Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012330

Physical Location & Seq

Genomic Coordinates Reverse (-)

3094716 .. 3098985

Gene Structure 4270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0039900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCCTTATGAGAAAGAGGAATTGCTGAATGCTGCTGTTTGTTGTGTGGATGCCTTGGAAGCAGAGTTAATTGCTACTAAAAAGATGCTAAAGCTTTCTGCACCTATTGCTACTGGTCTTATTTTGGTCTCTTGCTGTCCTGGGGGTCAGGCATCAAATGTTGTAACTTATATCTCAAAGGGGAATGTTGCATTATCTGTTTTCATGATGACGTGTTCAACAATAGGAGCTATTATTACCAAGCTGCTTGCTGGCCAGCTTGTTCCAGTTGATGCTGCGGGCCTAGCGCTCAGCACTTTCCAGGTTGTTTTAGTGCCAATGATTATTGGAGTCTTGAAAGCACAAGAAGCGCGATTGATACTCCCGGTGGCTGCTCTACATGCTGCTGCAATGCTGCATTTGCCATTGGCTATTGGATATCAAGGATATCTTTTGGTGAATCCACTTCTCCTCATATCCATAGAGTGTGGGATGCAGAGATTGGCACTTGGGTTTTTACTAGCTCAAAAGCATTTTACAAACCCCTTAGTTGCTGTCCCTTCTGCTGTTAGTGTTGTTTGCAATCTTGCATGGCGGCCTGTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0005975 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010154 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0022414 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0033993 GO:0034284 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0045995 GO:0046460 GO:0046463 GO:0046486 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0071704 GO:0097305 GO:0098827 GO:1900140 GO:1901576 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00561 ko00830 ko01100 ko04975 map00561 map00830 map01100 map04975

Pfam Domains

Protein Families

MBOAT

Protein Analysis

195

Amino Acids

20.4

Weight (kDa)

8.17

Isoelectric Point (pI)

