Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002350

Physical Location & Seq

Genomic Coordinates Reverse (-)

27875321 .. 27880003

Gene Structure 4683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028779

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGACTCGAACCAGGCGAAACCCAGCCTACTGTGTTCCCCAGAAGCCTCTCAGTCTCAGAGAACACTGAACCCTTACGTGACTGGCACGTCTGTTGTGGCTCTCAAATACAAAGATGGAGTTTTGATGGCTGCTGATATGGGAGGTTCCTATGGATCGACCCTCCGATACAAGAGCATTGAACGAATGAAGCCTATTGGAAAGCATTCTCTTCTCGGCGCAAGTGGAGAAATCAGTGATTTGCAGGAGCTGCTACGTTATCTTGACGAGCTCATCCAACAGGACAGCATGTGTGATGATGGAACCTCTTTGGGACCTAAAGAGATCCATAGCTACTTGACCCGTGTGATGTATAACAGGCGTAACAAGTTTGATCCGCTGTGGAACTCGCTTGTGCTTGGTGGAGTCACTGGAGTGAAGAAGGGTAAGACATACCTCGGAATGGTTACTATGATAGGTGTGAACTTTGAGGACAATCATGTCGCTACCGGATTTGGAAACCACCTTGCAAGGCCTATTCTTCGTGATGAATGGCGCGAGGACTTGAGTTTCGAAGAAGGTGTTAGACTTCTTGAGAAATGCATGCGTGTCCTTTTGTATCGTGATAGATCTGCTGTCAACAAGCTTCAGATAGCTAACATCACTAAAGAAGGTGTAACAATCTCTCAGCCCTACTCCTTGAAGACTTCCTGGAATTTCTCTGCTTTCCAAAATCCAACAGCAGGTGCCCAAGGATCATGGATGCTCTACATGCAGAACGACCTCGACATGGCCGCCGCGTCCCTCACCAACCAGCTCCGCGACCTCGACCTGTTGCTCAGATCTGGAGTGCTCCACCAGTCTAATGCCACCTCTGCCATCTCGCCCCTCGCCATTGTAAACGATGGGTCGCGCAAGGCGGTGTTCGAATCCGGGGCTACCACATTGAAAGAGAAGGCGGCAATCACCGTCGAGGCCTTCACCACCGACACGGAAAACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0019774 GO:0022626 GO:0032991 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

328

Amino Acids

36.05

Weight (kDa)

