Rh5DG007900

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002350
Physical Location & Seq
Forward (+)
506691 .. 506936
246 bp
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UTR
Exon/CDS
Intron
Rh5DG007900.1

Sequence Viewer

Length: 246 bp
ATGGGTGTAAATTTTGAGGACAACCATGTTGCTACCGGATTTGGGAATCACCTTGCAAGGCCTATTCTTCGTGATGAGTGGCGTGAGGACTTGAGTTTCGAAGAAGGCGTGAAGCTGCTGGAGAAGTGCATGCGTGTCCTTCTGTACCGTGATAGGTCTGCTGTCAACAAGCTTCAGATAGCTAAGATCACTGGAGAAGGTGTAACAATCTCTCAACCCTACTCTTTGAAGACTTTCTGGGGATAA

Protein Analysis

81

Amino Acids

9.3

Weight (kDa)

6.72

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 2 - 63 1.1e-09 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 3 cut(s) 115, 172, 182
AluI AGCT 3 cut(s) 115, 172, 182
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 10
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
Asp700I GAANNNNTTC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 41
AsuII TTCGAA 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 102
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 236
BpmI CTGGAG 2 cut(s) 140, 213
Bpu14I TTCGAA 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 112
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 102
BshFI GGCC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 42
BsnI GGCC 1 cut(s) 61
Bsp119I TTCGAA 1 cut(s) 99
Bsp143I GATC 1 cut(s) 186
BspANI GGCC 1 cut(s) 61
BspT104I TTCGAA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 196
BssMI GATC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 183
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 102
BstV2I GAAGAC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 26, 130
CviJI RGCY 4 cut(s) 61, 115, 172, 182
CviKI_1 RGCY 4 cut(s) 61, 115, 172, 182
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 158
FaeI CATG 2 cut(s) 29, 133
FaiI YATR 2 cut(s) 27, 131
FatI CATG 2 cut(s) 25, 129
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
GsuI CTGGAG 2 cut(s) 140, 213
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 36
Hin1II CATG 2 cut(s) 29, 133
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 1 cut(s) 46
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 3 cut(s) 98, 149, 191
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 56, 129
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 2 cut(s) 29, 133
Kzo9I GATC 1 cut(s) 186
LpnPI CCDG 4 cut(s) 49, 104, 177, 223
Lsp1109I GCAGC 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 3 cut(s) 59, 113, 241
MluCI AATT 1 cut(s) 10
MnlI CCTC 2 cut(s) 10, 79
MroXI GAANNNNTTC 1 cut(s) 233
MspI CCGG 1 cut(s) 36
NdeII GATC 1 cut(s) 186
NlaIII CATG 2 cut(s) 29, 133
NspI RCATGY 1 cut(s) 133
NspV TTCGAA 1 cut(s) 99
PaeI GCATGC 1 cut(s) 133
PceI AGGCCT 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 1 cut(s) 117
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 186
SetI ASST 6 cut(s) 54, 117, 158, 174, 184, 202
SfuI TTCGAA 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SphI GCATGC 1 cut(s) 133
Sse9I AATT 1 cut(s) 10
SseBI AGGCCT 1 cut(s) 61
StuI AGGCCT 1 cut(s) 61
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 10
TfiI GAWTC 1 cut(s) 46
TscAI CASTG 1 cut(s) 196
TseI GCWGC 1 cut(s) 115
TspRI CASTG 1 cut(s) 196
XapI RAATTY 1 cut(s) 10
XceI RCATGY 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.