Rh5BG085100

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0019355
Physical Location & Seq
Forward (+)
7368275 .. 7369501
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG085100.1

Sequence Viewer

Length: 294 bp
ATGGAAACTTTTAAGGACATGATTGACAGAAGAAGAAGTGGGAAGGAGTCTCCAGAAGACTTCCTACAGTCCATGTTAGACAGAGATTCATACCCTCCCAATGAAAAGCTTCAAGACTGGGAGATTATGGACAACCTATTGACACTGATAATTGCAGGGCAGACAACCACTGCAGCTGCGATAATGTGGAGTGTCAAGTTTCTGGACGAGAACAAAGAAGCCCAAGACAGACTCAGAGTAAGTAACAAAGGGAAATTTGTTATGTCAGTAGGAGAGAAGAAGAAAATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

97

Amino Acids

11.36

Weight (kDa)

5.47

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 5 - 79 3.2e-10 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019355)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0155041
rosa_multiflora Rmu_sc0002263.1_g000022 Rmu_sc0032631.1_g000002
rosa_roxburghii Rroxscaffold_3G00220030 Rroxscaffold_6G00423150 Rroxscaffold_6G00423790
rosa_samantha Rh4CG121300 Rh5BG085100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 254
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 2 cut(s) 109, 176
AluI AGCT 2 cut(s) 109, 176
Alw26I GTCTC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 173, 176
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 108
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 163, 185
BcoDI GTCTC 1 cut(s) 54
BfmI CTRYAG 2 cut(s) 65, 171
BisI GCNGC 2 cut(s) 174, 177
BlsI GCNGC 2 cut(s) 175, 178
BmrI ACTGGG 1 cut(s) 127
BmuI ACTGGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 163, 185
BsmAI GTCTC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 246
BspMAI CTGCAG 1 cut(s) 175
BsrI ACTGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 54
BstSFI CTRYAG 2 cut(s) 65, 171
BstV1I GCAGC 2 cut(s) 163, 185
BstV2I GAAGAC 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 143, 168
CviAII CATG 2 cut(s) 19, 73
CviJI RGCY 3 cut(s) 109, 176, 221
CviKI_1 RGCY 3 cut(s) 109, 176, 221
DdeI CTNAG 1 cut(s) 233
FaeI CATG 2 cut(s) 22, 76
FaiI YATR 5 cut(s) 20, 74, 91, 128, 263
FatI CATG 2 cut(s) 18, 72
Fnu4HI GCNGC 2 cut(s) 174, 177
Fsp4HI GCNGC 2 cut(s) 174, 177
GluI GCNGC 2 cut(s) 174, 177
GsuI CTGGAG 1 cut(s) 36
Hin1II CATG 2 cut(s) 22, 76
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 3 cut(s) 47, 86, 231
Hpy188I TCNGA 1 cut(s) 236
Hpy188III TCNNGA 3 cut(s) 53, 113, 203
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 2 cut(s) 155, 173
HpyF3I CTNAG 1 cut(s) 233
Hsp92II CATG 2 cut(s) 22, 76
LpnPI CCDG 4 cut(s) 66, 103, 141, 188
Lsp1109I GCAGC 2 cut(s) 163, 185
MaeIII GTNAC 1 cut(s) 242
MboII GAAGA 5 cut(s) 42, 45, 68, 289, 292
MluCI AATT 2 cut(s) 150, 254
MlyI GAGTC 2 cut(s) 56, 225
MnlI CCTC 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 176
NlaIII CATG 2 cut(s) 22, 76
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 175, 178
PleI GAGTC 2 cut(s) 55, 225
PpsI GAGTC 2 cut(s) 55, 225
PstI CTGCAG 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 174, 177
SchI GAGTC 2 cut(s) 56, 225
SetI ASST 3 cut(s) 111, 138, 178
SfcI CTRYAG 2 cut(s) 65, 171
Sse9I AATT 2 cut(s) 150, 254
TaaI ACNGT 1 cut(s) 69
TasI AATT 2 cut(s) 150, 254
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 150, 175
TseI GCWGC 2 cut(s) 173, 176
TspDTI ATGAA 2 cut(s) 78, 117
TspRI CASTG 2 cut(s) 150, 175
XapI RAATTY 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.