6.54

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	28 - 212	5.2e-32	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56450
fragaria_vesca	FvH4_3g33020 FvH4_3g33020 FvH4_7g08240 FvH4_7g09770
malus_domestica	MD02G1138100.v1.1 MD03G1112600.v1.1 MD11G1131600.v1.1 MD15G1251900.v1.1
prunus_persica	Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1
pyrus_communis	pycom02g10950 pycom11g10870
rosa_chinensis	RchiOBHm_Chr1g0346771 RchiOBHm_Chr5g0060341
rosa_laevigata	RLG00000028779 RLG00000035357
rosa_multiflora	Rmu_sc0003232.1_g000008 Rmu_sc0003232.1_g000009 Rmu_sc0009369.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020450 Rroxscaffold_4G00308430
rosa_rugosa	Rorug01G0182900 Rorug01G0183700 Rorug05G0328900
rosa_samantha	Rh1BG167500 Rh1CG186000 Rh1DG198300 Rh5AG393700 Rh5BG406300 Rh5CG430100 Rh5DG007900 Rh5DG421000
rosa_wichuraiana	Rw1G016880 Rw5G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	713
AasI	GACNNNNNNGTC	2 cut(s)	88, 479
Acc36I	ACCTGC	1 cut(s)	713
AccB1I	GGYRCC	1 cut(s)	725
AccII	CGCG	4 cut(s)	537, 779, 801, 892
AciI	CCGC	6 cut(s)	377, 774, 777, 799, 899, 938
AclWI	GGATC	4 cut(s)	163, 319, 368, 742
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	611
AfiI	CCNNNNNNNGG	3 cut(s)	442, 722, 769
AgsI	TTSAA	3 cut(s)	182, 682, 928
AjiI	CACGTC	1 cut(s)	90
AjnI	CCWGG	2 cut(s)	12, 689
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	6 cut(s)	250, 271, 333, 625, 635, 796
AluI	AGCT	6 cut(s)	250, 271, 333, 625, 635, 796
Alw21I	GWGCWC	2 cut(s)	273, 834
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	4 cut(s)	163, 319, 368, 742
AlwNI	CAGNNNCTG	1 cut(s)	250
AoxI	GGCC	3 cut(s)	512, 771, 954
ApeKI	GCWGC	2 cut(s)	131, 250
ApoI	RAATTY	1 cut(s)	694
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	3 cut(s)	221, 537, 894
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	913
AsuHPI	GGTGA	3 cut(s)	778, 937, 952
AsuII	TTCGAA	2 cut(s)	552, 906
AvaII	GGWCC	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	725
BanII	GRGCYC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	689
Bbv12I	GWGCWC	2 cut(s)	273, 834
BbvI	GCAGC	2 cut(s)	118, 237
BccI	CCATC	5 cut(s)	110, 121, 293, 866, 878
BciT130I	CCWGG	2 cut(s)	14, 691
BcnI	CCSGG	1 cut(s)	913
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	982
BfuAI	ACCTGC	1 cut(s)	713
BglII	AGATCT	2 cut(s)	608, 821
BisI	GCNGC	5 cut(s)	132, 251, 774, 777, 939
BlsI	GCNGC	5 cut(s)	133, 252, 775, 778, 940
Bme1390I	CCNGG	3 cut(s)	14, 691, 913
Bme18I	GGWCC	1 cut(s)	314
BmgBI	CACGTC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	4 cut(s)	148, 304, 315, 727
BmrFI	CCNGG	3 cut(s)	14, 691, 913
BmsI	GCATC	1 cut(s)	732
BpiI	GAAGAC	1 cut(s)	689
BpmI	CTGGAG	2 cut(s)	432, 846
Bpu14I	TTCGAA	2 cut(s)	552, 906
BpuEI	CTTGAG	2 cut(s)	565, 593
BpuMI	CCSGG	1 cut(s)	913
BsaAI	YACGTR	1 cut(s)	79
BsaJI	CCNNGG	3 cut(s)	436, 730, 912
BsaWI	WCCGGW	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	3 cut(s)	442, 722, 769
Bse1I	ACTGG	3 cut(s)	88, 415, 838
BseBI	CCWGG	2 cut(s)	14, 691
BseDI	CCNNGG	3 cut(s)	436, 730, 912
BseGI	GGATG	2 cut(s)	273, 747
BseLI	CCNNNNNNNGG	3 cut(s)	442, 722, 769
BseMII	CTCAG	4 cut(s)	65, 71, 680, 832
BseNI	ACTGG	3 cut(s)	88, 415, 838
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	2 cut(s)	118, 237
BseYI	CCCAGC	1 cut(s)	23
Bsh1236I	CGCG	4 cut(s)	537, 779, 801, 892
BshFI	GGCC	3 cut(s)	514, 773, 956
BshNI	GGYRCC	1 cut(s)	725
BsiHKAI	GWGCWC	2 cut(s)	273, 834
BsiSI	CCGG	2 cut(s)	489, 912
BslFI	GGGAC	2 cut(s)	327, 766
BslI	CCNNNNNNNGG	3 cut(s)	442, 722, 769
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	2 cut(s)	327, 766
