Rroxscaffold_6G00423150

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019355
Physical Location & Seq
Forward (+)
44152528 .. 44176678
24151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423150.1

Sequence Viewer

Length: 735 bp
ATGGAAACCTTTAAGGACATGATTGACAAGAAGAAGTGGGAAGGAGTATCCGAAGACTTCCTACAATCCATGTTAGACAGAGATTCATACCCTCCCAATGAAAAGCTTCAAGACCGGGAGATTATGGACAACCTATTGACACCGATAATTGACAACCGGGGCGACACTGCAGCTGCGATAATGTGGAGTGTCAAGTTTCTAGACGAGAACAAAGAAGCCCAAGACAGACTCGAGACCGGTGTGGTGTCTTGTGATTTGATGTTTGAGAAAATGTATTCCTTGTGGTTTTCCATGAGCGGTTTGATGTCTCTTTGCGGACGTATTACTTACGATCGTGCGCACCGCAAGAGGCGCCTTGGGCTGCGGAGACCACCGGAGACGACGGCGGAGGCCGGAAAACCCGTTTTTGCTCCAAGATTGATAACTCGAGCTACCGGCCACGAAACCTTCCCAAACTTCACCCACGGGTTCGCCTTGACCTTCGAAGCTCCCGAACCTCCCTTGCACGGCGGCGCCGCCTGCGGAAGCGGCCGGAACTCGAACCGGCCGAGTTTGCGTACCGGAGGTCGGAGTAAGCCAAAAATTACCTCAAAAAGTCGGAAAGCCCCTAGGATTTCAAATTTTCGATTCTGCCTCCATGCTTTGAATCAGTTCAAACCATTTGGAGGGTTTGATAAGCACCCAGAGAGCTCCAAAACCGACAAGAATCACATTGATTGGTGGCCGAAATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

244

Amino Acids

27.83

Weight (kDa)

