FvH4_7g08240

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002350
Physical Location & Seq
Reverse (-)
8186776 .. 8187551
776 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08240.t1

Sequence Viewer

Length: 762 bp
ATGAACTCAATGGAATCGAACCAGGCGCAGCCCAACCTATTTTGCTCCCCAGAAGCCTTTCAGTCTCAGAGAACACTGAACCCTTACGTGACTGGCACGTCTGTTGTGGCTCTGAAATACAAAGATGGAGTTTTGATGGCTGCAGATATGGGGGGTTCATATGGATCCACTCTCCGATACAAAAGCATCGAACGAATGAAGCCTATCGGAAAGCATTCTCTCATCGGTGCAAGTGGAGAAATAAGTGATTTCCAGGAGGTGCTACGTTATCTTGACGAGCTCACCATGCAGGACAACATGTGTGATGATGGAAACTCTTTGGGACCTAAAGAGATCCACAGCTACTTGAGCAGTGTGATGTACAACAGGCGTAACAAGTTTGATCCGCTGTGGAACTCGTTTGTCCTTGCTGGAGTGAAGAAGAAACCTGGAGTTGATGATAAGAGAGAGACATACCTTGGACTGGTTACTATGATAGGTGTGAACTTTGAGGACGATCATGTCGCTACGGGATTCGGAAACCACCTTGCGAGGCCTATCCTTCGTGATGAATGGCGTGAGGACTTGAGTTTCGAAGAGGGTGTTAAGCTTCTGGAGAAATGCATGCGTGTGCTTTTGTATCGTGATAGGTCTGCTGTAAACAAGCTTCAGATAGCTAACATCACCGAAAAAGGTTTAACAATCTCTCAGCCTTACTCCTTGAAGACTTTCTGGGGTTTCTCTGCTTTCCAAAATCCAACAGCAGGTGCTCAAGGATCATGA

Protein Analysis

254

Amino Acids

28.36

Weight (kDa)