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	3 cut(s)	514, 773, 956
Bsp119I	TTCGAA	2 cut(s)	552, 906
Bsp1286I	GDGCHC	3 cut(s)	273, 730, 834
Bsp143I	GATC	6 cut(s)	155, 324, 373, 608, 734, 821
BspACI	CCGC	6 cut(s)	377, 774, 777, 799, 899, 938
BspANI	GGCC	3 cut(s)	514, 773, 956
BspCNI	CTCAG	4 cut(s)	64, 70, 679, 831
BspFNI	CGCG	4 cut(s)	537, 779, 801, 892
BspLI	GGNNCC	4 cut(s)	148, 304, 315, 727
BspMI	ACCTGC	1 cut(s)	713
BspPI	GGATC	4 cut(s)	163, 319, 368, 742
BspT104I	TTCGAA	2 cut(s)	552, 906
BspT107I	GGYRCC	1 cut(s)	725
BsrI	ACTGG	3 cut(s)	88, 415, 838
BssECI	CCNNGG	3 cut(s)	436, 730, 912
BssMI	GATC	6 cut(s)	155, 324, 373, 608, 734, 821
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	2 cut(s)	14, 691
Bst4CI	ACNGT	2 cut(s)	33, 949
Bst6I	CTCTTC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstBAI	YACGTR	1 cut(s)	79
BstBI	TTCGAA	2 cut(s)	552, 906
BstC8I	GCNNGC	1 cut(s)	584
BstDEI	CTNAG	4 cut(s)	51, 57, 666, 818
BstF5I	GGATG	2 cut(s)	273, 747
BstFNI	CGCG	4 cut(s)	537, 779, 801, 892
BstHHI	GCGC	3 cut(s)	221, 537, 894
BstKTI	GATC	6 cut(s)	158, 327, 376, 611, 737, 824
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	6 cut(s)	155, 324, 373, 608, 734, 821
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 751, 854
BstNI	CCWGG	2 cut(s)	14, 691
BstNSI	RCATGY	3 cut(s)	292, 586, 754
BstSCI	CCNGG	3 cut(s)	12, 689, 911
BstSLI	GKGCMC	1 cut(s)	730
BstUI	CGCG	4 cut(s)	537, 779, 801, 892
BstV1I	GCAGC	2 cut(s)	118, 237
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	3 cut(s)	324, 608, 821
BstYI	RGATCY	3 cut(s)	324, 608, 821
BsuRI	GGCC	3 cut(s)	514, 773, 956
BtrI	CACGTC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	273, 747
BtsIMutI	CAGTG	3 cut(s)	65, 241, 408
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	1 cut(s)	584
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	3 cut(s)	221, 537, 894
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	1 cut(s)	768
CviAII	CATG	6 cut(s)	289, 479, 583, 738, 751, 769
DdeI	CTNAG	4 cut(s)	51, 57, 666, 818
DpnI	GATC	6 cut(s)	157, 326, 375, 610, 736, 823
DpnII	GATC	6 cut(s)	155, 324, 373, 608, 734, 821
DrdI	GACNNNNNNGTC	2 cut(s)	88, 479
DseDI	GACNNNNNNGTC	2 cut(s)	88, 479
EaeI	YGGCCR	1 cut(s)	771
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	730
Eco147I	AGGCCT	2 cut(s)	514, 956
Eco24I	GRGCYC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	611
EcoICRI	GAGCTC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	12, 689
EcoT14I	CCWWGG	1 cut(s)	730
EcoT22I	ATGCAT	1 cut(s)	584
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	6 cut(s)	292, 482, 586, 741, 754, 772
FaqI	GGGAC	2 cut(s)	327, 766
FatI	CATG	6 cut(s)	288, 478, 582, 737, 750, 768
Fnu4HI	GCNGC	5 cut(s)	132, 251, 774, 777, 939
FokI	GGATG	2 cut(s)	260, 754
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	5 cut(s)	132, 251, 774, 777, 939
FspBI	CTAG	1 cut(s)	982
GlaI	GCGC	3 cut(s)	220, 536, 893
GluI	GCNGC	5 cut(s)	132, 251, 774, 777, 939
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	2 cut(s)	432, 846
HaeIII	GGCC	3 cut(s)	514, 773, 956
HapII	CCGG	2 cut(s)	489, 912
HgaI	GACGC	1 cut(s)	768
HhaI	GCGC	3 cut(s)	221, 537, 894
Hin1II	CATG	6 cut(s)	292, 482, 586, 741, 754, 772
Hin6I	GCGC	3 cut(s)	219, 535, 892
HinP1I	GCGC	3 cut(s)	219, 535, 892
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	3 cut(s)	5, 405, 908
HpaII	CCGG	2 cut(s)	489, 912
HphI	GGTGA	3 cut(s)	778, 937, 952
Hpy166II	GTNNAC	3 cut(s)	463, 619, 880
Hpy188I	TCNGA	5 cut(s)	60, 167, 440, 630, 821
Hpy188III	TCNNGA	5 cut(s)	263, 524, 572, 602, 825
