Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002350

Physical Location & Seq

Genomic Coordinates Reverse (-)

24314699 .. 24318236

Gene Structure 3538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G283100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGTCGAACCAAGCCAAACCCGGCCTACTGTGCAACCCTGAAGCCTCTCAGAGAACGCTGTACCCATATGTAACTGGTACATCTGTGGTGGCTTTGAAATACAAAGATGGAATTTTGATGGCTGCTGATATGGGAGGTTCTTATGGGTCTACCTTGCGATACAAGAGTGTGGAACGAATGAAGCCTATTGGAAAGCATTCTCTTCTTGGTGCAAGTGGAGAAATAAGTGACTTTCAAGAGCTATTACGTTATCTTGATGAGCTCATCCTATATGACAACATGTGGGATGATGGCAACTCTTTGGGACCTAAAGAGGTCCACAACTATTTGACCCGGGTGATGTACAATAGGCGTAACAAGTTCAATCCGCTGTGGAACTCTCTTGTCCTTGGTGGAGTGAAAAAAGGACAGAAGTACCTTGGCATGGTTAGCATGATAGGTGTAAATTTTGAGGACAATCATGTAGCTACAGGATTTGGAAATCACCTTGCACGGCCTATTCTTCGTGATGAATGGCATGAGAACTTGACTTTTGAAGAGGGTGTAAAGCTACTGGAGAAATGCATGCGTGTCCTCCTCTATCGTGATCGGTCTGCTGTCAACAAGCTTCAGATTTCCAAAATCACTGAAGAAGGTGTAACCATCTCTCAGCCCTACTCTTTGAAGACTTTCTGGGGTTTCTCTGCTTTTGAAAATCCAACATTGGGTGCTGAAGGATCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

243

Amino Acids

27.34

Weight (kDa)