6.44

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 31 - 219 2.1e-30 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 734
AasI GACNNNNNNGTC 2 cut(s) 97, 500
Acc36I ACCTGC 1 cut(s) 734
AciI CCGC 1 cut(s) 386
AclWI GGATC 4 cut(s) 159, 172, 328, 377
AcuI CTGAAG 1 cut(s) 632
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 2 cut(s) 463, 743
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 703
AjiI CACGTC 1 cut(s) 99
AjnI CCWGG 3 cut(s) 21, 252, 427
AluBI AGCT 5 cut(s) 280, 342, 589, 646, 656
AluI AGCT 5 cut(s) 280, 342, 589, 646, 656
Alw21I GWGCWC 2 cut(s) 282, 751
Alw26I GTCTC 2 cut(s) 69, 443
AlwI GGATC 4 cut(s) 159, 172, 328, 377
AoxI GGCC 1 cut(s) 533
ApeKI GCWGC 2 cut(s) 28, 140
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
Asp700I GAANNNNTTC 3 cut(s) 57, 214, 707
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 274, 655
AsuII TTCGAA 1 cut(s) 573
AvaII GGWCC 1 cut(s) 323
BamHI GGATCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 282
BarI GAAGNNNNNNTAC 2 cut(s) 630, 662
BbsI GAAGAC 1 cut(s) 710
Bbv12I GWGCWC 2 cut(s) 282, 751
BbvI GCAGC 2 cut(s) 40, 127
BccI CCATC 3 cut(s) 119, 130, 302
BciT130I CCWGG 3 cut(s) 23, 254, 429
BcoDI GTCTC 2 cut(s) 69, 443
BfmI CTRYAG 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 734
BisI GCNGC 2 cut(s) 29, 141
BlsI GCNGC 2 cut(s) 30, 142
Bme1390I CCNGG 3 cut(s) 23, 254, 429
Bme18I GGWCC 1 cut(s) 323
BmgBI CACGTC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 2 cut(s) 166, 324
BmrFI CCNGG 3 cut(s) 23, 254, 429
BmsI GCATC 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 710
BpmI CTGGAG 3 cut(s) 432, 450, 614
Bpu14I TTCGAA 1 cut(s) 573
BpuEI CTTGAG 3 cut(s) 367, 586, 735
BsaAI YACGTR 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 743
Bse1I ACTGG 2 cut(s) 97, 468
BseBI CCWGG 3 cut(s) 23, 254, 429
BseDI CCNNGG 1 cut(s) 457
BseLI CCNNNNNNNGG 2 cut(s) 463, 743
BseMII CTCAG 2 cut(s) 80, 701
BseNI ACTGG 2 cut(s) 97, 468
BseXI GCAGC 2 cut(s) 40, 127
BshFI GGCC 1 cut(s) 535
BsiHKAI GWGCWC 2 cut(s) 282, 751
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 463, 743
BsmAI GTCTC 2 cut(s) 69, 443
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 535
Bsp119I TTCGAA 1 cut(s) 573
Bsp1286I GDGCHC 2 cut(s) 282, 751
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 5 cut(s) 164, 333, 382, 496, 755
BspACI CCGC 1 cut(s) 386
BspANI GGCC 1 cut(s) 535
BspCNI CTCAG 2 cut(s) 79, 700
BspHI TCATGA 1 cut(s) 758
BspLI GGNNCC 2 cut(s) 166, 324
BspMAI CTGCAG 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 734
BspPI GGATC 4 cut(s) 159, 172, 328, 377
BspT104I TTCGAA 1 cut(s) 573
BsrGI TGTACA 1 cut(s) 360
BsrI ACTGG 2 cut(s) 97, 468
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 5 cut(s) 164, 333, 382, 496, 755
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 3 cut(s) 23, 254, 429
Bst6I CTCTTC 1 cut(s) 570
BstAUI TGTACA 1 cut(s) 360
BstBAI YACGTR 1 cut(s) 88
BstBI TTCGAA 1 cut(s) 573
BstC8I GCNNGC 1 cut(s) 605
BstDEI CTNAG 2 cut(s) 66, 687
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 5 cut(s) 167, 336, 385, 499, 758
BstMAI GTCTC 2 cut(s) 69, 443
BstMBI GATC 5 cut(s) 164, 333, 382, 496, 755
BstMWI GCNNNNNNNGC 2 cut(s) 286, 348
BstNI CCWGG 3 cut(s) 23, 254, 429
BstNSI RCATGY 2 cut(s) 301, 607
BstSCI CCNGG 3 cut(s) 21, 252, 427
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 40, 127
BstV2I GAAGAC 1 cut(s) 710
BstX2I RGATCY 2 cut(s) 164, 333
BstYI RGATCY 2 cut(s) 164, 333
BsuRI GGCC 1 cut(s) 535
BtrI CACGTC 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 74, 358
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 1 cut(s) 605
CciI TCATGA 1 cut(s) 758
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 361
CviAII CATG 5 cut(s) 286, 298, 500, 604, 759
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 2 cut(s) 66, 687
DpnI GATC 5 cut(s) 166, 335, 384, 498, 757
DpnII GATC 5 cut(s) 164, 333, 382, 496, 755
DrdI GACNNNNNNGTC 2 cut(s) 97, 500
DseDI GACNNNNNNGTC 2 cut(s) 97, 500
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 457
Eco147I AGGCCT 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 632
