Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002350

Physical Location & Seq

Genomic Coordinates Forward (+)

68239676 .. 68244023

Gene Structure 4348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG393700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAGTCGAACCAAGCCAATCCCAGCATACTGTGCAGCCCAGAAGGCTCTCAGAGAACCCTGTACCCATATGTCACTGGTACTTCTGTAGTGGCTCTCAAGTACAAAGATGGGATTTTGATGGCTGCTGATATGGGAGGTTCATATGGATCTACCCTGCGGTACAAGAGTGTGGAACGAATGAAGCCTATTGGAAAGCATTCTCTGCTTGGTGCAAGTGGAGAAATAAGTGATTTCCAGGAGTTGTTAAAATATCTTGATGAGCTTGTCCTATATGACAACATGTGGGATGATGGGAACTCTTTGGGACCTAAAGAGATCCACAACTATTTGACCCGTGTGATGTACAATCGCCGTAACAAGTTCAACCCACTGTGGAATTCACTTGTCCTTGGTGGAGTGAAGAACGGAGAGAAATACCTTGGAATGGTTAGTATGATAGGTGTAAATTTTGAGGACAACCATGTTGCTACCGGATTTGGGAATCACCTTGCAAGGCCTATTCTTCGTGATGAGTGGCGTGAGGACTTGAGTTTCGAAGAGGGCGTGAAGCTGCTGGAGAAGTGCATGCGTGTCCTTCTGTACCGTGATAGGTCTGCTGTCAACAAGCTTCAGGTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0019774 GO:0022626 GO:0032991 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

207

Amino Acids

23.43

Weight (kDa)

