Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002480.1

Orthogroup ID

OG0017404

Physical Location & Seq

Genomic Coordinates Reverse (-)

26864 .. 28636

Gene Structure 1773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggcttccgtggcgatattctcttcgttgcgtcggcggaggtcgtcgtctctggaggcctttttagctccggtggacctctccgacgtggcgtttgtacagactctcgtttcggtcgctggtccggaaagtcgagctctttctcgtgcttttggagtctttgaacgactcccccgggtcaactctgccatgaacggtgtccatttccacgacttgaatcaggaaatctcgacccttctggatgtttttccgatcgacgaggttgagttgggggaggacgtgagggagcagattgagcttctgcagagacaggcaaggagggcgaggttgttgatcgacgaagccgacgaggagttgaggattcagctatttagtttcctacatgaattcgaggagggaagggtgccgaattcggatgatgtgtgggtgttcttcgatcagggattggggattagggatgccaagagctgcagacatgagattgagttcttggaagagcagattgtgaatcacgagggggatgttgagcctacactcttcgcctacgagtactccttcgccctcactctctccgccgctaacaatgacgtcgttctcggaaactgctcgatccctgcattcttcagcgacactaagaacttcacgttgttctggtcgatcatcaccatgacgagtgaccttgatttggagtcgctgagatcggatctgaagtggaagggcggggttccgatgaagttggagatggacaccaaggtgaaagtgacagtgggagggaaattgaagagcaagaaggtggggattaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

268

Amino Acids

30.28

Weight (kDa)

