgagtcggatctccggcggaggccgatcgcgagaggcgaggtggaggattcggaatccaaggacggcaatttggtggcggaggagacctccagtgaggactcggtgttggggaagatcaccggggatgagaataaggtgaagaatgaagcttctgtggagtcggttcatcgcggcggggaggatcgaggcggttccggttccggttccggtgcgaaattcgcttaccggccttctgaaattccggctcaccggagaattaaggagagtccgcttagctccgatgccattttcagacagagccatgcaggtctcttcaacctttgtatagtagtacttgttgctgtaaacagcaggctcatcatcgagaatttaatgaagtatggttggttgattaaaaccggtttttggtttagttcaagatcattgcgagattggccccttcttatgtgttgccttactcttcctattttcccacttgccgcctttctagtcgagaagttagcactacaaaagcgtataaacgaatctgctgttatttctcttcatattgccattactacaacttcactattgtatccggttctcgtaattctcagatgtgactctgctgctttatctggcgttacattgatgctctttgcttgcattgtgtggttaaaactcgtctcctatgtgcatacaaattatgatatgagaaagggtaccatatcagttggtaaggtggatgttgtgcctggttctccaagtgttgattgctctcatgaacttagcttgaaaagtttgacatacttcatggttgctccaacgttatgttaccagactagttaccctcgtaccccatgtgttcgaaagagttgggtatgccgtcaatttgtcaagttgatcatttttactggagtgatgggatttatgatagaacaatacatcaatcctattatcaagaattcacaacatcctttgaaggggaaccttttatatgcaatagagagggttttaaagctttctcttccatgtttatatgtgtggctatgcatgttctattgctttttccacctctggttaaatattctcgctgagctgctgtgttttggggatcgagagttctataaagattggtggaatgcaaaaacagttgaggaggtaggttttatgttctatgaagtgcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0005975 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010154 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0022414 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0033993 GO:0034284 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0045995 GO:0046460 GO:0046463 GO:0046486 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0071704 GO:0097305 GO:0098827 GO:1900140 GO:1901576 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00561 ko00830 ko01100 ko04975 map00561 map00830 map01100 map04975

Pfam Domains

Protein Families

MBOAT

Protein Analysis

409

Amino Acids

45.84

Weight (kDa)