7.73

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56450
fragaria_vesca	FvH4_3g33020 FvH4_3g33020 FvH4_7g08240 FvH4_7g09770
malus_domestica	MD02G1138100.v1.1 MD03G1112600.v1.1 MD11G1131600.v1.1 MD15G1251900.v1.1
prunus_persica	Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1
pyrus_communis	pycom02g10950 pycom11g10870
rosa_chinensis	RchiOBHm_Chr1g0346771 RchiOBHm_Chr5g0060341
rosa_laevigata	RLG00000028779 RLG00000035357
rosa_multiflora	Rmu_sc0003232.1_g000008 Rmu_sc0003232.1_g000009 Rmu_sc0009369.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020450 Rroxscaffold_4G00308430
rosa_rugosa	Rorug01G0182900 Rorug01G0183700 Rorug05G0328900
rosa_samantha	Rh1BG167500 Rh1CG186000 Rh1DG198300 Rh5AG393700 Rh5BG406300 Rh5CG430100 Rh5DG007900 Rh5DG421000
rosa_wichuraiana	Rw1G016880 Rw5G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	727
AcsI	RAATTY	2 cut(s)	114, 448
AcuI	CTGAAG	3 cut(s)	63, 596, 651
AfaI	GTAC	4 cut(s)	65, 82, 347, 419
AfiI	CCNNNNNNNGG	2 cut(s)	427, 707
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	6 cut(s)	100, 239, 367, 539, 667, 695
AluBI	AGCT	5 cut(s)	244, 265, 470, 553, 610
AluI	AGCT	5 cut(s)	244, 265, 470, 553, 610
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	727
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	25, 497
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	114, 448
Asp700I	GAANNNNTTC	2 cut(s)	199, 671
AspS9I	GGNCC	2 cut(s)	308, 319
AsuC2I	CCSGG	3 cut(s)	24, 337, 338
AsuHPI	GGTGA	2 cut(s)	352, 479
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	308, 319
BaeI	ACNNNNGTAYC	6 cut(s)	72, 105, 154, 187, 401, 434
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	674
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	4 cut(s)	104, 115, 287, 653
BceAI	ACGGC	1 cut(s)	512
BcnI	CCSGG	3 cut(s)	24, 337, 338
BfmI	CTRYAG	1 cut(s)	471
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	3 cut(s)	24, 337, 338
Bme18I	GGWCC	2 cut(s)	308, 319
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	308, 319
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	3 cut(s)	24, 337, 338
BpiI	GAAGAC	1 cut(s)	674
BpmI	CTGGAG	1 cut(s)	578
BpuMI	CCSGG	3 cut(s)	24, 337, 338
BsaJI	CCNNGG	3 cut(s)	336, 391, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	427, 707
Bse1I	ACTGG	2 cut(s)	82, 561
BseDI	CCNNGG	3 cut(s)	336, 391, 421
BseGI	GGATG	2 cut(s)	267, 295
BseLI	CCNNNNNNNGG	2 cut(s)	427, 707
BseMII	CTCAG	2 cut(s)	65, 665
BseNI	ACTGG	2 cut(s)	82, 561
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	2 cut(s)	27, 499
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	24, 337
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	427, 707
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	27, 499
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	589, 719
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	2 cut(s)	27, 499
BspCNI	CTCAG	2 cut(s)	64, 664
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	727
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	82, 561
BssECI	CCNNGG	3 cut(s)	336, 391, 421
BssMI	GATC	2 cut(s)	589, 719
BssT1I	CCWWGG	2 cut(s)	391, 421
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	2 cut(s)	210, 534
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	2 cut(s)	51, 651
BstF5I	GGATG	2 cut(s)	267, 295
BstKTI	GATC	2 cut(s)	592, 722
BstMBI	GATC	2 cut(s)	589, 719
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 432
BstNSI	RCATGY	2 cut(s)	286, 571
BstSCI	CCNGG	3 cut(s)	22, 335, 336
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	674
BsuRI	GGCC	2 cut(s)	27, 499
BtsCI	GGATG	2 cut(s)	267, 295
BtsIMutI	CAGTG	1 cut(s)	627
Cac8I	GCNNGC	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	308, 319
Cfr9I	CCCGGG	1 cut(s)	336
Csp6I	GTAC	4 cut(s)	64, 81, 346, 418
CviAII	CATG	7 cut(s)	283, 427, 436, 464, 521, 568, 723
CviQI	GTAC	4 cut(s)	64, 81, 346, 418
DdeI	CTNAG	2 cut(s)	51, 651
DpnI	GATC	2 cut(s)	591, 721
DpnII	GATC	2 cut(s)	589, 719
Eam1104I	CTCTTC	2 cut(s)	210, 534
EarI	CTCTTC	2 cut(s)	210, 534
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	391, 421
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	2 cut(s)	308, 319
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	3 cut(s)	63, 596, 651
Eco88I	CYCGRG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	308
EcoT14I	CCWWGG	2 cut(s)	391, 421
EcoT22I	ATGCAT	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	391, 421
FaeI	CATG	7 cut(s)	286, 430, 439, 467, 524, 571, 726
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	7 cut(s)	282, 426, 435, 463, 520, 567, 722
FauNDI	CATATG	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	254, 302
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	2 cut(s)	27, 499
HapII	CCGG	2 cut(s)	24, 337
Hin1II	CATG	7 cut(s)	286, 430, 439, 467, 524, 571, 726
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	24, 337
HphI	GGTGA	2 cut(s)	352, 479
Hpy166II	GTNNAC	3 cut(s)	153, 322, 604
Hpy188I	TCNGA	2 cut(s)	54, 615
Hpy188III	TCNNGA	4 cut(s)	239, 257, 509, 587
Hpy8I	GTNNAC	3 cut(s)	153, 322, 604
HpyAV	CCTTC	2 cut(s)	629, 710
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	4 cut(s)	36, 215, 494, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 432
HpyF3I	CTNAG	2 cut(s)	51, 651
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	7 cut(s)	286, 430, 439, 467, 524, 571, 726
Kzo9I	GATC	2 cut(s)	589, 719
LpnPI	CCDG	7 cut(s)	37, 54, 63, 350, 459, 542, 661
Lsp1109I	GCAGC	1 cut(s)	112
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	4 cut(s)	73, 230, 356, 640
MalI	GATC	2 cut(s)	591, 721
MboI	GATC	2 cut(s)	589, 719
MboII	GAAGA	5 cut(s)	197, 497, 551, 644, 679
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	2 cut(s)	114, 448
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	725
MnlI	CCTC	7 cut(s)	58, 131, 310, 448, 535, 587, 590
Mph1103I	ATGCAT	1 cut(s)	569
MroXI	GAANNNNTTC	2 cut(s)	199, 671
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	2 cut(s)	24, 337
MspR9I	CCNGG	3 cut(s)	24, 337, 338
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	33, 432
NciI	CCSGG	3 cut(s)	24, 337, 338
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	2 cut(s)	589, 719
NlaIII	CATG	7 cut(s)	286, 430, 439, 467, 524, 571, 726
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	569
NspI	RCATGY	2 cut(s)	286, 571
PaeI	GCATGC	1 cut(s)	571
PciI	ACATGT	1 cut(s)	282
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	2 cut(s)	199, 671
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	308
PscI	ACATGT	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	308, 319
PspPPI	RGGWCCY	1 cut(s)	308
RsaI	GTAC	4 cut(s)	65, 82, 347, 419
RsaNI	GTAC	4 cut(s)	64, 81, 346, 418
SacI	GAGCTC	1 cut(s)	267
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	589, 719
Sau96I	GGNCC	2 cut(s)	308, 319
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	24, 337, 338
SduI	GDGCHC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	2 cut(s)	308, 319
SmaI	CCCGGG	1 cut(s)	338
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	2 cut(s)	114, 448
SsiI	CCGC	1 cut(s)	371
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	3 cut(s)	22, 335, 336
StyI	CCWWGG	2 cut(s)	391, 421
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	1 cut(s)	8
TaqII	GACCGA	1 cut(s)	582
TasI	AATT	2 cut(s)	114, 448
TatI	WGTACW	1 cut(s)	345
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	197, 528
TspMI	CCCGGG	1 cut(s)	336
TspRI	CASTG	1 cut(s)	634
VpaK11BI	GGWCC	2 cut(s)	308, 319
XapI	RAATTY	2 cut(s)	114, 448
XceI	RCATGY	2 cut(s)	286, 571
XmaI	CCCGGG	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	2 cut(s)	199, 671
Zsp2I	ATGCAT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.