Hpy8I	GTNNAC	3 cut(s)	463, 619, 880
Hpy99I	CGWCG	1 cut(s)	953
HpyAV	CCTTC	5 cut(s)	415, 551, 644, 928, 967
HpyCH4III	ACNGT	2 cut(s)	33, 949
HpyCH4IV	ACGT	3 cut(s)	78, 89, 256
HpyCH4V	TGCA	4 cut(s)	244, 509, 582, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 751, 854
HpyF3I	CTNAG	4 cut(s)	51, 57, 666, 818
HpySE526I	ACGT	3 cut(s)	78, 89, 256
Hsp92II	CATG	6 cut(s)	292, 482, 586, 741, 754, 772
HspAI	GCGC	3 cut(s)	219, 535, 892
Kzo9I	GATC	6 cut(s)	155, 324, 373, 608, 734, 821
LmnI	GCTCC	3 cut(s)	247, 801, 837
Lsp1109I	GCAGC	2 cut(s)	118, 237
LweI	GCATC	1 cut(s)	732
MaeI	CTAG	1 cut(s)	982
MaeII	ACGT	3 cut(s)	78, 89, 256
MaeIII	GTNAC	5 cut(s)	79, 362, 406, 445, 655
MalI	GATC	6 cut(s)	157, 326, 375, 610, 736, 823
MboI	GATC	6 cut(s)	155, 324, 373, 608, 734, 821
MboII	GAAGA	5 cut(s)	203, 430, 512, 566, 694
MflI	RGATCY	3 cut(s)	324, 608, 821
MhlI	GDGCHC	3 cut(s)	273, 730, 834
MluCI	AATT	1 cut(s)	694
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	2 cut(s)	301, 740
Mph1103I	ATGCAT	1 cut(s)	584
MroXI	GAANNNNTTC	1 cut(s)	205
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	2 cut(s)	489, 912
MspR9I	CCNGG	3 cut(s)	14, 691, 913
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	2 cut(s)	14, 691
MvnI	CGCG	4 cut(s)	537, 779, 801, 892
MwoI	GCNNNNNNNGC	3 cut(s)	250, 751, 854
NciI	CCSGG	1 cut(s)	913
NdeII	GATC	6 cut(s)	155, 324, 373, 608, 734, 821
NlaIII	CATG	6 cut(s)	292, 482, 586, 741, 754, 772
NlaIV	GGNNCC	4 cut(s)	148, 304, 315, 727
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	79, 406
NsiI	ATGCAT	1 cut(s)	584
NspI	RCATGY	3 cut(s)	292, 586, 754
NspV	TTCGAA	2 cut(s)	552, 906
OliI	CACNNNNGTG	1 cut(s)	413
PaeI	GCATGC	1 cut(s)	586
PaqCI	CACCTGC	1 cut(s)	713
PceI	AGGCCT	2 cut(s)	514, 956
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	908
PfoI	TCCNGGA	1 cut(s)	689
PkrI	GCNGC	5 cut(s)	133, 252, 775, 778, 940
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Ppu21I	YACGTR	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	12, 689
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	2 cut(s)	12, 689
PspN4I	GGNNCC	4 cut(s)	148, 304, 315, 727
PspPI	GGNCC	1 cut(s)	314
PspPPI	RGGWCCY	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	250
PsuI	RGATCY	3 cut(s)	324, 608, 821
RseI	CAYNNNNRTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	273
SatI	GCNGC	5 cut(s)	132, 251, 774, 777, 939
Sau3AI	GATC	6 cut(s)	155, 324, 373, 608, 734, 821
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	3 cut(s)	14, 691, 913
SduI	GDGCHC	3 cut(s)	273, 730, 834
SfaNI	GCATC	1 cut(s)	732
SfuI	TTCGAA	2 cut(s)	552, 906
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	2 cut(s)	544, 572
SmoI	CTYRAG	2 cut(s)	544, 572
SphI	GCATGC	1 cut(s)	586
Sse9I	AATT	1 cut(s)	694
SseBI	AGGCCT	2 cut(s)	514, 956
SsiI	CCGC	6 cut(s)	377, 774, 777, 799, 899, 938
SspMI	CTAG	1 cut(s)	982
SstI	GAGCTC	1 cut(s)	273
StuI	AGGCCT	2 cut(s)	514, 956
StyD4I	CCNGG	3 cut(s)	12, 689, 911
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	2 cut(s)	33, 949
TaiI	ACGT	3 cut(s)	81, 92, 259
TaqI	TCGA	7 cut(s)	8, 158, 552, 765, 807, 906, 951
TasI	AATT	1 cut(s)	694
TauI	GCSGC	3 cut(s)	776, 779, 941
TfiI	GAWTC	1 cut(s)	908
TscAI	CASTG	3 cut(s)	72, 241, 415
TseFI	GTSAC	2 cut(s)	79, 406
TseI	GCWGC	2 cut(s)	131, 250
Tsp45I	GTSAC	2 cut(s)	79, 406
TspDTI	ATGAA	2 cut(s)	203, 543
TspRI	CASTG	3 cut(s)	72, 241, 415
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	694
XceI	RCATGY	3 cut(s)	292, 586, 754
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	1 cut(s)	982
Zsp2I	ATGCAT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.