7.51

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19450
fragaria_vesca	FvH4_1g07910
malus_domestica	MD02G1082600.v1.1 MD15G1210700.v1.1
prunus_persica	Prupe.7G206100_v2.0.a1
pyrus_communis	pycom02g06550 pycom15g18660
rosa_chinensis	RchiOBHm_Chr2g0093781
rosa_laevigata	RLG00000016436
rosa_multiflora	Rmu_sc0002126.1_g000005 Rmu_sc0012116.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147810
rosa_rugosa	Rorug02G0039700 Rorug02G0039800 Rorug02G0039900 Rorug02G0040000
rosa_samantha	Rh2AG086200 Rh2BG086500 Rh2DG084600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
Acc65I	GGTACC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	761
AccII	CGCG	3 cut(s)	47, 89, 231
AclI	AACGTT	1 cut(s)	866
AclWI	GGATC	3 cut(s)	75, 249, 1161
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	4 cut(s)	275, 297, 427, 1003
AfaI	GTAC	3 cut(s)	393, 763, 895
AfiI	CCNNNNNNNGG	2 cut(s)	465, 1022
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	4 cut(s)	376, 477, 835, 1021
AhlI	ACTAGT	1 cut(s)	881
AjnI	CCWGG	1 cut(s)	793
AloI	GAACNNNNNNTCC	2 cut(s)	1145, 1177
AluBI	AGCT	5 cut(s)	209, 336, 831, 1060, 1138
AluI	AGCT	5 cut(s)	209, 336, 831, 1060, 1138
Alw26I	GTCTC	3 cut(s)	137, 374, 730
AlwI	GGATC	3 cut(s)	75, 249, 1161
AoxI	GGCC	4 cut(s)	57, 80, 287, 494
ApeKI	GCWGC	2 cut(s)	668, 1138
ApoI	RAATTY	4 cut(s)	275, 297, 427, 1003
AsiGI	ACCGGT	1 cut(s)	458
Asp718I	GGTACC	1 cut(s)	761
AspS9I	GGNCC	1 cut(s)	495
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	4 cut(s)	22, 169, 208, 299
AsuII	TTCGAA	1 cut(s)	907
BaeI	ACNNNNGTAYC	4 cut(s)	617, 650, 877, 910
BanI	GGYRCC	1 cut(s)	761
BbvI	GCAGC	2 cut(s)	655, 1125
BccI	CCATC	1 cut(s)	955
BceAI	ACGGC	2 cut(s)	139, 909
BciT130I	CCWGG	1 cut(s)	795
BciVI	GTATCC	1 cut(s)	645
BclI	TGATCA	1 cut(s)	942
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	3 cut(s)	137, 374, 730
BcuI	ACTAGT	1 cut(s)	881
BfaI	CTAG	2 cut(s)	548, 882
BfuAI	ACCTGC	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	645
BisI	GCNGC	8 cut(s)	36, 39, 42, 45, 232, 540, 669, 1139
BlpI	GCTNAGC	2 cut(s)	332, 1134
BlsI	GCNGC	8 cut(s)	37, 40, 43, 46, 233, 541, 670, 1140
BmcAI	AGTACT	1 cut(s)	393
Bme1390I	CCNGG	2 cut(s)	181, 795
BmgT120I	GGNCC	1 cut(s)	495
BmiI	GGNNCC	6 cut(s)	253, 259, 265, 497, 763, 1028
BmrFI	CCNGG	2 cut(s)	181, 795
BmsI	GCATC	2 cut(s)	331, 681
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BpmI	CTGGAG	2 cut(s)	133, 975
Bpu1102I	GCTNAGC	2 cut(s)	332, 1134
Bpu14I	TTCGAA	1 cut(s)	907
BpuMI	CCSGG	1 cut(s)	181
BsaI	GGTCTC	2 cut(s)	137, 374
BsaJI	CCNNGG	3 cut(s)	54, 117, 180
BsaWI	WCCGGW	6 cut(s)	254, 260, 266, 309, 458, 637
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 1022
Bse118I	RCCGGY	2 cut(s)	285, 458
Bse1I	ACTGG	2 cut(s)	150, 958
Bse3DI	GCAATG	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	795
BseDI	CCNNGG	3 cut(s)	54, 117, 180
BseGI	GGATG	3 cut(s)	190, 790, 1012
BseLI	CCNNNNNNNGG	2 cut(s)	465, 1022
BseMI	GCAATG	1 cut(s)	482
BseMII	CTCAG	2 cut(s)	667, 1125
BseNI	ACTGG	2 cut(s)	150, 958
BseRI	GAGGAG	2 cut(s)	155, 1211
BseXI	GCAGC	2 cut(s)	655, 1125
Bsh1236I	CGCG	3 cut(s)	47, 89, 231
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	4 cut(s)	59, 82, 289, 496
BshNI	GGYRCC	1 cut(s)	761
BshTI	ACCGGT	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	465, 1022
BsmAI	GTCTC	3 cut(s)	137, 374, 730
BsmBI	CGTCTC	1 cut(s)	730
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	1186
BsnI	GGCC	4 cut(s)	59, 82, 289, 496
Bso31I	GGTCTC	2 cut(s)	137, 374
