Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002497.1

Orthogroup ID

OG0018233

Physical Location & Seq

Genomic Coordinates Forward (+)

29690 .. 30475

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgaccccgctactgtcgagcaacaagaatgaaaaatcttctgatcctgaaagctctagtgttggcgaaaactcacggaagactagtattaatacttttagatgtgatatatgtgttgagtcaattcctctggaagactcattcaccatcaagggttgcaaccatctttattgtcgaaaaggcattgtggatttgatcctcccaagcggggtcattgataggtggatcgatgacataaatgatgaaaacttagagggttgtgtagccatcacaactattggtgatgccacagaaactcacgagtttcctgaaaacaagccctctagcaacaacatcgctactcattccaaagagaagtactctgaagcaaatttgcagcacttaaacaaggcttattgtctagccatcaaaaagccaataaattttgcaagatctcatgagctacctgggattaagtgctccaaggcgattttacaacacctacaaggttgtgtaaaaaatccaacaacaaatggtaatgatgaagaaactcatgagttttctgaagatgatcactctgatgaagatgatgactatgaagctgaaattgaagaaagagaggatgacccggatcagtccagcgattttttgatgaatttatttgaaaagtttcatacttgtcttgagacaagtatgaaattttttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

229

Amino Acids

25.84

Weight (kDa)

