Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002162.1

Orthogroup ID

OG0008927

Physical Location & Seq

Genomic Coordinates Reverse (-)

25362 .. 27472

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atggctcatgaagaagaagcaattaactcaaatgggtttcttcaaaacccagttgcggtacttggatccaatcctcctcctgtcaaaaagaagagaaacctcccaggaaacccagatcctgaggctgaagtaatagccttgtctccaaagactctgatggccaccaacagattcttgtgtgaaatatgtggtaagggatttcagagagaccaaaacctacagctgcaccgccgtggacacaaccttccatggaagctcaagcaaagaacaagcaaagagccgaggaagcgcgtctacgtgtgcccggaaaagagttgcgtccaccaccacccgtctagggcgctcggagatctgaccggaataaagaagcacttctgccgcaagcatggcgagaagaagtggaagtgtgagaagtgctccaagcggtacgcggtgcagtcggattggaaagctcactcaaagacctgtggcactagggagtacaaatgtgactgcggaactctattttcacggcgtgatagcttcatcacacaccgggccttctgtgatgccttagctgaagaaacagctagagtaaatgcagtatccaacatccacaacaatgcaatgcccagtaatatcaactatcatcactacatgggaaataatgcatcttcactactactaggacctccgaacatgccccaactacaattttcttctatttttaaaccaatctccagcaatgatacccctgacaccgtgagccaaaatacccgcggtctatctctttggatgggacagggatccaacagcacccacgaagaaatgactgttaataatcagcatcatcaccatcaacttgggtctgtgagttcatcagctggttcaatatttggtgatcctaataacattagtgtttcgtgttcagtgcctcctccgccttctgatcattatcaactgaattgggttcttggaagtaataacaagctttctacatcaaacaatgctcatcatcaagatcagttaacaatcacaagcactagtgctgctagctcacttccttctttgtacacacatcaaacgccttcagcaaatatgtcagccacagctttgttgcaaaaggcagcccaaattggtgcaacttccactgacacgtcatcactgcttggaagttttggattgaagtgcaacaacaacaatattactagtagtgctagtcaagcagtgattcaagttcaagatgggagcaaagtttgtggactctatggcactgtggagaacccaggagctcatgatcatctactgcacatgcatcaagcgaaacgccgccacatacagagcgaagagagcgccggaggagggcagactagggatttccttggtgttggcgtgcagaccatttgccactcttcaccaatcaatggatattgggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0008356 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

472

Amino Acids

51.74

Weight (kDa)