9.37

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019355)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0155041
rosa_multiflora Rmu_sc0002263.1_g000022 Rmu_sc0032631.1_g000002
rosa_roxburghii Rroxscaffold_3G00220030 Rroxscaffold_6G00423150 Rroxscaffold_6G00423790
rosa_samantha Rh4CG121300 Rh5BG085100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 339
AccB1I GGYRCC 2 cut(s) 351, 512
AccBSI CCGCTC 1 cut(s) 297
AciI CCGC 9 cut(s) 297, 315, 343, 364, 386, 510, 516, 522, 528
AcoI YGGCCR 4 cut(s) 436, 529, 545, 722
AcsI RAATTY 1 cut(s) 619
AcyI GRCGYC 2 cut(s) 352, 513
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 3 cut(s) 506, 567, 665
AgeI ACCGGT 1 cut(s) 236
AgsI TTSAA 4 cut(s) 110, 618, 646, 655
AluBI AGCT 5 cut(s) 106, 173, 431, 488, 690
AluI AGCT 5 cut(s) 106, 173, 431, 488, 690
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 4 cut(s) 227, 312, 361, 371
Ama87I CYCGRG 2 cut(s) 230, 426
AoxI GGCC 5 cut(s) 390, 436, 529, 545, 722
ApeKI GCWGC 3 cut(s) 170, 173, 361
ApoI RAATTY 1 cut(s) 619
AsiGI ACCGGT 1 cut(s) 236
Asp700I GAANNNNTTC 2 cut(s) 105, 650
AspA2I CCTAGG 1 cut(s) 608
AspLEI GCGC 3 cut(s) 340, 354, 515
AsuC2I CCSGG 2 cut(s) 116, 158
AsuHPI GGTGA 1 cut(s) 451
AsuII TTCGAA 1 cut(s) 483
AvaI CYCGRG 2 cut(s) 230, 426
AvrII CCTAGG 1 cut(s) 608
BanI GGYRCC 2 cut(s) 351, 512
BanII GRGCYC 1 cut(s) 692
BarI GAAGNNNNNNTAC 2 cut(s) 45, 77
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 692
BbvI GCAGC 3 cut(s) 160, 182, 348
BceAI ACGGC 2 cut(s) 399, 523
BciVI GTATCC 1 cut(s) 58
BcnI CCSGG 2 cut(s) 116, 158
BcoDI GTCTC 4 cut(s) 227, 312, 361, 371
BfaI CTAG 2 cut(s) 200, 609
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 2 cut(s) 355, 516
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 6 cut(s) 171, 174, 362, 511, 516, 529
BlnI CCTAGG 1 cut(s) 608
BlsI GCNGC 6 cut(s) 172, 175, 363, 512, 517, 530
Bme1390I CCNGG 2 cut(s) 116, 158
BmeT110I CYCGRG 2 cut(s) 230, 426
BmiI GGNNCC 2 cut(s) 353, 514
BmrFI CCNGG 2 cut(s) 116, 158
BpiI GAAGAC 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 483
BpuMI CCSGG 2 cut(s) 116, 158
BsaHI GRCGYC 2 cut(s) 352, 513
BsaI GGTCTC 2 cut(s) 227, 361
BsaJI CCNNGG 4 cut(s) 157, 355, 463, 608
BsaWI WCCGGW 3 cut(s) 236, 373, 560
Bsc4I CCNNNNNNNGG 3 cut(s) 506, 567, 665
Bse118I RCCGGY 3 cut(s) 236, 434, 543
BseDI CCNNGG 4 cut(s) 157, 355, 463, 608
BseLI CCNNNNNNNGG 3 cut(s) 506, 567, 665
BseX3I CGGCCG 2 cut(s) 529, 545
BseXI GCAGC 3 cut(s) 160, 182, 348
Bsh1285I CGRYCG 3 cut(s) 334, 532, 548
BshFI GGCC 5 cut(s) 392, 438, 531, 547, 724
BshNI GGYRCC 2 cut(s) 351, 512
BshTI ACCGGT 1 cut(s) 236
BsiEI CGRYCG 3 cut(s) 334, 532, 548
BsiHKAI GWGCWC 1 cut(s) 692
BsiHKCI CYCGRG 2 cut(s) 230, 426
BsiSI CCGG 9 cut(s) 115, 157, 237, 374, 393, 435, 532, 544, 561
BslI CCNNNNNNNGG 3 cut(s) 506, 567, 665
BsmAI GTCTC 4 cut(s) 227, 312, 361, 371
BsmBI CGTCTC 1 cut(s) 371
BsnI GGCC 5 cut(s) 392, 438, 531, 547, 724
Bso31I GGTCTC 2 cut(s) 227, 361
BsoBI CYCGRG 2 cut(s) 230, 426
