Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002350

Physical Location & Seq

Genomic Coordinates Reverse (-)

25356506 .. 25360202

Gene Structure 3697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0183700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCGGACAACCTGGAGGAGCTCCGAGTACTTACTCGCCGTCCCCCACGACCCGGAAAACCAAGTCACTCATCTTCCGAAACGACGACGTCGATTGGGTCCGAACCGATGGCCGTGAATTCCACCAATGCAGACCTGCATTTTTCAAGACTGGTGCTGTAAACGCTGCTGCAGGATCAGCATATGCAGAATTTGGAAATACCAAGGTCATTGTTTCTGTATTTGGTCCAAGAGAGAGTAAAAAGGCAATGATGTACAGTGATATAGGGCGGTTGAATTGCAATGTCAGCTATACAACTTTTGCCACTCCAGCTCGTGGACAGGGGTCAGACCACAAAGAGTTTTCTTCAATGCTTCATAAAGCTTTGGAGGGTGCAATAATATTGGAAACTTTCCCCAAGACTACTGTGGATGTTTTTGCATTGGTATTGGAATCTGGGGGCAGTGATCTTCCTGTAGTAATATCATGTGCTAGTCTTGCCCTAGCAGATGCAGGGATAATGATGTATGACCTTGTCGCCTCAGTCTCTGTGTCTTGTCTTGGAAAGAACCTAGTCATTGATCCTGTTTTGGAGGAAGAAAGTTACCAAGATGGAAGCTTAATGCTTGCTTGCATGCCTTCTCGCTATGAAGTCACTCAGCTAACTATAACGGGGGAATGGTCAACCCCAAAAATTAATGAGGTTGATATGCTTGTCAAAGTTGCATGCTTGGTATATGCTAAAGTCCCACTGGAAGTTTATTTGATGGTGGCAAGTTTATCATATGATCTGAGAAAGTTGGATGTGGGCTCACAATACCAAAATGGTTTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0019774 GO:0022626 GO:0032991 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

272

Amino Acids

29.49

Weight (kDa)

