Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0018490

Physical Location & Seq

Genomic Coordinates Reverse (-)

42060854 .. 42062589

Gene Structure 1736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG235800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGGTTGTTCTGGAGAAGCAGAGTTATATGCTCATTGGTAGACATGATATCGAGCAATTGATGCAACTTGATCGTACAAGTGAATATTTACCAAATGCATTGGGCAGTCAAACATGGCAGTCAAAGATGTGGGACCTAAATTGTCTACATATATTCATTTCAAAGGATAACTTGATTCGTGATGACACCAAGCTTATATTGCTGGCTTCCCTCAGTGATTCATTGGAGTATGTTGCAGAATCTATTGAAAGTTTTTCCACTGGTTTCACCAGCGTGCATGGTGAGAGTCCGTCCGTGGAATATGAAAAGTTGAGAAATGAGTCACTAGAAAGTGAATTTGGACATGCTCTTGGAGCTAATCGCTCCAGAAGTCTTTCTACTACCTACCGTTATGGTCCATTTTTGGCTCTATATAGAGCAGCAATTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006887 GO:0006892 GO:0006893 GO:0006903 GO:0007154 GO:0007275 GO:0008037 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009791 GO:0009856 GO:0009875 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0022414 GO:0030054 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043230 GO:0044237 GO:0044249 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048316 GO:0048354 GO:0048359 GO:0048544 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0055044 GO:0060321 GO:0061458 GO:0070062 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec8_exocyst

Protein Analysis

144

Amino Acids

16.43

Weight (kDa)

5.03

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018490)

Species	Orthologous Gene IDs
malus_domestica	MD15G1044600.v1.1
rosa_chinensis	RchiOBHm_Chr4g0400831
rosa_laevigata	RLG00000022624
rosa_multiflora	Rmu_co8395409.1_g000001 Rmu_sc0002701.1_g000020
rosa_roxburghii	Rroxscaffold_1G00024720
rosa_rugosa	Rorug01G0183700 Rorug04G0090900 Rorug05G0207800
rosa_samantha	Rh6AG235800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	43, 148
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	165, 251
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AleI	CACNNNNGTG	1 cut(s)	275
AluBI	AGCT	2 cut(s)	196, 359
AluI	AGCT	2 cut(s)	196, 359
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	136, 398
AsuHPI	GGTGA	2 cut(s)	262, 296
AvaII	GGWCC	2 cut(s)	136, 398
BarI	GAAGNNNNNNTAC	2 cut(s)	364, 396
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BfaI	CTAG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme18I	GGWCC	2 cut(s)	136, 398
BmgT120I	GGNCC	2 cut(s)	136, 398
BmiI	GGNNCC	1 cut(s)	137
BmsI	GCATC	1 cut(s)	54
BpmI	CTGGAG	2 cut(s)	35, 352
BsaJI	CCNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	207, 278
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	297
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 202, 356
BstNSI	RCATGY	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	223, 261
Cac8I	GCNNGC	2 cut(s)	207, 278
Cfr13I	GGNCC	2 cut(s)	136, 398
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	4 cut(s)	47, 117, 281, 347
CviJI	RGCY	4 cut(s)	196, 209, 359, 410
CviKI_1	RGCY	4 cut(s)	196, 209, 359, 410
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	136, 398
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	103
FaeI	CATG	4 cut(s)	50, 120, 284, 350
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	4 cut(s)	46, 116, 280, 346
FblI	GTMKAC	2 cut(s)	43, 148
Fnu4HI	GCNGC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	1 cut(s)	423
GsuI	CTGGAG	2 cut(s)	35, 352
Hin1II	CATG	4 cut(s)	50, 120, 284, 350
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	5 cut(s)	178, 221, 242, 289, 323
HphI	GGTGA	2 cut(s)	262, 296
Hpy166II	GTNNAC	2 cut(s)	44, 149
Hpy188III	TCNNGA	3 cut(s)	14, 182, 369
Hpy8I	GTNNAC	2 cut(s)	44, 149
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	4 cut(s)	67, 101, 239, 280
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 202, 356
HpyF3I	CTNAG	1 cut(s)	215
Hsp92II	CATG	4 cut(s)	50, 120, 284, 350
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	356, 371
LpnPI	CCDG	4 cut(s)	191, 249, 286, 382
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MfeI	CAATTG	1 cut(s)	59
MluCI	AATT	4 cut(s)	59, 142, 338, 426
MlyI	GAGTC	2 cut(s)	298, 332
MnlI	CCTC	1 cut(s)	224
Mph1103I	ATGCAT	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	376
MslI	CAYNNNNRTG	1 cut(s)	275
MunI	CAATTG	1 cut(s)	59
MwoI	GCNNNNNNNGC	3 cut(s)	64, 202, 356
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	4 cut(s)	50, 120, 284, 350
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	324
NsiI	ATGCAT	1 cut(s)	103
NspI	RCATGY	1 cut(s)	350
OliI	CACNNNNGTG	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	178, 221, 242
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	2 cut(s)	297, 331
PpsI	GAGTC	2 cut(s)	297, 331
PpuMI	RGGWCCY	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	136, 398
PspPPI	RGGWCCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	2 cut(s)	136, 398
SchI	GAGTC	2 cut(s)	298, 332
SetI	ASST	5 cut(s)	9, 141, 198, 361, 389
SfaNI	GCATC	1 cut(s)	54
SinI	GGWCC	2 cut(s)	136, 398
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	4 cut(s)	59, 142, 338, 426
SspI	AATATT	1 cut(s)	89
SspMI	CTAG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	54
TasI	AATT	4 cut(s)	59, 142, 338, 426
TfiI	GAWTC	3 cut(s)	178, 221, 242
TscAI	CASTG	2 cut(s)	223, 268
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	3 cut(s)	148, 213, 321
TspGWI	ACGGA	2 cut(s)	282, 286
TspRI	CASTG	2 cut(s)	223, 268
VpaK11BI	GGWCC	2 cut(s)	136, 398
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	1 cut(s)	350
XmiI	GTMKAC	2 cut(s)	43, 148
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.