Rroxscaffold_3G00220030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0019355
Physical Location & Seq
Forward (+)
2215914 .. 2217152
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220030.1

Sequence Viewer

Length: 486 bp
ATGAGGATGGGCAAGCGATCTAGTACGCGAGGAATTAGGGGATATTGGTTTTGGCCTTTTAGAAACGATCGGCTCTCTCTCTCGTCCGAAAACACGAAACCAAGAGCAAAGAAAACTCTCCGATCTCCTCCTTCCACCACGTGCCATCAAACGACGCCGGACAACCTCCAGTGGATTCGCCTCAACCTTGCGAAGCCACCCGTGGCGGTCTTGGGTCACGGCACAGCCGGGAAGGGCGGCGAAGGGATCGAGTTCGTACGGCCCCAATTTGGTTCCAAGTATGGTAACTCGAGCTACGGCCACGAAACCTTCCCAAACTTCATCCACGGGTTCGCCTTGACCTTCGAAGCTCCCGAACCACCCTTGCACGGCGGCGCTATCTCCGGAAGCGGCCGGAACTCAACCCCGAACCGATGGGAACGGAGCAAAGGATCCCGATATCTCGAGCTACGGGATGTCGTTTTGAGTGTTTCTTGGACTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.93

Weight (kDa)

