Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002350

Physical Location & Seq

Genomic Coordinates Reverse (-)

11571978 .. 11574921

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1138100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGCTTTCCAAACCTTAAAACTGATTCGGATTGCAATTTCTTGAGCGAAAAGAAAATTAAAATTTTTATTTGTACCCTCTCTTTTTTTGTTCTTTTTTTTTTCTGGCCAGAAACTCATTCAAAATTACGAAAGAAGCCCACATCACAGGCCGGAGCAAAACACAAGAGAACGGAGGTGCTGGAAACTAAAAGCTGCGATTTCAAGCTCTACGAAAACAAAAACGAGTGTAAGTTTCGATTAATGGAGTCGAACCAATCCAAACCCGGCCTACTGTGCAATCCTGAAGGCTCGCAGAGGACCCTGTACCCATATGTAACTGGTACATCTGTTGTGGCTCTCAAGTATAAAGATGGAATTTTGATGGCTGCTGATATGGGAGGTTCTTATGGCTCTACCCTGCGATACAAGAGTGTGGAAAGAATGAAGCCAATCGGAAAGCATTCTCTTCTTGGTGCAAGTGGAGAAATAAGCGACTTTCAGGAGCTCTTACGTTATCTTGATGAACTCGTCCTGTATGACAACATGTGGGATGATGGGAACTCTTTGGGACCTAAAGAGGTGCACAACTATTTGACCCGTGTGATGTACAATAGGCGTAACAAGTTCAATCCATTGTGGAACTCTCTTGTCCTCGGTGGAGTGAAAAATGGACAGAAGTACCTTGGCATGGTTAGCATGATAGGTGTAAATTTTGAGGACAATCATGTGGCTACGGGATTTGGAAATCACCTTGCACGGCCTATTCTTCGTGATGAGTGGCATGAGAACTTGACTTTCGAAGAGGCTGTAAAGCTGCTGGAGAAGTGCATGCGTGTCCTTCTCTATCGAGATCGGTCTGCTGTGAACAAGCTTCAGATAGCTAAAATCACCGAAGAAGGCGTAACAATTTCTCAGCCCTACTCTTTGAAGACATTCTGGGGTTTCTCTGCGTTCGAGAATCCAACATTGGGCGCTGAAGGATCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

324

Amino Acids

36.91

Weight (kDa)

