Rmu_sc0002407.1_g000012

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002407.1
OG0018222
Physical Location & Seq
Forward (+)
72282 .. 72638
357 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
atgtgccactcctcttccccctccctccctcaccggccctctctattacgctctcggctagcgcaccccctcgactcccaccccttcttgttcaagcccgcgctcttcctctccccggacttcgattctgaggcctacatctccgacctccgaaccttcatccccttcgatatcctccgatccgagctccagtcctatctggcctccctcaaccacgagctcatcgacttcatcaaccgcgacttcgtcaacctcagcaccaagctcgtcgtcgatgtcgactccgccgtggtgcttctacgggccccactcctggagctcaaggagaagatcgagcagttcagaggctccgtgtag

Protein Analysis

118

Amino Acids

13.46

Weight (kDa)

5.9

Isoelectric Point (pI)

64.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG2_N PF06148 31 - 96 1.5e-16 COG2 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 279
AccII CGCG 2 cut(s) 101, 240
AciI CCGC 3 cut(s) 99, 238, 285
AclWI GGATC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 115, 313
AgsI TTSAA 1 cut(s) 94
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 4 cut(s) 187, 220, 265, 319
AluI AGCT 4 cut(s) 187, 220, 265, 319
Alw21I GWGCWC 3 cut(s) 189, 222, 321
AlwI GGATC 1 cut(s) 174
AoxI GGCC 4 cut(s) 35, 132, 201, 303
ApaI GGGCCC 1 cut(s) 307
AspLEI GCGC 2 cut(s) 64, 103
AspS9I GGNCC 3 cut(s) 36, 303, 304
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 23
AsuNHI GCTAGC 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 307
BanII GRGCYC 4 cut(s) 189, 222, 307, 321
BauI CACGAG 1 cut(s) 215
Bbv12I GWGCWC 3 cut(s) 189, 222, 321
BbvCI CCTCAGC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 1 cut(s) 314
BcnI CCSGG 1 cut(s) 116
BfaI CTAG 1 cut(s) 59
Bme1390I CCNGG 2 cut(s) 116, 314
BmgT120I GGNCC 3 cut(s) 36, 303, 304
BmiI GGNNCC 3 cut(s) 305, 306, 349
BmrFI CCNGG 2 cut(s) 116, 314
BmtI GCTAGC 1 cut(s) 62
BpmI CTGGAG 2 cut(s) 173, 335
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 114, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 313
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 114, 288
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 115, 313
BseMII CTCAG 2 cut(s) 120, 268
BseNI ACTGG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 307
Bsh1236I CGCG 2 cut(s) 101, 240
BshFI GGCC 4 cut(s) 37, 134, 203, 305
BsiHKAI GWGCWC 3 cut(s) 189, 222, 321
BsiSI CCGG 2 cut(s) 34, 116
BslI CCNNNNNNNGG 2 cut(s) 115, 313
BsnI GGCC 4 cut(s) 37, 134, 203, 305
Bsp120I GGGCCC 1 cut(s) 303
Bsp1286I GDGCHC 4 cut(s) 189, 222, 307, 321
Bsp143I GATC 2 cut(s) 179, 330
BspACI CCGC 3 cut(s) 99, 238, 285
BspANI GGCC 4 cut(s) 37, 134, 203, 305
BspCNI CTCAG 2 cut(s) 121, 267
BspFNI CGCG 2 cut(s) 101, 240
BspLI GGNNCC 3 cut(s) 305, 306, 349
BspOI GCTAGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 174
BspQI GCTCTTC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 114, 288
BssMI GATC 2 cut(s) 179, 330
BssSI CACGAG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 314
Bst6I CTCTTC 2 cut(s) 19, 110
BstC8I GCNNGC 2 cut(s) 60, 99
BstDEI CTNAG 2 cut(s) 129, 254
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 2 cut(s) 101, 240
BstHHI GCGC 2 cut(s) 64, 103
BstKTI GATC 2 cut(s) 182, 333
BstMBI GATC 2 cut(s) 179, 330
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 114, 312
BstSLI GKGCMC 1 cut(s) 307
BstUI CGCG 2 cut(s) 101, 240
BsuRI GGCC 4 cut(s) 37, 134, 203, 305