9.08

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	95 - 129	7.6e-21	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	133 - 157	4.7e-15	BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD	PF22992	160 - 199	1.6e-24	BIRD-IDD transcription factor, fourth C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03840 AT1G03840 AT5G44160 AT5G44160
fragaria_vesca	FvH4_6g26760 FvH4_6g26760 FvH4_6g26760
prunus_persica	Prupe.3G128100_v2.0.a1 Prupe.3G128100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c19g0500141 RchiOBHm_Chr0c19g0500151 RchiOBHm_Chr2g0128541
rosa_laevigata	RLG00000018991
rosa_multiflora	Rmu_sc0002162.1_g000007
rosa_roxburghii	Rroxscaffold_2G00115690 Rroxscaffold_2G00116120
rosa_rugosa	Rorug02G0277800
rosa_samantha	Rh2AG329200 Rh2BG338900 Rh2CG315900 Rh2DG355800
rosa_wichuraiana	Rw2G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1403
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	3 cut(s)	291, 431, 759
AclWI	GGATC	6 cut(s)	60, 73, 110, 780, 793, 875
AcoI	YGGCCR	1 cut(s)	159
AcuI	CTGAAG	3 cut(s)	147, 579, 1053
AdeI	CACNNNGTG	1 cut(s)	515
AfaI	GTAC	4 cut(s)	60, 428, 482, 1052
AfiI	CCNNNNNNNGG	4 cut(s)	55, 337, 1341, 1403
AflIII	ACRYGT	2 cut(s)	297, 1134
AgsI	TTSAA	5 cut(s)	44, 870, 1165, 1214, 1220
AhlI	ACTAGT	2 cut(s)	1022, 1187
AjiI	CACGTC	1 cut(s)	1137
AjnI	CCWGG	2 cut(s)	103, 1264
AleI	CACNNNNGTG	1 cut(s)	231
Alw21I	GWGCWC	2 cut(s)	419, 1273
Alw26I	GTCTC	2 cut(s)	147, 201
AlwI	GGATC	6 cut(s)	60, 73, 110, 780, 793, 875
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	159, 537
ApeKI	GCWGC	3 cut(s)	223, 1028, 1106
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	3 cut(s)	291, 343, 1334
AspS9I	GGNCC	2 cut(s)	537, 668
AsuC2I	CCSGG	2 cut(s)	305, 536
AsuHPI	GGTGA	3 cut(s)	824, 890, 1386
AsuNHI	GCTAGC	1 cut(s)	1031
AvaII	GGWCC	1 cut(s)	668
AxyI	CCTNAGG	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	161
BamHI	GGATCC	2 cut(s)	65, 785
BanII	GRGCYC	1 cut(s)	1273
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
Bbv12I	GWGCWC	2 cut(s)	419, 1273
BbvI	GCAGC	3 cut(s)	210, 1015, 1118
BccI	CCATC	4 cut(s)	151, 769, 843, 1217
BceAI	ACGGC	2 cut(s)	216, 527
BciT130I	CCWGG	2 cut(s)	105, 1266
BciVI	GTATCC	1 cut(s)	595
BclI	TGATCA	2 cut(s)	928, 1276
BcnI	CCSGG	2 cut(s)	305, 536
BcoDI	GTCTC	2 cut(s)	147, 201
BcuI	ACTAGT	2 cut(s)	1022, 1187
BfaI	CTAG	9 cut(s)	336, 474, 570, 665, 1023, 1032, 1188, 1197, 1350
BfmI	CTRYAG	1 cut(s)	218
BfoI	RGCGCY	2 cut(s)	344, 1335
BfuI	GTATCC	1 cut(s)	595
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	5 cut(s)	224, 379, 1029, 1107, 1309
BlsI	GCNGC	5 cut(s)	225, 380, 1030, 1108, 1310
Bme1390I	CCNGG	4 cut(s)	105, 305, 536, 1266
Bme18I	GGWCC	1 cut(s)	668
BmgBI	CACGTC	1 cut(s)	1137
BmgT120I	GGNCC	2 cut(s)	537, 668
BmiI	GGNNCC	2 cut(s)	67, 787
BmrFI	CCNGG	4 cut(s)	105, 305, 536, 1266
BmrI	ACTGGG	2 cut(s)	44, 606
BmsI	GCATC	4 cut(s)	538, 659, 835, 1303
BmtI	GCTAGC	1 cut(s)	1035
BmuI	ACTGGG	2 cut(s)	44, 606
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	1 cut(s)	703
Bpu10I	CCTNAGC	1 cut(s)	553
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	305, 536
BsaAI	YACGTR	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	933
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	7 cut(s)	103, 232, 248, 281, 757, 1264, 1360