Bsp119I TTCGAA 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 9 cut(s) 297, 315, 343, 364, 386, 510, 516, 522, 528
BspANI GGCC 5 cut(s) 392, 438, 531, 547, 724
BspLI GGNNCC 2 cut(s) 353, 514
BspMAI CTGCAG 1 cut(s) 172
BspT104I TTCGAA 1 cut(s) 483
BspT107I GGYRCC 2 cut(s) 351, 512
BspTNI GGTCTC 2 cut(s) 227, 361
BsrBI CCGCTC 1 cut(s) 297
BsrFI RCCGGY 3 cut(s) 236, 434, 543
BssAI RCCGGY 3 cut(s) 236, 434, 543
BssECI CCNNGG 4 cut(s) 157, 355, 463, 608
BssMI GATC 1 cut(s) 331
BssNI GRCGYC 2 cut(s) 352, 513
BssT1I CCWWGG 2 cut(s) 355, 608
BstACI GRCGYC 2 cut(s) 352, 513
BstBI TTCGAA 1 cut(s) 483
BstC8I GCNNGC 1 cut(s) 520
BstDSI CCRYGG 1 cut(s) 463
BstH2I RGCGCY 2 cut(s) 355, 516
BstHHI GCGC 3 cut(s) 340, 354, 515
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 4 cut(s) 227, 312, 361, 371
BstMBI GATC 1 cut(s) 331
BstMCI CGRYCG 3 cut(s) 334, 532, 548
BstMWI GCNNNNNNNGC 5 cut(s) 351, 358, 519, 528, 553
BstSCI CCNGG 2 cut(s) 114, 156
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 160, 182, 348
BstV2I GAAGAC 1 cut(s) 60
BstZI CGGCCG 2 cut(s) 529, 545
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 5 cut(s) 392, 438, 531, 547, 724
BtgI CCRYGG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 520
CfoI GCGC 3 cut(s) 340, 354, 515
Cfr10I RCCGGY 3 cut(s) 236, 434, 543
Csp6I GTAC 1 cut(s) 558
CspAI ACCGGT 1 cut(s) 236
CviAII CATG 4 cut(s) 19, 70, 292, 638
CviQI GTAC 1 cut(s) 558
DinI GGCGCC 2 cut(s) 353, 514
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
EaeI YGGCCR 4 cut(s) 436, 529, 545, 722
EagI CGGCCG 2 cut(s) 529, 545
EciI GGCGGA 1 cut(s) 401
Ecl136II GAGCTC 1 cut(s) 690
EclXI CGGCCG 2 cut(s) 529, 545
Eco130I CCWWGG 2 cut(s) 355, 608
Eco24I GRGCYC 1 cut(s) 692
Eco31I GGTCTC 2 cut(s) 227, 361
Eco52I CGGCCG 2 cut(s) 529, 545
Eco53kI GAGCTC 1 cut(s) 690
Eco88I CYCGRG 2 cut(s) 230, 426
EcoICRI GAGCTC 1 cut(s) 690
EcoT14I CCWWGG 2 cut(s) 355, 608
EcoT38I GRGCYC 1 cut(s) 692
EgeI GGCGCC 2 cut(s) 353, 514
EheI GGCGCC 2 cut(s) 353, 514
ErhI CCWWGG 2 cut(s) 355, 608
Esp3I CGTCTC 1 cut(s) 371
FaeI CATG 4 cut(s) 22, 73, 295, 641
FaiI YATR 6 cut(s) 20, 71, 88, 125, 293, 639
FatI CATG 4 cut(s) 18, 69, 291, 637
Fnu4HI GCNGC 6 cut(s) 171, 174, 362, 511, 516, 529
FriOI GRGCYC 1 cut(s) 692
Fsp4HI GCNGC 6 cut(s) 171, 174, 362, 511, 516, 529
FspAI RTGCGCAY 1 cut(s) 339
FspBI CTAG 2 cut(s) 200, 609
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 3 cut(s) 339, 353, 514
GluI GCNGC 6 cut(s) 171, 174, 362, 511, 516, 529
HaeII RGCGCY 2 cut(s) 355, 516
HaeIII GGCC 5 cut(s) 392, 438, 531, 547, 724
HapII CCGG 9 cut(s) 115, 157, 237, 374, 393, 435, 532, 544, 561
HhaI GCGC 3 cut(s) 340, 354, 515
Hin1I GRCGYC 2 cut(s) 352, 513
Hin1II CATG 4 cut(s) 22, 73, 295, 641
Hin6I GCGC 3 cut(s) 338, 352, 513
HinP1I GCGC 3 cut(s) 338, 352, 513
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 5 cut(s) 83, 228, 627, 646, 706
HpaII CCGG 9 cut(s) 115, 157, 237, 374, 393, 435, 532, 544, 561
HphI GGTGA 1 cut(s) 451
Hpy188I TCNGA 3 cut(s) 52, 570, 600
Hpy188III TCNNGA 5 cut(s) 110, 200, 232, 491, 732
Hpy99I CGWCG 1 cut(s) 385