EcoICRI GAGCTC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 3 cut(s) 21, 252, 427
EcoT14I CCWWGG 1 cut(s) 457
EcoT22I ATGCAT 1 cut(s) 605
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 5 cut(s) 289, 301, 503, 607, 762
FaqI GGGAC 1 cut(s) 336
FatI CATG 5 cut(s) 285, 297, 499, 603, 758
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 29, 141
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 2 cut(s) 29, 141
GlaI GCGC 1 cut(s) 27
GluI GCNGC 2 cut(s) 29, 141
GsuI CTGGAG 3 cut(s) 432, 450, 614
HaeIII GGCC 1 cut(s) 535
HhaI GCGC 1 cut(s) 28
Hin1II CATG 5 cut(s) 289, 301, 503, 607, 762
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 2 cut(s) 587, 644
HinfI GANTC 2 cut(s) 14, 513
HphI GGTGA 2 cut(s) 274, 655
Hpy166II GTNNAC 2 cut(s) 484, 640
Hpy188I TCNGA 6 cut(s) 69, 114, 176, 209, 518, 651
Hpy188III TCNNGA 5 cut(s) 272, 545, 593, 623, 759
Hpy8I GTNNAC 2 cut(s) 484, 640
HpyAV CCTTC 1 cut(s) 551
HpyCH4IV ACGT 3 cut(s) 87, 98, 265
HpyCH4V TGCA 4 cut(s) 143, 230, 289, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 348
HpyF3I CTNAG 2 cut(s) 66, 687
HpySE526I ACGT 3 cut(s) 87, 98, 265
Hsp92II CATG 5 cut(s) 289, 301, 503, 607, 762
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 5 cut(s) 164, 333, 382, 496, 755
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 2 cut(s) 40, 127
LweI GCATC 1 cut(s) 195
MaeII ACGT 3 cut(s) 87, 98, 265
MaeIII GTNAC 3 cut(s) 88, 371, 466
MalI GATC 5 cut(s) 166, 335, 384, 498, 757
MboI GATC 5 cut(s) 164, 333, 382, 496, 755
MboII GAAGA 4 cut(s) 430, 433, 587, 715
MflI RGATCY 2 cut(s) 164, 333
MhlI GDGCHC 2 cut(s) 282, 751
MmeI TCCRAC 1 cut(s) 761
MnlI CCTC 5 cut(s) 250, 484, 525, 553, 571
Mph1103I ATGCAT 1 cut(s) 605
MroXI GAANNNNTTC 3 cut(s) 57, 214, 707
MseI TTAA 2 cut(s) 585, 677
MslI CAYNNNNRTG 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 388
MspR9I CCNGG 3 cut(s) 23, 254, 429
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 3 cut(s) 23, 254, 429
MwoI GCNNNNNNNGC 2 cut(s) 286, 348
NdeI CATATG 1 cut(s) 160
NdeII GATC 5 cut(s) 164, 333, 382, 496, 755
NlaIII CATG 5 cut(s) 289, 301, 503, 607, 762
NlaIV GGNNCC 2 cut(s) 166, 324
NmuCI GTSAC 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 605
NspI RCATGY 2 cut(s) 301, 607
NspV TTCGAA 1 cut(s) 573
PaeI GCATGC 1 cut(s) 607
PagI TCATGA 1 cut(s) 758
PaqCI CACCTGC 1 cut(s) 734
PceI AGGCCT 1 cut(s) 535
PciI ACATGT 1 cut(s) 297
PctI GAATGC 1 cut(s) 214
PdmI GAANNNNTTC 3 cut(s) 57, 214, 707
PfeI GAWTC 2 cut(s) 14, 513
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 2 cut(s) 30, 142
Ppu21I YACGTR 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 323
PscI ACATGT 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 3 cut(s) 21, 252, 427
PspGI CCWGG 3 cut(s) 21, 252, 427
PspN4I GGNNCC 2 cut(s) 166, 324
PspPI GGNCC 1 cut(s) 323
PspPPI RGGWCCY 1 cut(s) 323
PstI CTGCAG 1 cut(s) 145
PsuI RGATCY 2 cut(s) 164, 333
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 608
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 585, 677
SatI GCNGC 2 cut(s) 29, 141
Sau3AI GATC 5 cut(s) 164, 333, 382, 496, 755
Sau96I GGNCC 1 cut(s) 323
ScrFI CCNGG 3 cut(s) 23, 254, 429
SduI GDGCHC 2 cut(s) 282, 751
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 141
SfuI TTCGAA 1 cut(s) 573
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 3 cut(s) 346, 565, 750
SmoI CTYRAG 3 cut(s) 346, 565, 750
SphI GCATGC 1 cut(s) 607
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 1 cut(s) 386
SstI GAGCTC 1 cut(s) 282
StuI AGGCCT 1 cut(s) 535
StyD4I CCNGG 3 cut(s) 21, 252, 427
StyI CCWWGG 1 cut(s) 457
TaiI ACGT 3 cut(s) 90, 101, 268
TaqI TCGA 3 cut(s) 17, 189, 573
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 2 cut(s) 14, 513
Tru1I TTAA 2 cut(s) 585, 677
Tru9I TTAA 2 cut(s) 585, 677
TscAI CASTG 2 cut(s) 81, 358
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 28, 140
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 4 cut(s) 17, 147, 212, 564
TspRI CASTG 2 cut(s) 81, 358
VpaK11BI GGWCC 1 cut(s) 323
XceI RCATGY 2 cut(s) 301, 607
XmnI GAANNNNTTC 3 cut(s) 57, 214, 707
Zsp2I ATGCAT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.