Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012330

Physical Location & Seq

Genomic Coordinates Reverse (-)

3111432 .. 3113309

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0040000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCGTCCAGTACGTCTCCGACCTCTGCATTGTCACCGCTGGGGCCACGACGAGTCCAGGCTCAACTTGCCACAGAGGAATGTCTCTCTCTTCCACAAGATCATACCTCCGCTCGCAAGTACTCGCCGGAGACCATTTTGCTGATTGTGTCGAATCTGTTTTTGTCAAGTGGTTTTGTTGTGATGCTTTTTCATTATGATGGTAACGTTGAGGAGTGGATGCAATTTCAATGGAATGATCTTGTCATTTATGTGTCTGCAGTCAATCAAACAAAATGGTGGTTCGCAAAGCGTTTCTTACATCCTGATATAGTTGATCAATATAGTCGCATTCTTCTACGGGATGAGGACCTTGGAGTTGACAATTTCAATCCTCAACGGTATGTGTCCATTGTTCGAAAGGAAGGGCTTGAAATATCACAACCGGCACTTGATTTTTTCAAGACAGAGGTGAACTACATGGAGAAACTTTCAAAAGATGAGGGGATTCAGAAGAAACTCAACAATGATATTTTGCAATATAAAGCTCATATAATCAAGATATTTGTGGAACATAGGCACAATTGGATCTCTGCAGATTTAGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0005975 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010154 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0022414 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0033993 GO:0034284 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0045995 GO:0046460 GO:0046463 GO:0046486 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0071704 GO:0097305 GO:0098827 GO:1900140 GO:1901576 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00561 ko00830 ko01100 ko04975 map00561 map00830 map01100 map04975

Pfam Domains

Protein Families

MBOAT

Protein Analysis

196

Amino Acids

22.84

Weight (kDa)

5.67

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF707	PF05212	52 - 160	6.6e-49	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19450
fragaria_vesca	FvH4_1g07910
malus_domestica	MD02G1082600.v1.1 MD15G1210700.v1.1
prunus_persica	Prupe.7G206100_v2.0.a1
pyrus_communis	pycom02g06550 pycom15g18660
rosa_chinensis	RchiOBHm_Chr2g0093781
rosa_laevigata	RLG00000016436
rosa_multiflora	Rmu_sc0002126.1_g000005 Rmu_sc0012116.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147810
rosa_rugosa	Rorug02G0039700 Rorug02G0039800 Rorug02G0039900 Rorug02G0040000
rosa_samantha	Rh2AG086200 Rh2BG086500 Rh2DG084600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	2 cut(s)	38, 111
AclI	AACGTT	1 cut(s)	207
AclWI	GGATC	1 cut(s)	575
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	13, 122
AgsI	TTSAA	5 cut(s)	230, 370, 413, 442, 474
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	527
AluI	AGCT	1 cut(s)	527
Alw26I	GTCTC	3 cut(s)	21, 89, 125
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	44, 349
AsuHPI	GGTGA	2 cut(s)	27, 463
AsuII	TTCGAA	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	349
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	59
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	3 cut(s)	21, 89, 125
BfmI	CTRYAG	2 cut(s)	258, 573
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	44, 349
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	174, 210
Bpu14I	TTCGAA	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	352
Bse118I	RCCGGY	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	3 cut(s)	225, 301, 349
BseNI	ACTGG	1 cut(s)	9
BseRI	GAGGAG	1 cut(s)	227
BseYI	CCCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	128, 425
BsmAI	GTCTC	3 cut(s)	21, 89, 125
BsmBI	CGTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	100, 238, 316, 567
BspACI	CCGC	2 cut(s)	38, 111
BspANI	GGCC	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	2 cut(s)	262, 577
BspPI	GGATC	1 cut(s)	575
BspT104I	TTCGAA	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	4 cut(s)	100, 238, 316, 567
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	225, 301, 349
BstKTI	GATC	4 cut(s)	103, 241, 319, 570
BstMAI	GTCTC	3 cut(s)	21, 89, 125
BstMBI	GATC	4 cut(s)	100, 238, 316, 567
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	2 cut(s)	258, 573
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	3 cut(s)	225, 301, 349
Cac8I	GCNNGC	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	44, 349
Csp6I	GTAC	2 cut(s)	12, 121
CviAII	CATG	1 cut(s)	460
CviJI	RGCY	4 cut(s)	46, 62, 409, 527
CviKI_1	RGCY	4 cut(s)	46, 62, 409, 527
CviQI	GTAC	2 cut(s)	12, 121
DpnI	GATC	4 cut(s)	102, 240, 318, 569
DpnII	GATC	4 cut(s)	100, 238, 316, 567
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	1 cut(s)	463
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FatI	CATG	1 cut(s)	459
FbaI	TGATCA	1 cut(s)	316
FokI	GGATG	3 cut(s)	232, 288, 356
GsaI	CCCAGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	2 cut(s)	128, 425
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	3 cut(s)	54, 154, 487
HpaII	CCGG	2 cut(s)	128, 425
HphI	GGTGA	2 cut(s)	27, 463
Hpy166II	GTNNAC	2 cut(s)	361, 454
Hpy188I	TCNGA	2 cut(s)	21, 492
Hpy188III	TCNNGA	3 cut(s)	305, 442, 538
Hpy8I	GTNNAC	2 cut(s)	361, 454
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	398
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	2 cut(s)	14, 207
HpyCH4V	TGCA	5 cut(s)	29, 223, 260, 517, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpySE526I	ACGT	2 cut(s)	14, 207
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	463
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	100, 238, 316, 567
LpnPI	CCDG	7 cut(s)	22, 26, 44, 71, 141, 318, 438
LweI	GCATC	2 cut(s)	174, 210
MaeII	ACGT	2 cut(s)	14, 207
MaeIII	GTNAC	2 cut(s)	33, 203
MalI	GATC	4 cut(s)	102, 240, 318, 569
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	4 cut(s)	100, 238, 316, 567
MboII	GAAGA	3 cut(s)	83, 326, 505
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	1 cut(s)	567
MluCI	AATT	3 cut(s)	224, 364, 562
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	8 cut(s)	34, 70, 118, 205, 340, 384, 442, 475
MslI	CAYNNNNRTG	2 cut(s)	198, 251
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	2 cut(s)	128, 425
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	562
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	4 cut(s)	100, 238, 316, 567
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	33
NspV	TTCGAA	1 cut(s)	397
PctI	GAATGC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	154, 487
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	349
Psp1406I	AACGTT	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	44, 349
PspPPI	RGGWCCY	1 cut(s)	349
PstI	CTGCAG	2 cut(s)	262, 577
PsuI	RGATCY	1 cut(s)	567
RsaI	GTAC	2 cut(s)	13, 122
RsaNI	GTAC	2 cut(s)	12, 121
RseI	CAYNNNNRTG	2 cut(s)	198, 251
Sau3AI	GATC	4 cut(s)	100, 238, 316, 567
Sau96I	GGNCC	2 cut(s)	44, 349
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	7 cut(s)	17, 26, 110, 210, 354, 453, 529
SfaNI	GCATC	2 cut(s)	174, 210
SfcI	CTRYAG	2 cut(s)	258, 573
SfuI	TTCGAA	1 cut(s)	397
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	2 cut(s)	198, 251
Sse9I	AATT	3 cut(s)	224, 364, 562
SsiI	CCGC	2 cut(s)	38, 111
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	2 cut(s)	17, 210
TaqI	TCGA	2 cut(s)	152, 397
TasI	AATT	3 cut(s)	224, 364, 562
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	154, 487
TseFI	GTSAC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	349
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.