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 60, 99
CfoI GCGC 2 cut(s) 64, 103
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 3 cut(s) 36, 303, 304
DdeI CTNAG 2 cut(s) 129, 254
DpnI GATC 2 cut(s) 181, 332
DpnII GATC 2 cut(s) 179, 330
Eam1104I CTCTTC 2 cut(s) 19, 110
EarI CTCTTC 2 cut(s) 19, 110
EciI GGCGGA 1 cut(s) 274
Ecl136II GAGCTC 3 cut(s) 187, 220, 319
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 4 cut(s) 189, 222, 307, 321
Eco32I GATATC 1 cut(s) 172
Eco53kI GAGCTC 3 cut(s) 187, 220, 319
EcoICRI GAGCTC 3 cut(s) 187, 220, 319
EcoO109I RGGNCCY 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 312
EcoRV GATATC 1 cut(s) 172
EcoT38I GRGCYC 4 cut(s) 189, 222, 307, 321
FauI CCCGC 1 cut(s) 106
FblI GTMKAC 1 cut(s) 279
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 4 cut(s) 189, 222, 307, 321
FspBI CTAG 1 cut(s) 59
GlaI GCGC 2 cut(s) 63, 102
GsuI CTGGAG 2 cut(s) 173, 335
HaeIII GGCC 4 cut(s) 37, 134, 203, 305
HapII CCGG 2 cut(s) 34, 116
HhaI GCGC 2 cut(s) 64, 103
Hin6I GCGC 2 cut(s) 62, 101
HinP1I GCGC 2 cut(s) 62, 101
HincII GTYRAC 2 cut(s) 250, 280
HindII GTYRAC 2 cut(s) 250, 280
HinfI GANTC 3 cut(s) 74, 125, 281
HpaII CCGG 2 cut(s) 34, 116
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 250, 280
Hpy188I TCNGA 6 cut(s) 130, 145, 152, 179, 184, 344
Hpy8I GTNNAC 2 cut(s) 250, 280
Hpy99I CGWCG 2 cut(s) 272, 275
HpyAV CCTTC 3 cut(s) 94, 166, 175
HpyF3I CTNAG 2 cut(s) 129, 254
HspAI GCGC 2 cut(s) 62, 101
Kzo9I GATC 2 cut(s) 179, 330
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 3 cut(s) 192, 316, 353
LpnPI CCDG 6 cut(s) 47, 129, 185, 203, 299, 326
MaeI CTAG 1 cut(s) 59
MalI GATC 2 cut(s) 181, 332
MboI GATC 2 cut(s) 179, 330
MboII GAAGA 3 cut(s) 6, 97, 340
MhlI GDGCHC 4 cut(s) 189, 222, 307, 321
MlyI GAGTC 2 cut(s) 68, 275
MmeI TCCRAC 1 cut(s) 168
MspI CCGG 2 cut(s) 34, 116
MspR9I CCNGG 2 cut(s) 116, 314
MvaI CCWGG 1 cut(s) 314
MvnI CGCG 2 cut(s) 101, 240
NciI CCSGG 1 cut(s) 116
NdeII GATC 2 cut(s) 179, 330
NheI GCTAGC 1 cut(s) 58
NlaIV GGNNCC 3 cut(s) 305, 306, 349
NmeAIII GCCGAG 1 cut(s) 34
PceI AGGCCT 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 3 cut(s) 222, 276, 285
PfeI GAWTC 1 cut(s) 125
PflFI GACNNNGTC 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 312
PleI GAGTC 2 cut(s) 68, 275
PpsI GAGTC 2 cut(s) 68, 275
Psp124BI GAGCTC 3 cut(s) 189, 222, 321
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 3 cut(s) 305, 306, 349
PspOMI GGGCCC 1 cut(s) 303
PspPI GGNCC 3 cut(s) 36, 303, 304
PsyI GACNNNGTC 1 cut(s) 245
SacI GAGCTC 3 cut(s) 189, 222, 321
SalI GTCGAC 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 110
Sau3AI GATC 2 cut(s) 179, 330
Sau96I GGNCC 3 cut(s) 36, 303, 304
SchI GAGTC 2 cut(s) 68, 275
ScrFI CCNGG 2 cut(s) 116, 314
SduI GDGCHC 4 cut(s) 189, 222, 307, 321
SetI ASST 7 cut(s) 150, 158, 189, 222, 255, 267, 321
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 3 cut(s) 99, 238, 285
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 3 cut(s) 189, 222, 321
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 114, 312
TaqI TCGA 7 cut(s) 72, 123, 168, 225, 273, 279, 333
TfiI GAWTC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 148, 220
TspGWI ACGGA 1 cut(s) 340
Tth111I GACNNNGTC 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.