10.58

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019355)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0155041
rosa_multiflora Rmu_sc0002263.1_g000022 Rmu_sc0032631.1_g000002
rosa_roxburghii Rroxscaffold_3G00220030 Rroxscaffold_6G00423150 Rroxscaffold_6G00423790
rosa_samantha Rh4CG121300 Rh5BG085100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 28
AccIII TCCGGA 1 cut(s) 383
AciI CCGC 4 cut(s) 206, 237, 372, 390
AclWI GGATC 3 cut(s) 254, 426, 439
AcoI YGGCCR 2 cut(s) 298, 391
AcvI CACGTG 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 155
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 2 cut(s) 25, 258
AfiI CCNNNNNNNGG 2 cut(s) 269, 368
AluBI AGCT 3 cut(s) 294, 350, 448
AluI AGCT 3 cut(s) 294, 350, 448
AlwI GGATC 3 cut(s) 254, 426, 439
Ama87I CYCGRG 2 cut(s) 289, 443
Aor13HI TCCGGA 1 cut(s) 383
AoxI GGCC 4 cut(s) 53, 260, 298, 391
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 229
AsuII TTCGAA 1 cut(s) 345
AvaI CYCGRG 2 cut(s) 289, 443
BamHI GGATCC 1 cut(s) 431
BbrPI CACGTG 1 cut(s) 141
BccI CCATC 2 cut(s) 153, 408
BceAI ACGGC 4 cut(s) 235, 275, 313, 385
BcnI CCSGG 1 cut(s) 229
BfaI CTAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 378
BisI GCNGC 3 cut(s) 238, 373, 391
BlsI GCNGC 3 cut(s) 239, 374, 392
Bme1390I CCNGG 1 cut(s) 229
BmeT110I CYCGRG 2 cut(s) 289, 443
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 3 cut(s) 263, 274, 433
BmrFI CCNGG 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 229
BsaAI YACGTR 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 201, 325
BsaWI WCCGGW 1 cut(s) 383
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 368
Bse1I ACTGG 2 cut(s) 169, 484
BseAI TCCGGA 1 cut(s) 383
BseDI CCNNGG 2 cut(s) 201, 325
BseGI GGATG 3 cut(s) 12, 321, 460
BseLI CCNNNNNNNGG 2 cut(s) 269, 368
BseNI ACTGG 2 cut(s) 169, 484
BseRI GAGGAG 1 cut(s) 117
BseX3I CGGCCG 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 28
Bsh1285I CGRYCG 2 cut(s) 70, 394
BshFI GGCC 4 cut(s) 55, 262, 300, 393
BsiEI CGRYCG 2 cut(s) 70, 394
BsiHKCI CYCGRG 2 cut(s) 289, 443
BsiSI CCGG 4 cut(s) 158, 228, 384, 394
BsiWI CGTACG 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 269, 368
BsnI GGCC 4 cut(s) 55, 262, 300, 393
BsoBI CYCGRG 2 cut(s) 289, 443
Bsp119I TTCGAA 1 cut(s) 345
Bsp13I TCCGGA 1 cut(s) 383
Bsp143I GATC 5 cut(s) 17, 67, 122, 246, 431
BspACI CCGC 4 cut(s) 206, 237, 372, 390
BspANI GGCC 4 cut(s) 55, 262, 300, 393
BspEI TCCGGA 1 cut(s) 383
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 3 cut(s) 263, 274, 433
BspPI GGATC 3 cut(s) 254, 426, 439
BspT104I TTCGAA 1 cut(s) 345
BsrI ACTGG 2 cut(s) 169, 484
BssECI CCNNGG 2 cut(s) 201, 325
BssMI GATC 5 cut(s) 17, 67, 122, 246, 431
BssNI GRCGYC 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 141
BstBI TTCGAA 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 14
BstDSI CCRYGG 2 cut(s) 201, 325
BstF5I GGATG 3 cut(s) 12, 321, 460
BstFNI CGCG 1 cut(s) 28
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 5 cut(s) 20, 70, 125, 249, 434
BstMBI GATC 5 cut(s) 17, 67, 122, 246, 431
BstMCI CGRYCG 2 cut(s) 70, 394
BstSCI CCNGG 1 cut(s) 227
BstUI CGCG 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BstZI CGGCCG 1 cut(s) 391
BsuRI GGCC 4 cut(s) 55, 262, 300, 393
BtgI CCRYGG 2 cut(s) 201, 325
BtsCI GGATG 3 cut(s) 12, 321, 460
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 14
CfoI GCGC 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 261
CseI GACGC 1 cut(s) 163
Csp6I GTAC 2 cut(s) 24, 257
CviQI GTAC 2 cut(s) 24, 257
DpnI GATC 5 cut(s) 19, 69, 124, 248, 433
DpnII GATC 5 cut(s) 17, 67, 122, 246, 431
DraIII CACNNNGTG 1 cut(s) 141
EaeI YGGCCR 2 cut(s) 298, 391
EagI CGGCCG 1 cut(s) 391
EclXI CGGCCG 1 cut(s) 391
Eco32I GATATC 1 cut(s) 440
Eco52I CGGCCG 1 cut(s) 391
Eco72I CACGTG 1 cut(s) 141
Eco88I CYCGRG 2 cut(s) 289, 443
EcoRV GATATC 1 cut(s) 440
FaiI YATR 1 cut(s) 282
Fnu4HI GCNGC 3 cut(s) 238, 373, 391
FokI GGATG 3 cut(s) 19, 308, 467
Fsp4HI GCNGC 3 cut(s) 238, 373, 391
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 376
GluI GCNGC 3 cut(s) 238, 373, 391
GsuI CTGGAG 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 4 cut(s) 55, 262, 300, 393
HapII CCGG 4 cut(s) 158, 228, 384, 394
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 155
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 1 cut(s) 175
HpaII CCGG 4 cut(s) 158, 228, 384, 394
Hpy188I TCNGA 2 cut(s) 88, 122
Hpy188III TCNNGA 4 cut(s) 353, 384, 435, 443
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 5 cut(s) 141, 226, 236, 319, 352
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 367
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 155
HspAI GCGC 1 cut(s) 375
Kpn2I TCCGGA 1 cut(s) 383
Kzo9I GATC 5 cut(s) 17, 67, 122, 246, 431
LmnI GCTCC 2 cut(s) 355, 423
LpnPI CCDG 6 cut(s) 171, 182, 241, 397, 407, 465
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 215, 284
MalI GATC 5 cut(s) 19, 69, 124, 248, 433
MboI GATC 5 cut(s) 17, 67, 122, 246, 431
MflI RGATCY 1 cut(s) 431
MluCI AATT 2 cut(s) 33, 266
MnlI CCTC 4 cut(s) 23, 138, 176, 191
MroI TCCGGA 1 cut(s) 383
MspI CCGG 4 cut(s) 158, 228, 384, 394
MspR9I CCNGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 28
NciI CCSGG 1 cut(s) 229
NdeII GATC 5 cut(s) 17, 67, 122, 246, 431
NlaIV GGNNCC 3 cut(s) 263, 274, 433
NmuCI GTSAC 1 cut(s) 215
NspV TTCGAA 1 cut(s) 345
PaeR7I CTCGAG 2 cut(s) 289, 443
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PfeI GAWTC 1 cut(s) 175
Pfl23II CGTACG 1 cut(s) 256
PkrI GCNGC 3 cut(s) 239, 374, 392
Ple19I CGATCG 1 cut(s) 70
PmaCI CACGTG 1 cut(s) 141
PmlI CACGTG 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 141
PspCI CACGTG 1 cut(s) 141
PspLI CGTACG 1 cut(s) 256
PspN4I GGNNCC 3 cut(s) 263, 274, 433
PspPI GGNCC 1 cut(s) 261
PspXI VCTCGAGB 1 cut(s) 289
PsuI RGATCY 1 cut(s) 431
PvuI CGATCG 1 cut(s) 70
RsaI GTAC 2 cut(s) 25, 258
RsaNI GTAC 2 cut(s) 24, 257
SatI GCNGC 3 cut(s) 238, 373, 391
Sau3AI GATC 5 cut(s) 17, 67, 122, 246, 431
Sau96I GGNCC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 229
SetI ASST 8 cut(s) 143, 168, 189, 296, 311, 344, 352, 450
Sfr274I CTCGAG 2 cut(s) 289, 443
SfuI TTCGAA 1 cut(s) 345
SlaI CTCGAG 2 cut(s) 289, 443
SmlI CTYRAG 2 cut(s) 289, 443
SmoI CTYRAG 2 cut(s) 289, 443
Sse9I AATT 2 cut(s) 33, 266
SsiI CCGC 4 cut(s) 206, 237, 372, 390
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 227
TaiI ACGT 1 cut(s) 143
TaqI TCGA 4 cut(s) 249, 290, 345, 444
TasI AATT 2 cut(s) 33, 266
TauI GCSGC 3 cut(s) 240, 375, 393
TfiI GAWTC 1 cut(s) 175
TscAI CASTG 1 cut(s) 176
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 1 cut(s) 176
XhoI CTCGAG 2 cut(s) 289, 443
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.