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 337, 1341, 1403
Bse1I	ACTGG	2 cut(s)	50, 612
Bse21I	CCTNAGG	1 cut(s)	120
Bse3DI	GCAATG	2 cut(s)	612, 730
Bse8I	GATNNNNATC	1 cut(s)	933
BseBI	CCWGG	2 cut(s)	105, 1266
BseDI	CCNNGG	7 cut(s)	103, 232, 248, 281, 757, 1264, 1360
BseGI	GGATG	2 cut(s)	591, 780
BseJI	GATNNNNATC	1 cut(s)	933
BseLI	CCNNNNNNNGG	4 cut(s)	55, 337, 1341, 1403
BseMI	GCAATG	2 cut(s)	612, 730
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	50, 612
BseRI	GAGGAG	3 cut(s)	66, 906, 1353
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	3 cut(s)	210, 1015, 1118
BsgI	GTGCAG	4 cut(s)	209, 455, 1271, 1394
Bsh1236I	CGCG	3 cut(s)	291, 431, 759
BshFI	GGCC	2 cut(s)	161, 539
BsiHKAI	GWGCWC	2 cut(s)	419, 1273
BsiSI	CCGG	4 cut(s)	305, 357, 535, 1335
BslFI	GGGAC	1 cut(s)	792
BslI	CCNNNNNNNGG	4 cut(s)	55, 337, 1341, 1403
BsmAI	GTCTC	2 cut(s)	147, 201
BsmFI	GGGAC	1 cut(s)	792
BsnI	GGCC	2 cut(s)	161, 539
Bso31I	GGTCTC	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	305, 419, 1273
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp143I	GATC	8 cut(s)	65, 115, 349, 785, 880, 928, 1000, 1276
Bsp19I	CCATGG	1 cut(s)	248
BspANI	GGCC	2 cut(s)	161, 539
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	3 cut(s)	291, 431, 759
BspHI	TCATGA	2 cut(s)	7, 1273
BspLI	GGNNCC	2 cut(s)	67, 787
BspOI	GCTAGC	1 cut(s)	1035
BspPI	GGATC	6 cut(s)	60, 73, 110, 780, 793, 875
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	2 cut(s)	612, 730
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	2 cut(s)	50, 612
BssECI	CCNNGG	7 cut(s)	103, 232, 248, 281, 757, 1264, 1360
BssMI	GATC	8 cut(s)	65, 115, 349, 785, 880, 928, 1000, 1276
BssT1I	CCWWGG	2 cut(s)	248, 1360
Bst2UI	CCWGG	2 cut(s)	105, 1266
Bst4CI	ACNGT	3 cut(s)	742, 814, 1255
Bst6I	CTCTTC	3 cut(s)	86, 1320, 1396
BstAUI	TGTACA	1 cut(s)	1050
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	3 cut(s)	383, 1033, 1373
BstDEI	CTNAG	2 cut(s)	120, 553
BstDSI	CCRYGG	3 cut(s)	232, 248, 757
BstF5I	GGATG	2 cut(s)	591, 780
BstFNI	CGCG	3 cut(s)	291, 431, 759
BstH2I	RGCGCY	2 cut(s)	344, 1335
BstHHI	GCGC	3 cut(s)	291, 343, 1334
BstKTI	GATC	8 cut(s)	68, 118, 352, 788, 883, 931, 1003, 1279
BstMAI	GTCTC	2 cut(s)	147, 201
BstMBI	GATC	8 cut(s)	65, 115, 349, 785, 880, 928, 1000, 1276
BstMWI	GCNNNNNNNGC	5 cut(s)	286, 387, 919, 1202, 1329
BstNI	CCWGG	2 cut(s)	105, 1266
BstNSI	RCATGY	2 cut(s)	682, 1294
BstSCI	CCNGG	4 cut(s)	103, 303, 534, 1264
BstSFI	CTRYAG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	305
BstUI	CGCG	3 cut(s)	291, 431, 759
BstV1I	GCAGC	3 cut(s)	210, 1015, 1118
BstX2I	RGATCY	4 cut(s)	65, 115, 349, 785
BstXI	CCANNNNNNTGG	1 cut(s)	842
BstYI	RGATCY	4 cut(s)	65, 115, 349, 785
Bsu36I	CCTNAGG	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	161, 539
BtgI	CCRYGG	3 cut(s)	232, 248, 757
BtrI	CACGTC	1 cut(s)	1137
BtsCI	GGATG	2 cut(s)	591, 780
BtsI	GCAGTG	2 cut(s)	1142, 1212
BtsIMutI	CAGTG	5 cut(s)	915, 1128, 1142, 1212, 1251
Cac8I	GCNNGC	3 cut(s)	383, 1033, 1373
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	2 cut(s)	7, 1273
CfoI	GCGC	3 cut(s)	291, 343, 1334
Cfr13I	GGNCC	2 cut(s)	537, 668
Cfr42I	CCGCGG	1 cut(s)	760
CseI	GACGC	2 cut(s)	280, 307
Csp6I	GTAC	4 cut(s)	59, 427, 481, 1051
CspCI	CAANNNNNGTGG	2 cut(s)	1219, 1254
CviAII	CATG	7 cut(s)	8, 249, 386, 637, 679, 1274, 1291