HpyAV CCTTC 3 cut(s) 35, 457, 490
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 170, 505
HpyF10VI GCNNNNNNNGC 5 cut(s) 351, 358, 519, 528, 553
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 2 cut(s) 352, 513
Hsp92II CATG 4 cut(s) 22, 73, 295, 641
HspAI GCGC 3 cut(s) 338, 352, 513
KasI GGCGCC 2 cut(s) 351, 512
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 3 cut(s) 415, 493, 695
Lsp1109I GCAGC 3 cut(s) 160, 182, 348
MaeI CTAG 2 cut(s) 200, 609
MaeII ACGT 1 cut(s) 319
MalI GATC 1 cut(s) 333
MbiI CCGCTC 1 cut(s) 297
MboI GATC 1 cut(s) 331
MboII GAAGA 2 cut(s) 43, 65
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 3 cut(s) 147, 582, 619
Mly113I GGCGCC 2 cut(s) 352, 513
MlyI GAGTC 1 cut(s) 222
MmeI TCCRAC 2 cut(s) 548, 578
MnlI CCTC 8 cut(s) 102, 342, 382, 507, 557, 598, 644, 659
MroXI GAANNNNTTC 2 cut(s) 105, 650
MseI TTAA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 9 cut(s) 115, 157, 237, 374, 393, 435, 532, 544, 561
MspR9I CCNGG 2 cut(s) 116, 158
MwoI GCNNNNNNNGC 5 cut(s) 351, 358, 519, 528, 553
NarI GGCGCC 2 cut(s) 352, 513
NciI CCSGG 2 cut(s) 116, 158
NdeII GATC 1 cut(s) 331
NlaIII CATG 4 cut(s) 22, 73, 295, 641
NlaIV GGNNCC 2 cut(s) 353, 514
NmeAIII GCCGAG 1 cut(s) 573
NsbI TGCGCA 1 cut(s) 339
NspV TTCGAA 1 cut(s) 483
PaeR7I CTCGAG 2 cut(s) 230, 426
PcsI WCGNNNNNNNCGW 2 cut(s) 489, 545
PdmI GAANNNNTTC 2 cut(s) 105, 650
PfeI GAWTC 4 cut(s) 83, 627, 646, 706
PinAI ACCGGT 1 cut(s) 236
PkrI GCNGC 6 cut(s) 172, 175, 363, 512, 517, 530
Ple19I CGATCG 1 cut(s) 334
PleI GAGTC 1 cut(s) 222
PluTI GGCGCC 2 cut(s) 355, 516
PpsI GAGTC 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 692
PspN4I GGNNCC 2 cut(s) 353, 514
PspXI VCTCGAGB 1 cut(s) 426
PstI CTGCAG 1 cut(s) 172
PvuI CGATCG 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
SacI GAGCTC 1 cut(s) 692
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 6 cut(s) 171, 174, 362, 511, 516, 529
Sau3AI GATC 1 cut(s) 331
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 2 cut(s) 116, 158
SduI GDGCHC 1 cut(s) 692
SfcI CTRYAG 1 cut(s) 168
SfoI GGCGCC 2 cut(s) 353, 514
Sfr274I CTCGAG 2 cut(s) 230, 426
SfuI TTCGAA 1 cut(s) 483
SlaI CTCGAG 2 cut(s) 230, 426
SmlI CTYRAG 2 cut(s) 230, 426
SmoI CTYRAG 2 cut(s) 230, 426
Sse9I AATT 3 cut(s) 147, 582, 619
SsiI CCGC 9 cut(s) 297, 315, 343, 364, 386, 510, 516, 522, 528
SspDI GGCGCC 2 cut(s) 351, 512
SspMI CTAG 2 cut(s) 200, 609
SstI GAGCTC 1 cut(s) 692
StyD4I CCNGG 2 cut(s) 114, 156
StyI CCWWGG 2 cut(s) 355, 608
TaiI ACGT 1 cut(s) 322
TaqI TCGA 5 cut(s) 231, 427, 483, 539, 625
TasI AATT 3 cut(s) 147, 582, 619
TauI GCSGC 3 cut(s) 513, 518, 531
TfiI GAWTC 4 cut(s) 83, 627, 646, 706
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 172
TseI GCWGC 3 cut(s) 170, 173, 361
TspDTI ATGAA 2 cut(s) 75, 114
TspRI CASTG 1 cut(s) 172
XapI RAATTY 1 cut(s) 619
XbaI TCTAGA 1 cut(s) 199
XhoI CTCGAG 2 cut(s) 230, 426
XmaJI CCTAGG 1 cut(s) 608
XmnI GAANNNNTTC 2 cut(s) 105, 650
XspI CTAG 2 cut(s) 200, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.