Rmu_sc0002263.1_g000022

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002263.1
OG0019355
Physical Location & Seq
Reverse (-)
96774 .. 97614
841 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 480 bp
atgttatcggatttgcagatgacatttgatgcaatgtgcagcatgctaatgagtttcactgaggattcattgttacggaagattgagaaagattgcactactatttcagatgcaatgttatccattccagtcatgattccaggcattagatattacaaaggcatcacgcaggcacgcagacgtcttatggaaacctttaaggacatgattgacagaagaagaagtgggaaggagtctcccgaagacttcctacagtccatgttagacagagattcataccctcccaatgaaaagcttcaagactgggagattatggacaacctattgacactgataattgcagggcagacaaccactgcagctgcgataatgtggagtgtcaagtttctggacgacaacaaagaagcccaagacagactcagagtaagtaacaaagggaaatttgttatgtcagtaggagagaagaagaaaatgtggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

159

Amino Acids

18.47

Weight (kDa)

6.35

Isoelectric Point (pI)

65.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 141 1.6e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019355)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0155041
rosa_multiflora Rmu_sc0002263.1_g000022 Rmu_sc0032631.1_g000002
rosa_roxburghii Rroxscaffold_3G00220030 Rroxscaffold_6G00423150 Rroxscaffold_6G00423790
rosa_samantha Rh4CG121300 Rh5BG085100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 181
AgsI TTSAA 1 cut(s) 299
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 295, 362
AluI AGCT 2 cut(s) 295, 362
Alw26I GTCTC 1 cut(s) 240
ApeKI GCWGC 3 cut(s) 39, 359, 362
ApoI RAATTY 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 294
BarI GAAGNNNNNNTAC 2 cut(s) 234, 266
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 51, 349, 371
BciT130I CCWGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 240
BfmI CTRYAG 2 cut(s) 251, 357
BisI GCNGC 3 cut(s) 40, 360, 363
BlsI GCNGC 3 cut(s) 41, 361, 364
Bme1390I CCNGG 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 313
BmsI GCATC 3 cut(s) 19, 100, 171
BmuI ACTGGG 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 128, 308
Bse3DI GCAATG 2 cut(s) 39, 120
BseBI CCWGG 1 cut(s) 141
BseMI GCAATG 2 cut(s) 39, 120
BseMII CTCAG 2 cut(s) 51, 433
BseNI ACTGG 2 cut(s) 128, 308
BseXI GCAGC 3 cut(s) 51, 349, 371
BsgI GTGCAG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 52, 432
BspHI TCATGA 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 361
BsrDI GCAATG 2 cut(s) 39, 120
BsrI ACTGG 2 cut(s) 128, 308
BssNI GRCGYC 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 181
BstC8I GCNNGC 3 cut(s) 44, 171, 175
BstDEI CTNAG 2 cut(s) 60, 419
BstMAI GTCTC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 2 cut(s) 251, 357
BstV1I GCAGC 3 cut(s) 51, 349, 371
BstV2I GAAGAC 1 cut(s) 249
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 3 cut(s) 57, 329, 354
Cac8I GCNNGC 3 cut(s) 44, 171, 175
CciI TCATGA 1 cut(s) 132
CviAII CATG 4 cut(s) 43, 133, 205, 259
CviJI RGCY 3 cut(s) 295, 362, 407
CviKI_1 RGCY 3 cut(s) 295, 362, 407
DdeI CTNAG 2 cut(s) 60, 419
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 4 cut(s) 46, 136, 208, 262
FaiI YATR 8 cut(s) 44, 134, 188, 206, 260, 277, 314, 449
FatI CATG 4 cut(s) 42, 132, 204, 258
Fnu4HI GCNGC 3 cut(s) 40, 360, 363
Fsp4HI GCNGC 3 cut(s) 40, 360, 363
GluI GCNGC 3 cut(s) 40, 360, 363
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 4 cut(s) 46, 136, 208, 262
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 5 cut(s) 65, 136, 233, 272, 417
Hpy188I TCNGA 3 cut(s) 10, 109, 422
Hpy188III TCNNGA 4 cut(s) 133, 239, 299, 389
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 7 cut(s) 16, 32, 39, 96, 113, 341, 359
HpyF3I CTNAG 2 cut(s) 60, 419
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 4 cut(s) 46, 136, 208, 262
LpnPI CCDG 7 cut(s) 126, 141, 153, 155, 289, 327, 374
Lsp1109I GCAGC 3 cut(s) 51, 349, 371
LweI GCATC 3 cut(s) 19, 100, 171
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 2 cut(s) 72, 428
MboII GAAGA 6 cut(s) 91, 228, 231, 254, 475, 478
MluCI AATT 2 cut(s) 336, 440
MlyI GAGTC 2 cut(s) 242, 411
MnlI CCTC 2 cut(s) 55, 291
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
NlaIII CATG 4 cut(s) 46, 136, 208, 262
NspI RCATGY 1 cut(s) 46
PaeI GCATGC 1 cut(s) 46
PagI TCATGA 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 3 cut(s) 65, 136, 272
PkrI GCNGC 3 cut(s) 41, 361, 364
PleI GAGTC 2 cut(s) 241, 411
PpsI GAGTC 2 cut(s) 241, 411
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PstI CTGCAG 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 3 cut(s) 40, 360, 363
SchI GAGTC 2 cut(s) 242, 411
ScrFI CCNGG 1 cut(s) 141
SetI ASST 5 cut(s) 184, 197, 297, 324, 364
SfaNI GCATC 3 cut(s) 19, 100, 171
SfcI CTRYAG 2 cut(s) 251, 357
SmiMI CAYNNNNRTG 1 cut(s) 47
SphI GCATGC 1 cut(s) 46
Sse9I AATT 2 cut(s) 336, 440
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 1 cut(s) 184
TasI AATT 2 cut(s) 336, 440
TfiI GAWTC 3 cut(s) 65, 136, 272
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 3 cut(s) 64, 336, 361
TseI GCWGC 3 cut(s) 39, 359, 362
TspDTI ATGAA 3 cut(s) 57, 264, 303
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 3 cut(s) 64, 336, 361
XapI RAATTY 1 cut(s) 440
XceI RCATGY 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 294
ZraI GACGTC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.