Rroxscaffold_6G00423790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019355
Physical Location & Seq
Reverse (-)
44937655 .. 44943163
5509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423790.1

Sequence Viewer

Length: 435 bp
ATGGTAACTCGAGCTACCGGCCACGAAACCTTCCCAAACTTCATCCACGGGTTCGCCTCGACCTTCGAAGCTCCCGAACCACCCTTGCACGGCGACGCCGTCTCGGAAGCGGCGGAACTCAACCCCAAACCGATCGAAACGGAGCAAAGGATCCCGATATCTCGAGCTACGGGACGACAATGTGATATTGAAGGTTGCTGTAGTAAGCATTACACCGGCTTGGAGTTCTTGGTCTGCAAATCCTTTCATGAGTTCGATCAACCCCAGGAGAAAAGCTCTAACACTCTACCCGTTTTCTTGCTATATGTATCTGTTGGTTTTCTTCTAAAAATGCAAGACGCTCACTTGGAGGAAAGCTCATCAAAACGCAATCAAGTTGCTCACAAACTTGCTAAGGCCATCTTCAATAAGAAGGTCCAAAGGGTCAAGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.13

Weight (kDa)

7.05

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019355)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0155041
rosa_multiflora Rmu_sc0002263.1_g000022 Rmu_sc0032631.1_g000002
rosa_roxburghii Rroxscaffold_3G00220030 Rroxscaffold_6G00423150 Rroxscaffold_6G00423790
rosa_samantha Rh4CG121300 Rh5BG085100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 113
AclWI GGATC 2 cut(s) 145, 158
AcoI YGGCCR 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 191, 406
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 5 cut(s) 14, 71, 167, 276, 357
AluI AGCT 5 cut(s) 14, 71, 167, 276, 357
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 145, 158
Ama87I CYCGRG 2 cut(s) 9, 162
AoxI GGCC 2 cut(s) 19, 396
AspS9I GGNCC 1 cut(s) 415
AsuII TTCGAA 1 cut(s) 66
AvaI CYCGRG 2 cut(s) 9, 162
AvaII GGWCC 1 cut(s) 415
BamHI GGATCC 1 cut(s) 150
BccI CCATC 1 cut(s) 407
BceAI ACGGC 2 cut(s) 83, 106
BciT130I CCWGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 106
BfmI CTRYAG 1 cut(s) 199
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 415
BmeT110I CYCGRG 2 cut(s) 9, 162
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 266
BplI GAGNNNNNCTC 4 cut(s) 260, 292, 341, 373
Bpu10I CCTNAGC 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 46, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 2 cut(s) 17, 215
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 46, 264
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 21, 398
BsiEI CGRYCG 1 cut(s) 135
BsiHKCI CYCGRG 2 cut(s) 9, 162
BsiSI CCGG 2 cut(s) 18, 216
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 2 cut(s) 21, 398
BsoBI CYCGRG 2 cut(s) 9, 162
Bsp119I TTCGAA 1 cut(s) 66
Bsp143I GATC 3 cut(s) 132, 150, 256
BspACI CCGC 2 cut(s) 110, 113
BspANI GGCC 2 cut(s) 21, 398
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 152
BspPI GGATC 2 cut(s) 145, 158
BspT104I TTCGAA 1 cut(s) 66
BsrFI RCCGGY 2 cut(s) 17, 215
BssAI RCCGGY 2 cut(s) 17, 215
BssECI CCNNGG 2 cut(s) 46, 264
BssMI GATC 3 cut(s) 132, 150, 256
BssNI GRCGYC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 393
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 3 cut(s) 135, 153, 259
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 3 cut(s) 132, 150, 256
BstMCI CGRYCG 1 cut(s) 135
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 2 cut(s) 21, 398
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 1 cut(s) 42
CciI TCATGA 1 cut(s) 247
Cfr10I RCCGGY 2 cut(s) 17, 215
Cfr13I GGNCC 1 cut(s) 415
CseI GACGC 2 cut(s) 104, 347
CviAII CATG 1 cut(s) 248
CviJI RGCY 8 cut(s) 14, 21, 71, 167, 219, 276, 357, 398
CviKI_1 RGCY 8 cut(s) 14, 21, 71, 167, 219, 276, 357, 398
DdeI CTNAG 1 cut(s) 393
DpnI GATC 3 cut(s) 134, 152, 258
DpnII GATC 3 cut(s) 132, 150, 256
EaeI YGGCCR 1 cut(s) 19
EciI GGCGGA 1 cut(s) 128
Eco32I GATATC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 415
Eco88I CYCGRG 2 cut(s) 9, 162
EcoRII CCWGG 1 cut(s) 264
EcoRV GATATC 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 1 cut(s) 251
FaiI YATR 3 cut(s) 249, 304, 306
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 186
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 2 cut(s) 21, 398
HapII CCGG 2 cut(s) 18, 216
HgaI GACGC 2 cut(s) 104, 347
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 251
HpaII CCGG 2 cut(s) 18, 216
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 4 cut(s) 74, 154, 162, 248
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 40, 73, 185, 406
HpyCH4V TGCA 3 cut(s) 88, 237, 334
HpyF3I CTNAG 1 cut(s) 393
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 3 cut(s) 132, 150, 256
LmnI GCTCC 2 cut(s) 76, 142
LpnPI CCDG 4 cut(s) 31, 229, 251, 278
MaeIII GTNAC 1 cut(s) 4
MalI GATC 3 cut(s) 134, 152, 258
MboI GATC 3 cut(s) 132, 150, 256
MboII GAAGA 2 cut(s) 314, 394
MflI RGATCY 1 cut(s) 150
MnlI CCTC 2 cut(s) 67, 343
MspI CCGG 2 cut(s) 18, 216
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
NdeII GATC 3 cut(s) 132, 150, 256
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 152
NspV TTCGAA 1 cut(s) 66
PaeR7I CTCGAG 2 cut(s) 9, 162
PagI TCATGA 1 cut(s) 247
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 96
PflFI GACNNNGTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 112
Ple19I CGATCG 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 415
PspXI VCTCGAGB 1 cut(s) 9
PsuI RGATCY 1 cut(s) 150
PsyI GACNNNGTC 1 cut(s) 98
PvuI CGATCG 1 cut(s) 135
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 132, 150, 256
Sau96I GGNCC 1 cut(s) 415
ScrFI CCNGG 1 cut(s) 266
SetI ASST 9 cut(s) 16, 32, 65, 73, 169, 196, 278, 359, 417
SfcI CTRYAG 1 cut(s) 199
Sfr274I CTCGAG 2 cut(s) 9, 162
SfuI TTCGAA 1 cut(s) 66
SinI GGWCC 1 cut(s) 415
SlaI CTCGAG 2 cut(s) 9, 162
SmlI CTYRAG 2 cut(s) 9, 162
SmoI CTYRAG 2 cut(s) 9, 162
SsiI CCGC 2 cut(s) 110, 113
StyD4I CCNGG 1 cut(s) 264
TaqI TCGA 6 cut(s) 10, 59, 66, 135, 163, 255
TauI GCSGC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 31, 236
TspGWI ACGGA 1 cut(s) 155
Tth111I GACNNNGTC 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 415
XhoI CTCGAG 2 cut(s) 9, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.