5.3

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	43 - 167	5.1e-31	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	171 - 219	2.5e-06	3' exoribonuclease family, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56450
fragaria_vesca	FvH4_3g33020 FvH4_3g33020 FvH4_7g08240 FvH4_7g09770
malus_domestica	MD02G1138100.v1.1 MD03G1112600.v1.1 MD11G1131600.v1.1 MD15G1251900.v1.1
prunus_persica	Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1
pyrus_communis	pycom02g10950 pycom11g10870
rosa_chinensis	RchiOBHm_Chr1g0346771 RchiOBHm_Chr5g0060341
rosa_laevigata	RLG00000028779 RLG00000035357
rosa_multiflora	Rmu_sc0003232.1_g000008 Rmu_sc0003232.1_g000009 Rmu_sc0009369.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020450 Rroxscaffold_4G00308430
rosa_rugosa	Rorug01G0182900 Rorug01G0183700 Rorug05G0328900
rosa_samantha	Rh1BG167500 Rh1CG186000 Rh1DG198300 Rh5AG393700 Rh5BG406300 Rh5CG430100 Rh5DG007900 Rh5DG421000
rosa_wichuraiana	Rw1G016880 Rw5G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	317
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	2 cut(s)	184, 557
AcoI	YGGCCR	2 cut(s)	3, 112
AcsI	RAATTY	2 cut(s)	119, 191
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	2 cut(s)	31, 257
AfiI	CCNNNNNNNGG	2 cut(s)	54, 317
AgsI	TTSAA	3 cut(s)	148, 277, 351
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	6 cut(s)	23, 291, 314, 365, 600, 643
AluI	AGCT	6 cut(s)	23, 291, 314, 365, 600, 643
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	2 cut(s)	184, 557
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	2 cut(s)	3, 112
ApeKI	GCWGC	2 cut(s)	167, 170
ApoI	RAATTY	2 cut(s)	119, 191
AseI	ATTAAT	1 cut(s)	678
AspS9I	GGNCC	2 cut(s)	100, 227
AsuC2I	CCSGG	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	100, 227
BanII	GRGCYC	2 cut(s)	25, 794
BauI	CACGAG	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	154, 157
BccI	CCATC	3 cut(s)	104, 587, 742
BceAI	ACGGC	2 cut(s)	25, 99
BciT130I	CCWGG	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	3 cut(s)	474, 485, 554
BfmI	CTRYAG	2 cut(s)	171, 456
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	2 cut(s)	168, 171
BlsI	GCNGC	2 cut(s)	169, 172
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	15, 55
Bme18I	GGWCC	2 cut(s)	100, 227
BmgT120I	GGNCC	2 cut(s)	100, 227
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	2 cut(s)	15, 55
BmsI	GCATC	1 cut(s)	481
BoxI	GACNNNNGTC	1 cut(s)	325
BpmI	CTGGAG	2 cut(s)	36, 294
BpuMI	CCSGG	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 317
Bse1I	ACTGG	2 cut(s)	157, 738
Bse3DI	GCAATG	2 cut(s)	255, 289
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	418, 790
BseLI	CCNNNNNNNGG	2 cut(s)	54, 317
BseMI	GCAATG	2 cut(s)	255, 289
BseMII	CTCAG	3 cut(s)	537, 653, 764
BseNI	ACTGG	2 cut(s)	157, 738
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	154, 157
BshFI	GGCC	2 cut(s)	5, 114
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	6, 55
BslFI	GGGAC	2 cut(s)	28, 713
BslI	CCNNNNNNNGG	2 cut(s)	54, 317
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	2 cut(s)	28, 713
BsnI	GGCC	2 cut(s)	5, 114
Bsp1286I	GDGCHC	2 cut(s)	25, 794
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	176, 448, 562, 769
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	2 cut(s)	5, 114
BspCNI	CTCAG	3 cut(s)	536, 652, 765
BspLI	GGNNCC	1 cut(s)	101
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	184, 557
BsrDI	GCAATG	2 cut(s)	255, 289
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	157, 738
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	4 cut(s)	176, 448, 562, 769
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	260, 409
BstACI	GRCGYC	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	609, 613, 617, 709
BstDEI	CTNAG	3 cut(s)	523, 639, 773
BstF5I	GGATG	2 cut(s)	418, 790
BstKTI	GATC	4 cut(s)	179, 451, 565, 772
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	4 cut(s)	176, 448, 562, 769
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 179, 288, 311, 479
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	2 cut(s)	619, 711
BstPAI	GACNNNNGTC	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	13, 53
BstSFI	CTRYAG	2 cut(s)	171, 456
BstV1I	GCAGC	2 cut(s)	154, 157
BsuRI	GGCC	2 cut(s)	5, 114
BtsCI	GGATG	2 cut(s)	418, 790
BtsI	GCAGTG	1 cut(s)	451
BtsIMutI	CAGTG	3 cut(s)	265, 451, 731
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	4 cut(s)	609, 613, 617, 709
CaiI	CAGNNNCTG	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	100, 227
