Rmu_sc0002701.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002701.1
OG0018490
Physical Location & Seq
Reverse (-)
42055 .. 44688
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002701.1_g000020.1.cds

Sequence Viewer

Length: 699 bp
atgcagggaggatttgctacatcaccaagcataagtaacaccctctttaggacacccacaagccatggtgaggcccgaccgagacatgcatcccatagccctatgttcaagctacgctacggtattcggaagtgtcaaatatgtcgccgggaagccaccttccgggccttgcaaagttgcattcacaaatatgacttctacactagaatagttggtttagcatcccacatggaagaaaatgtgattgatgaaagatttcctctcgacccaccatcatccgcgttgttgaatcctggacaagggggaaatcaccgtcccgctactaagggcgaaaacactgttgtccagcttaatgaggctgtcgactcctctgcttctgtaaatgcttccaccacaagggatgttgttgctgtcgttgacgaactcactctgctccccatcccagaggatgcaagcttcagagatacactcaccatattgaagaccaatagtgataggcatggaaagaggttgaacagagagctttcgaagattaataaagaagttcagcgaagctcgcaggaggctagagagcagtatgatcagctcctagctgccatcactgatggacttgcagcttctcgcaaagaaattgtagcagggttcgcggcacactactacaataagttaatcaaacaacagatatttggagttgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.81

Weight (kDa)

9.17

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018490)