8.93

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	107 - 290	5.1e-33	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56450
fragaria_vesca	FvH4_3g33020 FvH4_3g33020 FvH4_7g08240 FvH4_7g09770
malus_domestica	MD02G1138100.v1.1 MD03G1112600.v1.1 MD11G1131600.v1.1 MD15G1251900.v1.1
prunus_persica	Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1
pyrus_communis	pycom02g10950 pycom11g10870
rosa_chinensis	RchiOBHm_Chr1g0346771 RchiOBHm_Chr5g0060341
rosa_laevigata	RLG00000028779 RLG00000035357
rosa_multiflora	Rmu_sc0003232.1_g000008 Rmu_sc0003232.1_g000009 Rmu_sc0009369.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020450 Rroxscaffold_4G00308430
rosa_rugosa	Rorug01G0182900 Rorug01G0183700 Rorug05G0328900
rosa_samantha	Rh1BG167500 Rh1CG186000 Rh1DG198300 Rh5AG393700 Rh5BG406300 Rh5CG430100 Rh5DG007900 Rh5DG421000
rosa_wichuraiana	Rw1G016880 Rw5G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	970
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	3 cut(s)	63, 357, 691
AcuI	CTGAAG	2 cut(s)	306, 839
AfaI	GTAC	5 cut(s)	76, 308, 325, 590, 662
AfiI	CCNNNNNNNGG	2 cut(s)	670, 950
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	4 cut(s)	123, 205, 610, 910
AjuI	GAANNNNNNNTTGG	2 cut(s)	932, 964
AluBI	AGCT	6 cut(s)	195, 208, 487, 796, 853, 863
AluI	AGCT	6 cut(s)	195, 208, 487, 796, 853, 863
Alw21I	GWGCWC	2 cut(s)	489, 567
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	970
AoxI	GGCC	4 cut(s)	107, 150, 268, 740
ApaLI	GTGCAC	1 cut(s)	563
ApeKI	GCWGC	3 cut(s)	195, 368, 796
ApoI	RAATTY	3 cut(s)	63, 357, 691
AseI	ATTAAT	1 cut(s)	242
Asp700I	GAANNNNTTC	2 cut(s)	442, 914
AspLEI	GCGC	1 cut(s)	956
AspS9I	GGNCC	2 cut(s)	300, 551
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	2 cut(s)	722, 862
AsuII	TTCGAA	1 cut(s)	780
AvaII	GGWCC	2 cut(s)	300, 551
BaeGI	GKGCMC	1 cut(s)	567
BaeI	ACNNNNGTAYC	6 cut(s)	315, 348, 397, 430, 644, 677
BalI	TGGCCA	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	917
Bbv12I	GWGCWC	2 cut(s)	489, 567
BbvI	GCAGC	3 cut(s)	182, 355, 783
BccI	CCATC	3 cut(s)	347, 358, 530
BceAI	ACGGC	1 cut(s)	755
BcnI	CCSGG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	957
BisI	GCNGC	3 cut(s)	196, 369, 797
BlsI	GCNGC	3 cut(s)	197, 370, 798
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	2 cut(s)	300, 551
BmgT120I	GGNCC	2 cut(s)	300, 551
BmiI	GGNNCC	2 cut(s)	302, 552
BmrFI	CCNGG	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	917
BpmI	CTGGAG	1 cut(s)	821
Bpu14I	TTCGAA	1 cut(s)	780
BpuEI	CTTGAG	2 cut(s)	64, 326
BpuMI	CCSGG	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	2 cut(s)	670, 950
Bse1I	ACTGG	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	634, 664
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	670, 950
BseMII	CTCAG	1 cut(s)	908
BseNI	ACTGG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	3 cut(s)	182, 355, 783
BshFI	GGCC	4 cut(s)	109, 152, 270, 742
BsiHKAI	GWGCWC	2 cut(s)	489, 567
BsiSI	CCGG	2 cut(s)	153, 267
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	670, 950
BsmFI	GGGAC	1 cut(s)	564
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	109, 152, 270, 742
Bsp119I	TTCGAA	1 cut(s)	780
Bsp1286I	GDGCHC	2 cut(s)	489, 567
Bsp1407I	TGTACA	1 cut(s)	588
Bsp143I	GATC	2 cut(s)	832, 962
BspANI	GGCC	4 cut(s)	109, 152, 270, 742
BspCNI	CTCAG	1 cut(s)	907
BspLI	GGNNCC	2 cut(s)	302, 552
BspPI	GGATC	1 cut(s)	970
BspT104I	TTCGAA	1 cut(s)	780
BsrGI	TGTACA	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	634, 664
BssMI	GATC	2 cut(s)	832, 962
BssT1I	CCWWGG	1 cut(s)	664
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	2 cut(s)	453, 777
BstAUI	TGTACA	1 cut(s)	588
BstBI	TTCGAA	1 cut(s)	780
BstC8I	GCNNGC	2 cut(s)	293, 812
BstDEI	CTNAG	1 cut(s)	894
BstF5I	GGATG	1 cut(s)	538
BstH2I	RGCGCY	1 cut(s)	957
BstHHI	GCGC	1 cut(s)	956
BstKTI	GATC	2 cut(s)	835, 965
BstMBI	GATC	2 cut(s)	832, 962
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 675
BstNSI	RCATGY	2 cut(s)	529, 814
BstSCI	CCNGG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	3 cut(s)	182, 355, 783
BstV2I	GAAGAC	1 cut(s)	917
BsuRI	GGCC	4 cut(s)	109, 152, 270, 742
BtsCI	GGATG	1 cut(s)	538
Cac8I	GCNNGC	2 cut(s)	293, 812
CfoI	GCGC	1 cut(s)	956
Cfr13I	GGNCC	2 cut(s)	300, 551
Csp6I	GTAC	5 cut(s)	75, 307, 324, 589, 661
CviAII	CATG	7 cut(s)	526, 670, 679, 707, 764, 811, 966
CviQI	GTAC	5 cut(s)	75, 307, 324, 589, 661
DdeI	CTNAG	1 cut(s)	894
DpnI	GATC	2 cut(s)	834, 964