Bsp119I	TTCGAA	1 cut(s)	907
Bsp143I	GATC	7 cut(s)	67, 84, 174, 241, 479, 942, 1153
Bsp1720I	GCTNAGC	2 cut(s)	332, 1134
Bsp68I	TCGCGA	1 cut(s)	89
BspANI	GGCC	4 cut(s)	59, 82, 289, 496
BspCNI	CTCAG	2 cut(s)	666, 1126
BspFNI	CGCG	3 cut(s)	47, 89, 231
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	6 cut(s)	253, 259, 265, 497, 763, 1028
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	3 cut(s)	75, 249, 1161
BspT104I	TTCGAA	1 cut(s)	907
BspT107I	GGYRCC	1 cut(s)	761
BspTNI	GGTCTC	2 cut(s)	137, 374
BsrDI	GCAATG	1 cut(s)	482
BsrFI	RCCGGY	2 cut(s)	285, 458
BsrI	ACTGG	2 cut(s)	150, 958
BssAI	RCCGGY	2 cut(s)	285, 458
BssECI	CCNNGG	3 cut(s)	54, 117, 180
BssMI	GATC	7 cut(s)	67, 84, 174, 241, 479, 942, 1153
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	795
Bst4CI	ACNGT	2 cut(s)	28, 1192
Bst6I	CTCTTC	4 cut(s)	377, 525, 606, 1071
BstBI	TTCGAA	1 cut(s)	907
BstC8I	GCNNGC	2 cut(s)	413, 703
BstDEI	CTNAG	4 cut(s)	332, 653, 827, 1134
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	3 cut(s)	190, 790, 1012
BstFNI	CGCG	3 cut(s)	47, 89, 231
BstKTI	GATC	7 cut(s)	70, 87, 177, 244, 482, 945, 1156
BstMAI	GTCTC	3 cut(s)	137, 374, 730
BstMBI	GATC	7 cut(s)	67, 84, 174, 241, 479, 942, 1153
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 44, 278, 493
BstNI	CCWGG	1 cut(s)	795
BstNSI	RCATGY	1 cut(s)	1096
BstSCI	CCNGG	2 cut(s)	179, 793
BstUI	CGCG	3 cut(s)	47, 89, 231
BstV1I	GCAGC	2 cut(s)	655, 1125
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	4 cut(s)	59, 82, 289, 496
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	190, 790, 1012
BtsIMutI	CAGTG	1 cut(s)	157
BtuMI	TCGCGA	1 cut(s)	89
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	413, 703
CciI	TCATGA	1 cut(s)	820
Cfr10I	RCCGGY	2 cut(s)	285, 458
Cfr13I	GGNCC	1 cut(s)	495
Csp6I	GTAC	3 cut(s)	392, 762, 894
CspAI	ACCGGT	1 cut(s)	458
CviAII	CATG	6 cut(s)	362, 821, 853, 900, 1071, 1093
CviQI	GTAC	3 cut(s)	392, 762, 894
DdeI	CTNAG	4 cut(s)	332, 653, 827, 1134
DpnI	GATC	7 cut(s)	69, 86, 176, 243, 481, 944, 1155
DpnII	GATC	7 cut(s)	67, 84, 174, 241, 479, 942, 1153
DraI	TTTAAA	1 cut(s)	1056
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	4 cut(s)	377, 525, 606, 1071
EarI	CTCTTC	4 cut(s)	377, 525, 606, 1071
EciI	GGCGGA	2 cut(s)	91, 152
Eco130I	CCWWGG	1 cut(s)	117
Eco31I	GGTCTC	2 cut(s)	137, 374
EcoRI	GAATTC	1 cut(s)	1003
EcoRII	CCWGG	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	1094
ErhI	CCWWGG	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	730
FaeI	CATG	6 cut(s)	365, 824, 856, 903, 1074, 1096
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	6 cut(s)	361, 820, 852, 899, 1070, 1092
FauI	CCCGC	1 cut(s)	227
FbaI	TGATCA	1 cut(s)	942
Fnu4HI	GCNGC	8 cut(s)	36, 39, 42, 45, 232, 540, 669, 1139
FokI	GGATG	3 cut(s)	197, 797, 999
Fsp4HI	GCNGC	8 cut(s)	36, 39, 42, 45, 232, 540, 669, 1139
FspBI	CTAG	2 cut(s)	548, 882
GluI	GCNGC	8 cut(s)	36, 39, 42, 45, 232, 540, 669, 1139
GsuI	CTGGAG	2 cut(s)	133, 975
HaeIII	GGCC	4 cut(s)	59, 82, 289, 496
Hin1II	CATG	6 cut(s)	365, 824, 856, 903, 1074, 1096
HindIII	AAGCTT	2 cut(s)	207, 1058
HphI	GGTGA	4 cut(s)	22, 169, 208, 299
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	7 cut(s)	7, 67, 112, 295, 340, 353, 656
Hpy188III	TCNNGA	7 cut(s)	88, 424, 477, 553, 821, 1000, 1157
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	300, 509, 1015
HpyCH4III	ACNGT	2 cut(s)	28, 1192
HpyCH4IV	ACGT	1 cut(s)	866
HpyCH4V	TGCA	7 cut(s)	365, 705, 736, 1040, 1092, 1184, 1225