Species Orthologous Gene IDs
malus_domestica MD15G1044600.v1.1
rosa_chinensis RchiOBHm_Chr4g0400831
rosa_laevigata RLG00000022624
rosa_multiflora Rmu_co8395409.1_g000001 Rmu_sc0002701.1_g000020
rosa_roxburghii Rroxscaffold_1G00024720
rosa_rugosa Rorug01G0183700 Rorug04G0090900 Rorug05G0207800
rosa_samantha Rh6AG235800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 363
AccII CGCG 2 cut(s) 281, 647
AciI CCGC 3 cut(s) 279, 318, 647
AcuI CTGAAG 1 cut(s) 442
AfiI CCNNNNNNNGG 5 cut(s) 48, 70, 162, 299, 396
AgsI TTSAA 4 cut(s) 109, 289, 481, 514
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 8 cut(s) 112, 349, 456, 523, 555, 586, 593, 617
AluI AGCT 8 cut(s) 112, 349, 456, 523, 555, 586, 593, 617
Alw26I GTCTC 1 cut(s) 76
AoxI GGCC 2 cut(s) 72, 165
ApeKI GCWGC 2 cut(s) 593, 614
AseI ATTAAT 1 cut(s) 534
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 2 cut(s) 73, 165
AsuC2I CCSGG 2 cut(s) 149, 164
AsuHPI GGTGA 4 cut(s) 15, 80, 302, 463
AsuII TTCGAA 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 580, 626
BccI CCATC 4 cut(s) 280, 446, 599, 605
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 2 cut(s) 149, 164
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 3 cut(s) 204, 567, 590
BisI GCNGC 3 cut(s) 594, 615, 648
BlsI GCNGC 3 cut(s) 595, 616, 649
Bme1390I CCNGG 3 cut(s) 149, 164, 294
BmgT120I GGNCC 2 cut(s) 73, 165
BmrFI CCNGG 3 cut(s) 149, 164, 294
BmsI GCATC 3 cut(s) 98, 230, 439
BpiI GAAGAC 1 cut(s) 488
BplI GAGNNNNNCTC 2 cut(s) 453, 485
Bpu14I TTCGAA 1 cut(s) 527
BpuMI CCSGG 2 cut(s) 149, 164
BsaJI CCNNGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 5 cut(s) 48, 70, 162, 299, 396
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 6 cut(s) 89, 221, 275, 406, 438, 454
BseLI CCNNNNNNNGG 5 cut(s) 48, 70, 162, 299, 396
BseRI GAGGAG 1 cut(s) 358
BseXI GCAGC 2 cut(s) 580, 626
Bsh1236I CGCG 2 cut(s) 281, 647
Bsh1285I CGRYCG 1 cut(s) 80
BshFI GGCC 2 cut(s) 74, 167
BsiEI CGRYCG 1 cut(s) 80
BsiSI CCGG 2 cut(s) 148, 163
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 5 cut(s) 48, 70, 162, 299, 396
BsmAI GTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 300
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 2 cut(s) 74, 167
Bsp119I TTCGAA 1 cut(s) 527
Bsp143I GATC 1 cut(s) 580
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 3 cut(s) 279, 318, 647
BspANI GGCC 2 cut(s) 74, 167
BspFNI CGCG 2 cut(s) 281, 647
BspT104I TTCGAA 1 cut(s) 527
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 580
BssT1I CCWWGG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 3 cut(s) 122, 314, 340
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 2 cut(s) 454, 557
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 1 cut(s) 64
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 6 cut(s) 89, 221, 275, 406, 438, 454
BstFNI CGCG 2 cut(s) 281, 647
BstKTI GATC 1 cut(s) 583
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 580
BstMCI CGRYCG 1 cut(s) 80
BstMWI GCNNNNNNNGC 2 cut(s) 556, 644
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 3 cut(s) 147, 162, 292
BstUI CGCG 2 cut(s) 281, 647
BstV1I GCAGC 2 cut(s) 580, 626
BstV2I GAAGAC 1 cut(s) 488
BsuRI GGCC 2 cut(s) 74, 167
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 6 cut(s) 89, 221, 275, 406, 438, 454
BtsIMutI CAGTG 2 cut(s) 336, 600
Cac8I GCNNGC 2 cut(s) 454, 557
Cfr13I GGNCC 2 cut(s) 73, 165
CviAII CATG 4 cut(s) 65, 86, 229, 500
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 582
DpnII GATC 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 442
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 4 cut(s) 68, 89, 232, 503
FaqI GGGAC 1 cut(s) 300
FatI CATG 4 cut(s) 64, 85, 228, 499
FauI CCCGC 1 cut(s) 325
FbaI TGATCA 1 cut(s) 580
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 594, 615, 648
FokI GGATG 6 cut(s) 76, 208, 262, 413, 425, 461
Fsp4HI GCNGC 3 cut(s) 594, 615, 648
FspBI CTAG 3 cut(s) 204, 567, 590
GluI GCNGC 3 cut(s) 594, 615, 648
HaeIII GGCC 2 cut(s) 74, 167
HapII CCGG 2 cut(s) 148, 163
Hin1II CATG 4 cut(s) 68, 89, 232, 503
HincII GTYRAC 2 cut(s) 364, 418
HindII GTYRAC 2 cut(s) 364, 418
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 2 cut(s) 289, 365
HpaII CCGG 2 cut(s) 148, 163
HphI GGTGA 4 cut(s) 15, 80, 302, 463
Hpy166II GTNNAC 2 cut(s) 364, 418
Hpy188I TCNGA 2 cut(s) 129, 461
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 364, 418
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 3 cut(s) 122, 314, 340
HpyCH4V TGCA 6 cut(s) 4, 89, 172, 180, 452, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 556, 644
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 4 cut(s) 68, 89, 232, 503
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 1 cut(s) 580
LmnI GCTCC 2 cut(s) 438, 591
LpnPI CCDG 8 cut(s) 161, 176, 279, 306, 359, 456, 545, 624
Lsp1109I GCAGC 2 cut(s) 580, 626
LweI GCATC 3 cut(s) 98, 230, 439
MaeI CTAG 3 cut(s) 204, 567, 590
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 582
MboI GATC 1 cut(s) 580
MboII GAAGA 3 cut(s) 245, 493, 541
MluCI AATT 1 cut(s) 630
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 8 cut(s) 53, 64, 270, 349, 379, 439, 501, 556
Mph1103I ATGCAT 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 3 cut(s) 351, 534, 668
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 2 cut(s) 148, 163
MspR9I CCNGG 3 cut(s) 149, 164, 294
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 2 cut(s) 281, 647
MwoI GCNNNNNNNGC 2 cut(s) 556, 644
NciI CCSGG 2 cut(s) 149, 164
NcoI CCATGG 1 cut(s) 64
NdeII GATC 1 cut(s) 580
NlaIII CATG 4 cut(s) 68, 89, 232, 503
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 1 cut(s) 89
NspV TTCGAA 1 cut(s) 527
PctI GAATGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 289
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 3 cut(s) 595, 616, 649
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PshBI ATTAAT 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspPI GGNCC 2 cut(s) 73, 165
RseI CAYNNNNRTG 1 cut(s) 189
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 3 cut(s) 351, 534, 668
SatI GCNGC 3 cut(s) 594, 615, 648
Sau3AI GATC 1 cut(s) 580
Sau96I GGNCC 2 cut(s) 73, 165
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 3 cut(s) 149, 164, 294
SfaNI GCATC 3 cut(s) 98, 230, 439
SfuI TTCGAA 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 1 cut(s) 630
SsiI CCGC 3 cut(s) 279, 318, 647
SspMI CTAG 3 cut(s) 204, 567, 590
StyD4I CCNGG 3 cut(s) 147, 162, 292
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 3 cut(s) 122, 314, 340
TaqI TCGA 3 cut(s) 264, 363, 527
TaqII GACCGA 1 cut(s) 94
TasI AATT 1 cut(s) 630
TauI GCSGC 1 cut(s) 650
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 3 cut(s) 351, 534, 668
Tru9I TTAA 3 cut(s) 351, 534, 668
TscAI CASTG 2 cut(s) 343, 607
TseI GCWGC 2 cut(s) 593, 614
TspDTI ATGAA 1 cut(s) 264
TspRI CASTG 2 cut(s) 343, 607
VspI ATTAAT 1 cut(s) 534
XagI CCTNNNNNAGG 1 cut(s) 297
XceI RCATGY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 3 cut(s) 204, 567, 590
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.