6.91

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	26 - 206	1.4e-32	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56450
fragaria_vesca	FvH4_3g33020 FvH4_3g33020 FvH4_7g08240 FvH4_7g09770
malus_domestica	MD02G1138100.v1.1 MD03G1112600.v1.1 MD11G1131600.v1.1 MD15G1251900.v1.1
prunus_persica	Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1
pyrus_communis	pycom02g10950 pycom11g10870
rosa_chinensis	RchiOBHm_Chr1g0346771 RchiOBHm_Chr5g0060341
rosa_laevigata	RLG00000028779 RLG00000035357
rosa_multiflora	Rmu_sc0003232.1_g000008 Rmu_sc0003232.1_g000009 Rmu_sc0009369.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020450 Rroxscaffold_4G00308430
rosa_rugosa	Rorug01G0182900 Rorug01G0183700 Rorug05G0328900
rosa_samantha	Rh1BG167500 Rh1CG186000 Rh1DG198300 Rh5AG393700 Rh5BG406300 Rh5CG430100 Rh5DG007900 Rh5DG421000
rosa_wichuraiana	Rw1G016880 Rw5G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	2 cut(s)	157, 313
AcsI	RAATTY	2 cut(s)	379, 448
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	6 cut(s)	65, 82, 104, 164, 347, 584
AfiI	CCNNNNNNNGG	2 cut(s)	427, 480
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	3 cut(s)	265, 553, 610
AluI	AGCT	3 cut(s)	265, 553, 610
AlwI	GGATC	2 cut(s)	157, 313
AoxI	GGCC	1 cut(s)	497
ApeKI	GCWGC	3 cut(s)	36, 125, 553
ApoI	RAATTY	2 cut(s)	379, 448
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
Asp700I	GAANNNNTTC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	479
AsuII	TTCGAA	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	308
BaeI	ACNNNNGTAYC	4 cut(s)	72, 105, 154, 187
BbvI	GCAGC	3 cut(s)	48, 112, 540
BccI	CCATC	3 cut(s)	104, 115, 287
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	3 cut(s)	37, 126, 554
BlsI	GCNGC	3 cut(s)	38, 127, 555
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	578
Bpu14I	TTCGAA	1 cut(s)	537
BpuEI	CTTGAG	2 cut(s)	83, 550
BsaJI	CCNNGG	2 cut(s)	391, 421
BsaWI	WCCGGW	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	2 cut(s)	427, 480
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	391, 421
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	2 cut(s)	427, 480
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	82
BseXI	GCAGC	3 cut(s)	48, 112, 540
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	427, 480
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	149, 318
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	499
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	2 cut(s)	157, 313
BspT104I	TTCGAA	1 cut(s)	537
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	391, 421
BssMI	GATC	2 cut(s)	149, 318
BssT1I	CCWWGG	2 cut(s)	391, 421
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	33, 375, 587
Bst6I	CTCTTC	1 cut(s)	534
BstAPI	GCANNNNNTGC	2 cut(s)	33, 205
BstAUI	TGTACA	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	2 cut(s)	152, 321
BstMBI	GATC	2 cut(s)	149, 318
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 45, 205
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	2 cut(s)	286, 571
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	48, 112, 540
BstX2I	RGATCY	2 cut(s)	149, 318
BstYI	RGATCY	2 cut(s)	149, 318
BsuRI	GGCC	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	75, 371
Cac8I	GCNNGC	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	6 cut(s)	64, 81, 103, 163, 346, 583
CviAII	CATG	3 cut(s)	283, 464, 568
CviQI	GTAC	6 cut(s)	64, 81, 103, 163, 346, 583
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	2 cut(s)	151, 320
DpnII	GATC	2 cut(s)	149, 318
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	391, 421
Eco147I	AGGCCT	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	391, 421
ErhI	CCWWGG	2 cut(s)	391, 421
FaeI	CATG	3 cut(s)	286, 467, 571
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	3 cut(s)	282, 463, 567
FauNDI	CATATG	2 cut(s)	70, 145
Fnu4HI	GCNGC	3 cut(s)	37, 126, 554
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	37, 126, 554
GluI	GCNGC	3 cut(s)	37, 126, 554
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	499
HapII	CCGG	1 cut(s)	474
Hin1II	CATG	3 cut(s)	286, 467, 571
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	2 cut(s)	5, 484
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	257, 509
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	2 cut(s)	38, 587
HpyCH4III	ACNGT	3 cut(s)	33, 375, 587
HpyCH4V	TGCA	4 cut(s)	36, 215, 494, 567
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 45, 205
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	286, 467, 571
Kzo9I	GATC	2 cut(s)	149, 318
Lsp1109I	GCAGC	3 cut(s)	48, 112, 540
MaeIII	GTNAC	2 cut(s)	73, 356
MalI	GATC	2 cut(s)	151, 320
MboI	GATC	2 cut(s)	149, 318
MboII	GAAGA	3 cut(s)	415, 497, 551
MflI	RGATCY	2 cut(s)	149, 318
MluCI	AATT	2 cut(s)	379, 448
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	4 cut(s)	131, 448, 517, 535
MroXI	GAANNNNTTC	1 cut(s)	199
MseI	TTAA	1 cut(s)	248
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	3 cut(s)	33, 45, 205
NdeI	CATATG	2 cut(s)	70, 145
NdeII	GATC	2 cut(s)	149, 318
NlaIII	CATG	3 cut(s)	286, 467, 571
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	2 cut(s)	286, 571
NspV	TTCGAA	1 cut(s)	537
PaeI	GCATGC	1 cut(s)	571
PceI	AGGCCT	1 cut(s)	499
PciI	ACATGT	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	484
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	38, 127, 555
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	308
PscI	ACATGT	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	308
PspPPI	RGGWCCY	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	149, 318
RsaI	GTAC	6 cut(s)	65, 82, 104, 164, 347, 584
RsaNI	GTAC	6 cut(s)	64, 81, 103, 163, 346, 583
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	3 cut(s)	37, 126, 554
Sau3AI	GATC	2 cut(s)	149, 318
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	239
SfcI	CTRYAG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	537
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	98, 529
SmoI	CTYRAG	2 cut(s)	98, 529
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	2 cut(s)	379, 448
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	1 cut(s)	160
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	391, 421
TaaI	ACNGT	3 cut(s)	33, 375, 587
TaqI	TCGA	2 cut(s)	8, 537
TasI	AATT	2 cut(s)	379, 448
TatI	WGTACW	2 cut(s)	102, 345
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	2 cut(s)	82, 378
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	36, 125, 553
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	132, 197
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	2 cut(s)	82, 378
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	2 cut(s)	379, 448
XceI	RCATGY	2 cut(s)	286, 571
XmnI	GAANNNNTTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.