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 44, 278, 493
HpyF3I	CTNAG	4 cut(s)	332, 653, 827, 1134
HpySE526I	ACGT	1 cut(s)	866
Hsp92II	CATG	6 cut(s)	365, 824, 856, 903, 1074, 1096
KpnI	GGTACC	1 cut(s)	765
Ksp22I	TGATCA	1 cut(s)	942
Kzo9I	GATC	7 cut(s)	67, 84, 174, 241, 479, 942, 1153
LmnI	GCTCC	2 cut(s)	341, 865
Lsp1109I	GCAGC	2 cut(s)	655, 1125
LweI	GCATC	2 cut(s)	331, 681
MaeI	CTAG	2 cut(s)	548, 882
MaeII	ACGT	1 cut(s)	866
MaeIII	GTNAC	5 cut(s)	28, 659, 682, 872, 884
MalI	GATC	7 cut(s)	69, 86, 176, 243, 481, 944, 1155
MboI	GATC	7 cut(s)	67, 84, 174, 241, 479, 942, 1153
MboII	GAAGA	6 cut(s)	184, 211, 364, 512, 593, 1058
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	9 cut(s)	127, 275, 297, 315, 427, 648, 742, 929, 1003
MlyI	GAGTC	6 cut(s)	58, 71, 152, 227, 334, 656
MmeI	TCCRAC	2 cut(s)	45, 887
Mph1103I	ATGCAT	1 cut(s)	1094
MseI	TTAA	6 cut(s)	318, 431, 453, 716, 1055, 1121
MspR9I	CCNGG	2 cut(s)	181, 795
Mva1269I	GAATGC	1 cut(s)	1186
MvaI	CCWGG	1 cut(s)	795
MvnI	CGCG	3 cut(s)	47, 89, 231
MwoI	GCNNNNNNNGC	4 cut(s)	41, 44, 278, 493
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	7 cut(s)	67, 84, 174, 241, 479, 942, 1153
NlaIII	CATG	6 cut(s)	365, 824, 856, 903, 1074, 1096
NlaIV	GGNNCC	6 cut(s)	253, 259, 265, 497, 763, 1028
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	28, 659
NruI	TCGCGA	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	1094
NspI	RCATGY	1 cut(s)	1096
NspV	TTCGAA	1 cut(s)	907
PagI	TCATGA	1 cut(s)	820
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	1186
PfeI	GAWTC	4 cut(s)	8, 107, 113, 584
PinAI	ACCGGT	1 cut(s)	458
PkrI	GCNGC	8 cut(s)	37, 40, 43, 46, 233, 541, 670, 1140
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	6 cut(s)	57, 70, 152, 226, 333, 656
PpsI	GAGTC	6 cut(s)	57, 70, 152, 226, 333, 656
Psp1406I	AACGTT	1 cut(s)	866
Psp6I	CCWGG	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	793
PspN4I	GGNNCC	6 cut(s)	253, 259, 265, 497, 763, 1028
PspPI	GGNCC	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	67
PvuI	CGATCG	1 cut(s)	87
RruI	TCGCGA	1 cut(s)	89
RsaI	GTAC	3 cut(s)	393, 763, 895
RsaNI	GTAC	3 cut(s)	392, 762, 894
SaqAI	TTAA	6 cut(s)	318, 431, 453, 716, 1055, 1121
SatI	GCNGC	8 cut(s)	36, 39, 42, 45, 232, 540, 669, 1139
Sau3AI	GATC	7 cut(s)	67, 84, 174, 241, 479, 942, 1153
Sau96I	GGNCC	1 cut(s)	495
ScaI	AGTACT	1 cut(s)	393
SchI	GAGTC	6 cut(s)	58, 71, 152, 227, 334, 656
ScrFI	CCNGG	2 cut(s)	181, 795
SfaNI	GCATC	2 cut(s)	331, 681
SfuI	TTCGAA	1 cut(s)	907
SpeI	ACTAGT	1 cut(s)	881
Sse9I	AATT	9 cut(s)	127, 275, 297, 315, 427, 648, 742, 929, 1003
SspI	AATATT	1 cut(s)	1126
SspMI	CTAG	2 cut(s)	548, 882
StyD4I	CCNGG	2 cut(s)	179, 793
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	28, 1192
TaiI	ACGT	1 cut(s)	869
TaqI	TCGA	5 cut(s)	244, 423, 552, 907, 1156
TasI	AATT	9 cut(s)	127, 275, 297, 315, 427, 648, 742, 929, 1003
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	6 cut(s)	38, 41, 44, 47, 234, 542
TfiI	GAWTC	4 cut(s)	8, 107, 113, 584
Tru1I	TTAA	6 cut(s)	318, 431, 453, 716, 1055, 1121
Tru9I	TTAA	6 cut(s)	318, 431, 453, 716, 1055, 1121
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	28, 659
TseI	GCWGC	2 cut(s)	668, 1138
Tsp45I	GTSAC	2 cut(s)	28, 659
TspDTI	ATGAA	6 cut(s)	215, 219, 449, 593, 837, 841
TspRI	CASTG	1 cut(s)	157
XapI	RAATTY	4 cut(s)	275, 297, 427, 1003
XceI	RCATGY	1 cut(s)	1096
XspI	CTAG	2 cut(s)	548, 882
ZrmI	AGTACT	1 cut(s)	393
Zsp2I	ATGCAT	1 cut(s)	1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.