CviQI	GTAC	4 cut(s)	59, 427, 481, 1051
DdeI	CTNAG	2 cut(s)	120, 553
DpnI	GATC	8 cut(s)	67, 117, 351, 787, 882, 930, 1002, 1278
DpnII	GATC	8 cut(s)	65, 115, 349, 785, 880, 928, 1000, 1276
DraI	TTTAAA	1 cut(s)	709
DraIII	CACNNNGTG	1 cut(s)	515
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	3 cut(s)	86, 1320, 1396
EarI	CTCTTC	3 cut(s)	86, 1320, 1396
EciI	GGCGGA	1 cut(s)	909
Ecl136II	GAGCTC	1 cut(s)	1271
Eco130I	CCWWGG	2 cut(s)	248, 1360
Eco24I	GRGCYC	1 cut(s)	1273
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	668
Eco53kI	GAGCTC	1 cut(s)	1271
Eco57I	CTGAAG	3 cut(s)	147, 579, 1053
Eco81I	CCTNAGG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	1271
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	103, 1264
EcoT14I	CCWWGG	2 cut(s)	248, 1360
EcoT22I	ATGCAT	2 cut(s)	652, 1296
EcoT38I	GRGCYC	1 cut(s)	1273
ErhI	CCWWGG	2 cut(s)	248, 1360
FaeI	CATG	7 cut(s)	11, 252, 389, 640, 682, 1277, 1294
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	792
FatI	CATG	7 cut(s)	7, 248, 385, 636, 678, 1273, 1290
FauI	CCCGC	1 cut(s)	764
FbaI	TGATCA	2 cut(s)	928, 1276
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	224, 379, 1029, 1107, 1309
FokI	GGATG	2 cut(s)	578, 787
FriOI	GRGCYC	1 cut(s)	1273
Fsp4HI	GCNGC	5 cut(s)	224, 379, 1029, 1107, 1309
FspBI	CTAG	9 cut(s)	336, 474, 570, 665, 1023, 1032, 1188, 1197, 1350
GlaI	GCGC	3 cut(s)	290, 342, 1333
GluI	GCNGC	5 cut(s)	224, 379, 1029, 1107, 1309
GsuI	CTGGAG	1 cut(s)	703
HaeII	RGCGCY	2 cut(s)	344, 1335
HaeIII	GGCC	2 cut(s)	161, 539
HapII	CCGG	4 cut(s)	305, 357, 535, 1335
HgaI	GACGC	2 cut(s)	280, 307
HhaI	GCGC	3 cut(s)	291, 343, 1334
Hin1II	CATG	7 cut(s)	11, 252, 389, 640, 682, 1277, 1294
Hin6I	GCGC	3 cut(s)	289, 341, 1332
HinP1I	GCGC	3 cut(s)	289, 341, 1332
HincII	GTYRAC	1 cut(s)	1008
HindII	GTYRAC	1 cut(s)	1008
HindIII	AAGCTT	1 cut(s)	968
HinfI	GANTC	4 cut(s)	151, 171, 1210, 1242
HpaI	GTTAAC	1 cut(s)	1008
HpaII	CCGG	4 cut(s)	305, 357, 535, 1335
HphI	GGTGA	3 cut(s)	824, 890, 1386
Hpy166II	GTNNAC	6 cut(s)	236, 295, 322, 1008, 1053, 1241
Hpy188I	TCNGA	7 cut(s)	156, 204, 347, 354, 442, 675, 928
Hpy188III	TCNNGA	5 cut(s)	8, 119, 998, 1220, 1274
Hpy8I	GTNNAC	6 cut(s)	236, 295, 322, 1008, 1053, 1241
HpyAV	CCTTC	5 cut(s)	254, 550, 933, 1053, 1077
HpyCH4III	ACNGT	3 cut(s)	742, 814, 1255
HpyCH4IV	ACGT	2 cut(s)	297, 1136
HpyF10VI	GCNNNNNNNGC	5 cut(s)	286, 387, 919, 1202, 1329
HpyF3I	CTNAG	2 cut(s)	120, 553
HpySE526I	ACGT	2 cut(s)	297, 1136
Hsp92II	CATG	7 cut(s)	11, 252, 389, 640, 682, 1277, 1294
HspAI	GCGC	3 cut(s)	289, 341, 1332
Ksp22I	TGATCA	2 cut(s)	928, 1276
KspAI	GTTAAC	1 cut(s)	1008
KspI	CCGCGG	1 cut(s)	760
Kzo9I	GATC	8 cut(s)	65, 115, 349, 785, 880, 928, 1000, 1276
LmnI	GCTCC	3 cut(s)	422, 1227, 1268
Lsp1109I	GCAGC	3 cut(s)	210, 1015, 1118
LweI	GCATC	4 cut(s)	538, 659, 835, 1303
MaeI	CTAG	9 cut(s)	336, 474, 570, 665, 1023, 1032, 1188, 1197, 1350
MaeII	ACGT	2 cut(s)	297, 1136
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	8 cut(s)	67, 117, 351, 787, 882, 930, 1002, 1278
MboI	GATC	8 cut(s)	65, 115, 349, 785, 880, 928, 1000, 1276
MflI	RGATCY	4 cut(s)	65, 115, 349, 785
MhlI	GDGCHC	3 cut(s)	305, 419, 1273
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	4 cut(s)	21, 692, 943, 1113
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	2 cut(s)	145, 1236