4.6

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018233)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016610 RLG00000016612 RLG00000027698
rosa_multiflora	Rmu_sc0002497.1_g000005
rosa_rugosa	Rorug01G0291700 Rorug01G0291800
rosa_samantha	Rh1BG265400 Rh1BG265500 Rh1DG295400 Rh1DG295500 Rh2DG105200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	8, 207
AclWI	GGATC	4 cut(s)	38, 190, 233, 618
AcsI	RAATTY	4 cut(s)	370, 421, 634, 677
AcuI	CTGAAG	2 cut(s)	384, 564
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	590, 644
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	3 cut(s)	54, 442, 581
AluI	AGCT	3 cut(s)	54, 442, 581
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	4 cut(s)	38, 190, 233, 618
ApeKI	GCWGC	1 cut(s)	376
ApoI	RAATTY	4 cut(s)	370, 421, 634, 677
AseI	ATTAAT	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	648
AsuC2I	CCSGG	1 cut(s)	608
AsuHPI	GGTGA	2 cut(s)	136, 293
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	2 cut(s)	86, 141
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	4 cut(s)	155, 171, 275, 413
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	608
BcoDI	GTCTC	1 cut(s)	659
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	4 cut(s)	57, 84, 324, 401
BglII	AGATCT	1 cut(s)	431
BisI	GCNGC	1 cut(s)	377
BlsI	GCNGC	1 cut(s)	378
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	2 cut(s)	447, 608
BmrFI	CCNGG	2 cut(s)	447, 608
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	2 cut(s)	86, 141
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	1 cut(s)	608
Bsa29I	ATCGAT	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	446, 462
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	447
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	446, 462
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	388
BshVI	ATCGAT	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	608
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	6 cut(s)	43, 195, 225, 431, 550, 610
BspACI	CCGC	2 cut(s)	8, 207
BspDI	ATCGAT	1 cut(s)	228
BspHI	TCATGA	2 cut(s)	436, 532
BspPI	GGATC	4 cut(s)	38, 190, 233, 618
BssECI	CCNNGG	2 cut(s)	446, 462
BssMI	GATC	6 cut(s)	43, 195, 225, 431, 550, 610
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	607
BstKTI	GATC	6 cut(s)	46, 198, 228, 434, 553, 613
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	6 cut(s)	43, 195, 225, 431, 550, 610
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	445, 606
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	2 cut(s)	86, 141
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
Bsu15I	ATCGAT	1 cut(s)	228
BsuTUI	ATCGAT	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	607
CciI	TCATGA	2 cut(s)	436, 532
ClaI	ATCGAT	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	437, 533
CviJI	RGCY	8 cut(s)	54, 266, 319, 392, 404, 415, 442, 581
CviKI_1	RGCY	8 cut(s)	54, 266, 319, 392, 404, 415, 442, 581
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	6 cut(s)	45, 197, 227, 433, 552, 612
DpnII	GATC	6 cut(s)	43, 195, 225, 431, 550, 610
Eco130I	CCWWGG	1 cut(s)	462
Eco57I	CTGAAG	2 cut(s)	384, 564
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	2 cut(s)	440, 536
FaiI	YATR	8 cut(s)	110, 112, 236, 438, 534, 576, 654, 674
FatI	CATG	2 cut(s)	436, 532
FauI	CCCGC	2 cut(s)	15, 200
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	1 cut(s)	377
FokI	GGATG	1 cut(s)	614
Fsp4HI	GCNGC	1 cut(s)	377
FspBI	CTAG	4 cut(s)	57, 84, 324, 401
GluI	GCNGC	1 cut(s)	377
HapII	CCGG	1 cut(s)	608
Hin1II	CATG	2 cut(s)	440, 536
HinfI	GANTC	2 cut(s)	119, 137
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	2 cut(s)	136, 293
Hpy188I	TCNGA	4 cut(s)	43, 364, 544, 559
Hpy188III	TCNNGA	7 cut(s)	47, 131, 299, 308, 437, 533, 662
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	159, 376, 428
HpyF3I	CTNAG	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	440, 536
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	6 cut(s)	43, 195, 225, 431, 550, 610
LmnI	GCTCC	1 cut(s)	464
LpnPI	CCDG	7 cut(s)	60, 116, 321, 432, 459, 621, 631
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	4 cut(s)	57, 84, 324, 401
MalI	GATC	6 cut(s)	45, 197, 227, 433, 552, 612
MboI	GATC	6 cut(s)	43, 195, 225, 431, 550, 610
MboII	GAAGA	7 cut(s)	30, 91, 146, 536, 557, 575, 602
MflI	RGATCY	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	6 cut(s)	123, 370, 421, 585, 634, 677
MlyI	GAGTC	2 cut(s)	128, 131
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	5 cut(s)	138, 209, 247, 331, 592
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	3 cut(s)	90, 383, 453
MslI	CAYNNNNRTG	1 cut(s)	558
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	447, 608
MvaI	CCWGG	1 cut(s)	447
NciI	CCSGG	1 cut(s)	608
NdeII	GATC	6 cut(s)	43, 195, 225, 431, 550, 610
NlaIII	CATG	2 cut(s)	440, 536
PagI	TCATGA	2 cut(s)	436, 532
PdmI	GAANNNNTTC	1 cut(s)	648
PkrI	GCNGC	1 cut(s)	378
PleI	GAGTC	2 cut(s)	127, 131
PpsI	GAGTC	2 cut(s)	127, 131
PshBI	ATTAAT	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	431
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	3 cut(s)	90, 383, 453
SatI	GCNGC	1 cut(s)	377
Sau3AI	GATC	6 cut(s)	43, 195, 225, 431, 550, 610
ScaI	AGTACT	1 cut(s)	359
SchI	GAGTC	2 cut(s)	128, 131
ScrFI	CCNGG	2 cut(s)	447, 608
SduI	GDGCHC	1 cut(s)	461
SetI	ASST	7 cut(s)	56, 224, 444, 448, 483, 490, 583
SfaNI	GCATC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	6 cut(s)	123, 370, 421, 585, 634, 677
SsiI	CCGC	2 cut(s)	8, 207
SspMI	CTAG	4 cut(s)	57, 84, 324, 401
StyD4I	CCNGG	2 cut(s)	445, 606
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	17, 175, 228
TasI	AATT	6 cut(s)	123, 370, 421, 585, 634, 677
TatI	WGTACW	1 cut(s)	357
Tru1I	TTAA	3 cut(s)	90, 383, 453
Tru9I	TTAA	3 cut(s)	90, 383, 453
TseI	GCWGC	1 cut(s)	376
TspDTI	ATGAA	8 cut(s)	45, 258, 537, 576, 591, 641, 647, 689
TspGWI	ACGGA	1 cut(s)	91
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	4 cut(s)	370, 421, 634, 677
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	4 cut(s)	57, 84, 324, 401
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.