4.92

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	67 - 108	9e-07	PUB10-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017404)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g27340
rosa_laevigata	RLG00000027083
rosa_multiflora	Rmu_sc0002176.1_g000018 Rmu_sc0002480.1_g000008 Rmu_sc0004199.1_g000048 Rmu_sc0005267.1_g000010 Rmu_sc0005424.1_g000011
rosa_samantha	Rh1AG084100 Rh1BG175600 Rh1DG205400 Rh2CG344900 Rh5AG225400 Rh5DG231200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	403
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	4 cut(s)	37, 573, 576, 720
AclWI	GGATC	2 cut(s)	604, 711
AcsI	RAATTY	2 cut(s)	386, 409
AcuI	CTGAAG	2 cut(s)	607, 728
AcyI	GRCGYC	1 cut(s)	588
AfaI	GTAC	2 cut(s)	99, 551
AfiI	CCNNNNNNNGG	1 cut(s)	685
AgsI	TTSAA	3 cut(s)	164, 217, 781
AjiI	CACGTC	2 cut(s)	88, 280
AleI	CACNNNNGTG	1 cut(s)	752
AluBI	AGCT	5 cut(s)	68, 137, 298, 367, 468
AluI	AGCT	5 cut(s)	68, 137, 298, 367, 468
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	54, 301
AlwI	GGATC	2 cut(s)	604, 711
Ama87I	CYCGRG	1 cut(s)	174
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	468
ApoI	RAATTY	2 cut(s)	386, 409
ArsI	GACNNNNNNTTYG	4 cut(s)	77, 94, 109, 126
AspS9I	GGNCC	2 cut(s)	76, 122
AsuC2I	CCSGG	2 cut(s)	175, 176
AsuHPI	GGTGA	2 cut(s)	655, 766
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	2 cut(s)	76, 122
BanI	GGYRCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	139
BauI	CACGAG	2 cut(s)	144, 512
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	1 cut(s)	736
BcnI	CCSGG	2 cut(s)	175, 176
BcoDI	GTCTC	2 cut(s)	54, 301
BfmI	CTRYAG	2 cut(s)	302, 469
BisI	GCNGC	2 cut(s)	469, 576
BlsI	GCNGC	2 cut(s)	470, 577
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	2 cut(s)	175, 176
Bme18I	GGWCC	2 cut(s)	76, 122
BmeT110I	CYCGRG	1 cut(s)	174
BmgBI	CACGTC	2 cut(s)	88, 280
BmgT120I	GGNCC	2 cut(s)	76, 122
BmiI	GGNNCC	2 cut(s)	405, 726
BmrFI	CCNGG	2 cut(s)	175, 176
BmsI	GCATC	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	74
BpuMI	CCSGG	2 cut(s)	175, 176
BsaHI	GRCGYC	1 cut(s)	588
BsaJI	CCNNGG	4 cut(s)	9, 173, 174, 750
BsaWI	WCCGGW	2 cut(s)	70, 124
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	685
BseAI	TCCGGA	1 cut(s)	124
BseDI	CCNNGG	4 cut(s)	9, 173, 174, 750
BseGI	GGATG	4 cut(s)	247, 421, 463, 526
BseLI	CCNNNNNNNGG	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	686
BseRI	GAGGAG	2 cut(s)	365, 407
BseXI	GCAGC	1 cut(s)	455
Bsh1285I	CGRYCG	2 cut(s)	117, 255
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	403
BsiEI	CGRYCG	2 cut(s)	117, 255
BsiHKAI	GWGCWC	1 cut(s)	139
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	3 cut(s)	71, 125, 175
BslI	CCNNNNNNNGG	1 cut(s)	685
BsmAI	GTCTC	2 cut(s)	54, 301
BsmBI	CGTCTC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp13I	TCCGGA	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	7 cut(s)	252, 333, 436, 609, 657, 698, 703
BspACI	CCGC	4 cut(s)	37, 573, 576, 720
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	687
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	405, 726
BspMAI	CTGCAG	2 cut(s)	306, 473
BspPI	GGATC	2 cut(s)	604, 711
BspQI	GCTCTTC	2 cut(s)	489, 776
BspT107I	GGYRCC	1 cut(s)	403
BsrGI	TGTACA	1 cut(s)	97
BssECI	CCNNGG	4 cut(s)	9, 173, 174, 750
BssMI	GATC	7 cut(s)	252, 333, 436, 609, 657, 698, 703
BssNI	GRCGYC	1 cut(s)	588
BssSI	CACGAG	2 cut(s)	144, 512
BssT1I	CCWWGG	1 cut(s)	750
Bst2BI	CACGAG	2 cut(s)	144, 512
Bst4CI	ACNGT	2 cut(s)	197, 766
Bst6I	CTCTTC	4 cut(s)	28, 489, 542, 776
BstACI	GRCGYC	1 cut(s)	588
BstAUI	TGTACA	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	633, 695
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	4 cut(s)	247, 421, 463, 526
BstKTI	GATC	7 cut(s)	255, 336, 439, 612, 660, 701, 706
BstMAI	GTCTC	2 cut(s)	54, 301
BstMBI	GATC	7 cut(s)	252, 333, 436, 609, 657, 698, 703
BstMCI	CGRYCG	2 cut(s)	117, 255
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 65, 295, 320
BstSCI	CCNGG	2 cut(s)	173, 174
BstSFI	CTRYAG	2 cut(s)	302, 469
BstV1I	GCAGC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	2 cut(s)	88, 280
BtsCI	GGATG	4 cut(s)	247, 421, 463, 526
BtsIMutI	CAGTG	1 cut(s)	771
Cfr13I	GGNCC	2 cut(s)	76, 122
Cfr9I	CCCGGG	1 cut(s)	174
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	98, 550
CviAII	CATG	4 cut(s)	190, 383, 476, 667
CviJI	RGCY	9 cut(s)	5, 59, 68, 137, 298, 344, 367, 468, 529
CviKI_1	RGCY	9 cut(s)	5, 59, 68, 137, 298, 344, 367, 468, 529
CviQI	GTAC	2 cut(s)	98, 550
DdeI	CTNAG	2 cut(s)	633, 695
DpnI	GATC	7 cut(s)	254, 335, 438, 611, 659, 700, 705
DpnII	GATC	7 cut(s)	252, 333, 436, 609, 657, 698, 703
Eam1104I	CTCTTC	4 cut(s)	28, 489, 542, 776