MmeI	TCCRAC	3 cut(s)	420, 612, 813
Mox20I	TGGCCA	1 cut(s)	161
Mph1103I	ATGCAT	2 cut(s)	652, 1296
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	4 cut(s)	24, 708, 816, 1007
MslI	CAYNNNNRTG	2 cut(s)	231, 600
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	3 cut(s)	223, 759, 863
MspI	CCGG	4 cut(s)	305, 357, 535, 1335
MspR9I	CCNGG	4 cut(s)	105, 305, 536, 1266
MvaI	CCWGG	2 cut(s)	105, 1266
MvnI	CGCG	3 cut(s)	291, 431, 759
MwoI	GCNNNNNNNGC	5 cut(s)	286, 387, 919, 1202, 1329
NciI	CCSGG	2 cut(s)	305, 536
NcoI	CCATGG	1 cut(s)	248
NdeII	GATC	8 cut(s)	65, 115, 349, 785, 880, 928, 1000, 1276
NheI	GCTAGC	1 cut(s)	1031
NlaIII	CATG	7 cut(s)	11, 252, 389, 640, 682, 1277, 1294
NlaIV	GGNNCC	2 cut(s)	67, 787
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	488
NsiI	ATGCAT	2 cut(s)	652, 1296
NspI	RCATGY	2 cut(s)	682, 1294
OliI	CACNNNNGTG	1 cut(s)	231
PagI	TCATGA	2 cut(s)	7, 1273
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	171, 1210
PflMI	CCANNNNNTGG	1 cut(s)	1403
PkrI	GCNGC	5 cut(s)	225, 380, 1030, 1108, 1310
PleI	GAGTC	2 cut(s)	145, 1236
PpsI	GAGTC	2 cut(s)	145, 1236
Ppu21I	YACGTR	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	668
Psp124BI	GAGCTC	1 cut(s)	1273
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	2 cut(s)	103, 1264
PspGI	CCWGG	2 cut(s)	103, 1264
PspN4I	GGNNCC	2 cut(s)	67, 787
PspPI	GGNCC	2 cut(s)	537, 668
PspPPI	RGGWCCY	1 cut(s)	668
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	4 cut(s)	65, 115, 349, 785
PvuII	CAGCTG	2 cut(s)	223, 863
RsaI	GTAC	4 cut(s)	60, 428, 482, 1052
RsaNI	GTAC	4 cut(s)	59, 427, 481, 1051
RseI	CAYNNNNRTG	2 cut(s)	231, 600
SacI	GAGCTC	1 cut(s)	1273
SacII	CCGCGG	1 cut(s)	760
SaqAI	TTAA	4 cut(s)	24, 708, 816, 1007
SatI	GCNGC	5 cut(s)	224, 379, 1029, 1107, 1309
Sau3AI	GATC	8 cut(s)	65, 115, 349, 785, 880, 928, 1000, 1276
Sau96I	GGNCC	2 cut(s)	537, 668
SchI	GAGTC	2 cut(s)	145, 1236
ScrFI	CCNGG	4 cut(s)	105, 305, 536, 1266
SduI	GDGCHC	3 cut(s)	305, 419, 1273
SfaNI	GCATC	4 cut(s)	538, 659, 835, 1303
SfcI	CTRYAG	1 cut(s)	218
Sfr303I	CCGCGG	1 cut(s)	760
SgrBI	CCGCGG	1 cut(s)	760
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	2 cut(s)	231, 600
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SpeI	ACTAGT	2 cut(s)	1022, 1187
Sse9I	AATT	4 cut(s)	21, 692, 943, 1113
SspI	AATATT	2 cut(s)	873, 1183
SspMI	CTAG	9 cut(s)	336, 474, 570, 665, 1023, 1032, 1188, 1197, 1350
SstI	GAGCTC	1 cut(s)	1273
StyD4I	CCNGG	4 cut(s)	103, 303, 534, 1264
StyI	CCWWGG	2 cut(s)	248, 1360
TaaI	ACNGT	3 cut(s)	742, 814, 1255
TaiI	ACGT	2 cut(s)	300, 1139
TasI	AATT	4 cut(s)	21, 692, 943, 1113
TatI	WGTACW	2 cut(s)	480, 1050
TauI	GCSGC	2 cut(s)	381, 1311
TfiI	GAWTC	2 cut(s)	171, 1210
Tru1I	TTAA	4 cut(s)	24, 708, 816, 1007
Tru9I	TTAA	4 cut(s)	24, 708, 816, 1007
TscAI	CASTG	5 cut(s)	915, 1135, 1149, 1212, 1258
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	3 cut(s)	223, 1028, 1106
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	3 cut(s)	24, 514, 846
TspRI	CASTG	5 cut(s)	915, 1135, 1149, 1212, 1258
Van91I	CCANNNNNTGG	1 cut(s)	1403
VpaK11BI	GGWCC	1 cut(s)	668
XceI	RCATGY	2 cut(s)	682, 1294
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	9 cut(s)	336, 474, 570, 665, 1023, 1032, 1188, 1197, 1350
Zsp2I	ATGCAT	2 cut(s)	652, 1296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.