27.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	26 - 114	3.1e-21	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19450
fragaria_vesca	FvH4_1g07910
malus_domestica	MD02G1082600.v1.1 MD15G1210700.v1.1
prunus_persica	Prupe.7G206100_v2.0.a1
pyrus_communis	pycom02g06550 pycom15g18660
rosa_chinensis	RchiOBHm_Chr2g0093781
rosa_laevigata	RLG00000016436
rosa_multiflora	Rmu_sc0002126.1_g000005 Rmu_sc0012116.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147810
rosa_rugosa	Rorug02G0039700 Rorug02G0039800 Rorug02G0039900 Rorug02G0040000
rosa_samantha	Rh2AG086200 Rh2BG086500 Rh2DG084600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	352
AciI	CCGC	2 cut(s)	278, 574
AcoI	YGGCCR	1 cut(s)	253
AfeI	AGCGCT	1 cut(s)	288
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	219, 337
AjiI	CACGTC	1 cut(s)	213
AjnI	CCWGG	2 cut(s)	139, 300
AluBI	AGCT	5 cut(s)	94, 230, 244, 259, 503
AluI	AGCT	5 cut(s)	94, 230, 244, 259, 503
Alw26I	GTCTC	1 cut(s)	133
Aor51HI	AGCGCT	1 cut(s)	288
AoxI	GGCC	3 cut(s)	253, 280, 575
ApeKI	GCWGC	7 cut(s)	32, 244, 275, 371, 383, 386, 394
AspLEI	GCGC	2 cut(s)	289, 352
AspS9I	GGNCC	1 cut(s)	280
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	255
BbvI	GCAGC	7 cut(s)	19, 231, 262, 358, 370, 373, 381
BciT130I	CCWGG	2 cut(s)	141, 302
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	2 cut(s)	284, 500
BfoI	RGCGCY	1 cut(s)	290
BisI	GCNGC	8 cut(s)	33, 245, 276, 372, 384, 387, 395, 575
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	8 cut(s)	34, 246, 277, 373, 385, 388, 396, 576
Bme1390I	CCNGG	3 cut(s)	141, 302, 365
BmgBI	CACGTC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	280
BmrFI	CCNGG	3 cut(s)	141, 302, 365
BmsI	GCATC	5 cut(s)	40, 75, 161, 262, 462
Bpu1102I	GCTNAGC	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	365
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	54, 140
Bse1I	ACTGG	2 cut(s)	118, 266
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	141, 302
BseDI	CCNNGG	2 cut(s)	54, 140
BseGI	GGATG	2 cut(s)	55, 477
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	304
BseNI	ACTGG	2 cut(s)	118, 266
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	7 cut(s)	19, 231, 262, 358, 370, 373, 381
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	3 cut(s)	255, 282, 577
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	255, 282, 577
Bso31I	GGTCTC	1 cut(s)	133
Bsp1720I	GCTNAGC	1 cut(s)	290
BspACI	CCGC	2 cut(s)	278, 574
BspANI	GGCC	3 cut(s)	255, 282, 577
BspCNI	CTCAG	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	352
BspHI	TCATGA	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	118, 266
BssECI	CCNNGG	2 cut(s)	54, 140
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	141, 302
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	4 cut(s)	249, 253, 257, 280
BstDEI	CTNAG	2 cut(s)	290, 526
BstF5I	GGATG	2 cut(s)	55, 477
BstFNI	CGCG	1 cut(s)	352
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	2 cut(s)	289, 352
BstMAI	GTCTC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 107, 284, 347, 380, 400
BstNI	CCWGG	2 cut(s)	141, 302
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	3 cut(s)	139, 300, 363
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	7 cut(s)	19, 231, 262, 358, 370, 373, 381
BsuRI	GGCC	3 cut(s)	255, 282, 577
BtrI	CACGTC	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	55, 477
Cac8I	GCNNGC	4 cut(s)	249, 253, 257, 280
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	2 cut(s)	289, 352
Cfr13I	GGNCC	1 cut(s)	280
CviAII	CATG	3 cut(s)	205, 380, 570
DdeI	CTNAG	2 cut(s)	290, 526
EaeI	YGGCCR	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	133
Eco32I	GATATC	2 cut(s)	419, 428
Eco47III	AGCGCT	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	139, 300
EcoRV	GATATC	2 cut(s)	419, 428
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	3 cut(s)	208, 383, 573
FaiI	YATR	7 cut(s)	9, 171, 206, 381, 455, 461, 571
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	3 cut(s)	204, 379, 569
FauI	CCCGC	1 cut(s)	271
Fnu4HI	GCNGC	8 cut(s)	33, 245, 276, 372, 384, 387, 395, 575
FokI	GGATG	2 cut(s)	62, 484
Fsp4HI	GCNGC	8 cut(s)	33, 245, 276, 372, 384, 387, 395, 575
FspBI	CTAG	2 cut(s)	284, 500
GlaI	GCGC	2 cut(s)	288, 351
GluI	GCNGC	8 cut(s)	33, 245, 276, 372, 384, 387, 395, 575
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	3 cut(s)	255, 282, 577
HapII	CCGG	1 cut(s)	365
HhaI	GCGC	2 cut(s)	289, 352
Hin1II	CATG	3 cut(s)	208, 383, 573
Hin6I	GCGC	2 cut(s)	287, 350
HinP1I	GCGC	2 cut(s)	287, 350
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	330, 439
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	448
Hpy188III	TCNNGA	2 cut(s)	205, 334
HpyAV	CCTTC	1 cut(s)	549
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	7 cut(s)	101, 191, 389, 397, 475, 561, 569
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 107, 284, 347, 380, 400
HpyF3I	CTNAG	2 cut(s)	290, 526
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	208, 383, 573
HspAI	GCGC	2 cut(s)	287, 350
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	7 cut(s)	19, 231, 262, 358, 370, 373, 381
LweI	GCATC	5 cut(s)	40, 75, 161, 262, 462
MaeI	CTAG	2 cut(s)	284, 500
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	2 cut(s)	20, 69
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	339
MnlI	CCTC	2 cut(s)	10, 461
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	255
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	3 cut(s)	141, 302, 365
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	2 cut(s)	141, 302
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	6 cut(s)	59, 107, 284, 347, 380, 400
NciI	CCSGG	1 cut(s)	365
NlaIII	CATG	3 cut(s)	208, 383, 573
NspI	RCATGY	1 cut(s)	383
PagI	TCATGA	1 cut(s)	204
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	439
PkrI	GCNGC	8 cut(s)	34, 246, 277, 373, 385, 388, 396, 576
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	139, 300
PspGI	CCWGG	2 cut(s)	139, 300
PspPI	GGNCC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	8 cut(s)	33, 245, 276, 372, 384, 387, 395, 575
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	3 cut(s)	141, 302, 365
SetI	ASST	8 cut(s)	96, 106, 215, 232, 246, 261, 306, 505
SfaNI	GCATC	5 cut(s)	40, 75, 161, 262, 462
Sse9I	AATT	2 cut(s)	20, 69
SsiI	CCGC	2 cut(s)	278, 574
SspMI	CTAG	2 cut(s)	284, 500
StyD4I	CCNGG	3 cut(s)	139, 300, 363
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	215
TasI	AATT	2 cut(s)	20, 69
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseI	GCWGC	7 cut(s)	32, 244, 275, 371, 383, 386, 394
TspDTI	ATGAA	1 cut(s)	193
XceI	RCATGY	1 cut(s)	383
XspI	CTAG	2 cut(s)	284, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.