EarI	CTCTTC	4 cut(s)	28, 489, 542, 776
EciI	GGCGGA	2 cut(s)	52, 562
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	76, 122
Eco53kI	GAGCTC	1 cut(s)	137
Eco57I	CTGAAG	2 cut(s)	607, 728
Eco88I	CYCGRG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	137
EcoRI	GAATTC	2 cut(s)	386, 409
EcoT14I	CCWWGG	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	750
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	4 cut(s)	193, 386, 479, 670
FaiI	YATR	4 cut(s)	191, 384, 477, 668
FatI	CATG	4 cut(s)	189, 382, 475, 666
FauI	CCCGC	1 cut(s)	713
Fnu4HI	GCNGC	2 cut(s)	469, 576
FokI	GGATG	4 cut(s)	254, 428, 470, 533
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	2 cut(s)	469, 576
GluI	GCNGC	2 cut(s)	469, 576
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	3 cut(s)	71, 125, 175
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	4 cut(s)	193, 386, 479, 670
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	7 cut(s)	103, 156, 168, 217, 361, 508, 689
HpaII	CCGG	3 cut(s)	71, 125, 175
HphI	GGTGA	2 cut(s)	655, 766
Hpy166II	GTNNAC	2 cut(s)	76, 181
Hpy188I	TCNGA	7 cut(s)	85, 252, 415, 599, 703, 708, 729
Hpy188III	TCNNGA	6 cut(s)	53, 125, 221, 229, 239, 512
Hpy8I	GTNNAC	2 cut(s)	76, 181
Hpy99I	CGWCG	7 cut(s)	36, 49, 89, 260, 341, 350, 593
HpyAV	CCTTC	5 cut(s)	245, 393, 565, 709, 784
HpyCH4III	ACNGT	2 cut(s)	197, 766
HpyCH4IV	ACGT	4 cut(s)	87, 279, 588, 644
HpyCH4V	TGCA	3 cut(s)	304, 471, 617
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 65, 295, 320
HpyF3I	CTNAG	2 cut(s)	633, 695
HpySE526I	ACGT	4 cut(s)	87, 279, 588, 644
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	4 cut(s)	193, 386, 479, 670
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	7 cut(s)	252, 333, 436, 609, 657, 698, 703
LguI	GCTCTTC	2 cut(s)	489, 776
LmnI	GCTCC	2 cut(s)	73, 286
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	448
MaeII	ACGT	4 cut(s)	87, 279, 588, 644
MaeIII	GTNAC	2 cut(s)	674, 760
MalI	GATC	7 cut(s)	254, 335, 438, 611, 659, 700, 705
MboI	GATC	7 cut(s)	252, 333, 436, 609, 657, 698, 703
MboII	GAAGA	6 cut(s)	15, 424, 506, 529, 613, 793
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	3 cut(s)	386, 409, 776
MlyI	GAGTC	4 cut(s)	97, 162, 165, 698
MmeI	TCCRAC	2 cut(s)	108, 717
MroI	TCCGGA	1 cut(s)	124
MslI	CAYNNNNRTG	2 cut(s)	665, 752
MspI	CCGG	3 cut(s)	71, 125, 175
MspR9I	CCNGG	2 cut(s)	175, 176
Mva1269I	GAATGC	1 cut(s)	617
MwoI	GCNNNNNNNGC	4 cut(s)	11, 65, 295, 320
NciI	CCSGG	2 cut(s)	175, 176
NdeII	GATC	7 cut(s)	252, 333, 436, 609, 657, 698, 703
NlaIII	CATG	4 cut(s)	193, 386, 479, 670
NlaIV	GGNNCC	2 cut(s)	405, 726
NmuCI	GTSAC	2 cut(s)	674, 760
OliI	CACNNNNGTG	1 cut(s)	752
PceI	AGGCCT	1 cut(s)	59
PciSI	GCTCTTC	2 cut(s)	489, 776
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 345
PctI	GAATGC	1 cut(s)	617
PfeI	GAWTC	3 cut(s)	217, 361, 508
PkrI	GCNGC	2 cut(s)	470, 577
Ple19I	CGATCG	1 cut(s)	255
PleI	GAGTC	4 cut(s)	97, 162, 164, 697
PpsI	GAGTC	4 cut(s)	97, 162, 164, 697
Psp124BI	GAGCTC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	405, 726
PspPI	GGNCC	2 cut(s)	76, 122
PstI	CTGCAG	2 cut(s)	306, 473
PsuI	RGATCY	1 cut(s)	703
PvuI	CGATCG	1 cut(s)	255
RsaI	GTAC	2 cut(s)	99, 551
RsaNI	GTAC	2 cut(s)	98, 550
RseI	CAYNNNNRTG	2 cut(s)	665, 752
SacI	GAGCTC	1 cut(s)	139
SapI	GCTCTTC	2 cut(s)	489, 776
SatI	GCNGC	2 cut(s)	469, 576
Sau3AI	GATC	7 cut(s)	252, 333, 436, 609, 657, 698, 703
Sau96I	GGNCC	2 cut(s)	76, 122
ScaI	AGTACT	1 cut(s)	551
SchI	GAGTC	4 cut(s)	97, 162, 165, 698
ScrFI	CCNGG	2 cut(s)	175, 176
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	2 cut(s)	302, 469
SinI	GGWCC	2 cut(s)	76, 122
SmaI	CCCGGG	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	665, 752
Sse9I	AATT	3 cut(s)	386, 409, 776
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	4 cut(s)	37, 573, 576, 720
SstI	GAGCTC	1 cut(s)	139
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	173, 174
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	2 cut(s)	197, 766
TaiI	ACGT	4 cut(s)	90, 282, 591, 647
TaqI	TCGA	8 cut(s)	133, 230, 255, 336, 390, 435, 608, 656
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	3 cut(s)	386, 409, 776
TatI	WGTACW	2 cut(s)	97, 549
TauI	GCSGC	1 cut(s)	578
TfiI	GAWTC	3 cut(s)	217, 361, 508
TscAI	CASTG	1 cut(s)	771
TseFI	GTSAC	2 cut(s)	674, 760
TseI	GCWGC	1 cut(s)	468
Tsp45I	GTSAC	2 cut(s)	674, 760
TspDTI	ATGAA	3 cut(s)	206, 399, 746
TspMI	CCCGGG	1 cut(s)	174
TspRI	CASTG	1 cut(s)	771
VpaK11BI	GGWCC	2 cut(s)	76, 122
XapI	RAATTY	2 cut(s)	386, 409
XmaI	CCCGGG	1 cut(s)	174
ZraI	GACGTC	1 cut(s)	589
ZrmI	AGTACT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.