Csp6I	GTAC	2 cut(s)	30, 256
CviAII	CATG	3 cut(s)	468, 616, 708
CviJI	RGCY	9 cut(s)	5, 23, 114, 291, 314, 365, 600, 643, 792
CviKI_1	RGCY	9 cut(s)	5, 23, 114, 291, 314, 365, 600, 643, 792
CviQI	GTAC	2 cut(s)	30, 256
DdeI	CTNAG	3 cut(s)	523, 639, 773
DpnI	GATC	4 cut(s)	178, 450, 564, 771
DpnII	GATC	4 cut(s)	176, 448, 562, 769
EaeI	YGGCCR	2 cut(s)	3, 112
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	2 cut(s)	25, 794
Eco47I	GGWCC	2 cut(s)	100, 227
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	2 cut(s)	25, 794
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	471, 619, 711
FaqI	GGGAC	2 cut(s)	28, 713
FatI	CATG	3 cut(s)	467, 615, 707
FauNDI	CATATG	2 cut(s)	184, 766
Fnu4HI	GCNGC	2 cut(s)	168, 171
FokI	GGATG	2 cut(s)	425, 797
FriOI	GRGCYC	2 cut(s)	25, 794
Fsp4HI	GCNGC	2 cut(s)	168, 171
FspBI	CTAG	3 cut(s)	474, 485, 554
GluI	GCNGC	2 cut(s)	168, 171
GsuI	CTGGAG	2 cut(s)	36, 294
HaeIII	GGCC	2 cut(s)	5, 114
HapII	CCGG	2 cut(s)	6, 55
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	471, 619, 711
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HindIII	AAGCTT	2 cut(s)	363, 598
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	2 cut(s)	6, 55
Hpy166II	GTNNAC	3 cut(s)	163, 320, 666
Hpy188I	TCNGA	5 cut(s)	27, 80, 104, 331, 774
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	3 cut(s)	163, 320, 666
Hpy99I	CGWCG	3 cut(s)	89, 92, 95
HpyAV	CCTTC	1 cut(s)	630
HpyCH4III	ACNGT	2 cut(s)	260, 409
HpyCH4IV	ACGT	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 179, 288, 311, 479
HpyF3I	CTNAG	3 cut(s)	523, 639, 773
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	471, 619, 711
Kzo9I	GATC	4 cut(s)	176, 448, 562, 769
LmnI	GCTCC	2 cut(s)	20, 28
Lsp1109I	GCAGC	2 cut(s)	154, 157
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	3 cut(s)	474, 485, 554
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	66, 584, 634
MalI	GATC	4 cut(s)	178, 450, 564, 771
MboI	GATC	4 cut(s)	176, 448, 562, 769
MboII	GAAGA	4 cut(s)	67, 339, 443, 590
MhlI	GDGCHC	2 cut(s)	25, 794
MluCI	AATT	4 cut(s)	119, 191, 277, 675
MmeI	TCCRAC	1 cut(s)	762
MnlI	CCTC	5 cut(s)	11, 364, 532, 568, 676
MseI	TTAA	2 cut(s)	602, 678
MspI	CCGG	2 cut(s)	6, 55
MspR9I	CCNGG	2 cut(s)	15, 55
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	5 cut(s)	164, 179, 288, 311, 479
NciI	CCSGG	1 cut(s)	55
NdeI	CATATG	2 cut(s)	184, 766
NdeII	GATC	4 cut(s)	176, 448, 562, 769
NlaIII	CATG	3 cut(s)	471, 619, 711
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	2 cut(s)	66, 634
NspI	RCATGY	2 cut(s)	619, 711
PaeI	GCATGC	2 cut(s)	619, 711
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	434
PflFI	GACNNNGTC	2 cut(s)	89, 515
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	169, 172
PshAI	GACNNNNGTC	1 cut(s)	325
PshBI	ATTAAT	1 cut(s)	678
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	2 cut(s)	100, 227
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	530
PsyI	GACNNNGTC	2 cut(s)	89, 515
RsaI	GTAC	2 cut(s)	31, 257
RsaNI	GTAC	2 cut(s)	30, 256
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	602, 678
SatI	GCNGC	2 cut(s)	168, 171
Sau3AI	GATC	4 cut(s)	176, 448, 562, 769
Sau96I	GGNCC	2 cut(s)	100, 227
ScaI	AGTACT	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	15, 55
SduI	GDGCHC	2 cut(s)	25, 794
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	2 cut(s)	171, 456
SinI	GGWCC	2 cut(s)	100, 227
SphI	GCATGC	2 cut(s)	619, 711
Sse9I	AATT	4 cut(s)	119, 191, 277, 675
SsiI	CCGC	1 cut(s)	271
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	3 cut(s)	474, 485, 554
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	13, 53
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	260, 409
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	93
TasI	AATT	4 cut(s)	119, 191, 277, 675
TatI	WGTACW	2 cut(s)	29, 255
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	2 cut(s)	602, 678
Tru9I	TTAA	2 cut(s)	602, 678
TscAI	CASTG	3 cut(s)	265, 451, 738
TseFI	GTSAC	2 cut(s)	66, 634
TseI	GCWGC	2 cut(s)	167, 170
Tsp45I	GTSAC	2 cut(s)	66, 634
TspDTI	ATGAA	2 cut(s)	347, 645
TspRI	CASTG	3 cut(s)	265, 451, 738
Tth111I	GACNNNGTC	2 cut(s)	89, 515
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	100, 227
VspI	ATTAAT	1 cut(s)	678
XapI	RAATTY	2 cut(s)	119, 191
XceI	RCATGY	2 cut(s)	619, 711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	3 cut(s)	474, 485, 554
ZraI	GACGTC	1 cut(s)	91
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.