DpnII	GATC	2 cut(s)	832, 962
EaeI	YGGCCR	1 cut(s)	107
Eam1104I	CTCTTC	2 cut(s)	453, 777
EarI	CTCTTC	2 cut(s)	453, 777
Ecl136II	GAGCTC	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	664
Eco24I	GRGCYC	1 cut(s)	489
Eco47I	GGWCC	2 cut(s)	300, 551
Eco53kI	GAGCTC	1 cut(s)	487
Eco57I	CTGAAG	2 cut(s)	306, 839
EcoICRI	GAGCTC	1 cut(s)	487
EcoO109I	RGGNCCY	2 cut(s)	300, 551
EcoT14I	CCWWGG	1 cut(s)	664
EcoT38I	GRGCYC	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	7 cut(s)	529, 673, 682, 710, 767, 814, 969
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	7 cut(s)	525, 669, 678, 706, 763, 810, 965
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	196, 369, 797
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	3 cut(s)	196, 369, 797
GlaI	GCGC	1 cut(s)	955
GluI	GCNGC	3 cut(s)	196, 369, 797
GsuI	CTGGAG	1 cut(s)	821
HaeII	RGCGCY	1 cut(s)	957
HaeIII	GGCC	4 cut(s)	109, 152, 270, 742
HapII	CCGG	2 cut(s)	153, 267
HhaI	GCGC	1 cut(s)	956
Hin1II	CATG	7 cut(s)	529, 673, 682, 710, 767, 814, 969
Hin6I	GCGC	1 cut(s)	954
HinP1I	GCGC	1 cut(s)	954
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	3 cut(s)	26, 248, 940
HpaII	CCGG	2 cut(s)	153, 267
HphI	GGTGA	2 cut(s)	722, 862
Hpy166II	GTNNAC	2 cut(s)	565, 847
Hpy188I	TCNGA	3 cut(s)	31, 437, 858
Hpy188III	TCNNGA	7 cut(s)	43, 284, 482, 500, 752, 830, 937
Hpy8I	GTNNAC	2 cut(s)	565, 847
HpyAV	CCTTC	4 cut(s)	281, 830, 872, 953
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	6 cut(s)	36, 279, 458, 565, 737, 810
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 675
HpyF3I	CTNAG	1 cut(s)	894
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	7 cut(s)	529, 673, 682, 710, 767, 814, 969
HspAI	GCGC	1 cut(s)	954
Kzo9I	GATC	2 cut(s)	832, 962
LmnI	GCTCC	2 cut(s)	155, 484
Lsp1109I	GCAGC	3 cut(s)	182, 355, 783
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	3 cut(s)	316, 599, 883
MalI	GATC	2 cut(s)	834, 964
MboI	GATC	2 cut(s)	832, 962
MboII	GAAGA	5 cut(s)	440, 740, 794, 887, 922
MhlI	GDGCHC	2 cut(s)	489, 567
MlsI	TGGCCA	1 cut(s)	109
MluCI	AATT	7 cut(s)	37, 57, 63, 125, 357, 691, 888
MluNI	TGGCCA	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	968
MnlI	CCTC	8 cut(s)	89, 169, 291, 374, 553, 644, 691, 778
Mox20I	TGGCCA	1 cut(s)	109
MroXI	GAANNNNTTC	2 cut(s)	442, 914
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	3 cut(s)	18, 60, 242
Msp20I	TGGCCA	1 cut(s)	109
MspI	CCGG	2 cut(s)	153, 267
MspR9I	CCNGG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	442
MwoI	GCNNNNNNNGC	2 cut(s)	276, 675
NciI	CCSGG	1 cut(s)	267
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	2 cut(s)	832, 962
NlaIII	CATG	7 cut(s)	529, 673, 682, 710, 767, 814, 969
NlaIV	GGNNCC	2 cut(s)	302, 552
NspI	RCATGY	2 cut(s)	529, 814
NspV	TTCGAA	1 cut(s)	780
PaeI	GCATGC	1 cut(s)	814
PciI	ACATGT	1 cut(s)	525
PctI	GAATGC	1 cut(s)	442
PdmI	GAANNNNTTC	2 cut(s)	442, 914
PfeI	GAWTC	2 cut(s)	26, 940
PkrI	GCNGC	3 cut(s)	197, 370, 798
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	2 cut(s)	300, 551
PscI	ACATGT	1 cut(s)	525
PshBI	ATTAAT	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	489
Psp5II	RGGWCCY	2 cut(s)	300, 551
PspN4I	GGNNCC	2 cut(s)	302, 552
PspPI	GGNCC	2 cut(s)	300, 551
PspPPI	RGGWCCY	2 cut(s)	300, 551
RsaI	GTAC	5 cut(s)	76, 308, 325, 590, 662
RsaNI	GTAC	5 cut(s)	75, 307, 324, 589, 661
SacI	GAGCTC	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	18, 60, 242
SatI	GCNGC	3 cut(s)	196, 369, 797
Sau3AI	GATC	2 cut(s)	832, 962
Sau96I	GGNCC	2 cut(s)	300, 551
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	2 cut(s)	489, 567
SfuI	TTCGAA	1 cut(s)	780
SinI	GGWCC	2 cut(s)	300, 551
SmlI	CTYRAG	2 cut(s)	43, 341
SmoI	CTYRAG	2 cut(s)	43, 341
SphI	GCATGC	1 cut(s)	814
Sse9I	AATT	7 cut(s)	37, 57, 63, 125, 357, 691, 888
SstI	GAGCTC	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	5 cut(s)	238, 251, 780, 829, 936
TaqII	GACCGA	1 cut(s)	825
TasI	AATT	7 cut(s)	37, 57, 63, 125, 357, 691, 888
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	2 cut(s)	26, 940
Tru1I	TTAA	3 cut(s)	18, 60, 242
Tru9I	TTAA	3 cut(s)	18, 60, 242
TseI	GCWGC	3 cut(s)	195, 368, 796
TspDTI	ATGAA	2 cut(s)	440, 519
TspGWI	ACGGA	1 cut(s)	188
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	300, 551
VspI	ATTAAT	1 cut(s)	242
XapI	RAATTY	3 cut(s)	63, 357, 691
XceI	RCATGY	2 cut(s)	529, 814
XmnI	GAANNNNTTC	2 cut(s)	442, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.