Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002350

Physical Location & Seq

Genomic Coordinates Reverse (-)

9233618 .. 9236688

Gene Structure 3071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10870.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTGCTGATATGGGAGGTTCTTATGGGTCTACCCTGCGATATAAGAGTGTGGAGCGAATGAAGGCCGTTGGAAAGCATTCTCTTCTTGGTGCAAGTGGAGAAATAAGTGACTTTCAGGAGCTATTACGTTATCTTGATGAACTCATCCTATACGACAACATGTGGGATGATGGGAACTCTTTGGGACCGAAAGAGGTACACAACTATCTGACTCGTGTGATGTACAATAGGCGTAACAAGTTCAATCCACTGTGGAACTCTCTTGTCCTTGGTGGAGTAAAAAAGGGACAGAAGTATCTTGGCATGGTTAGCATGATAGGCGTGAATTTCGAGGACAATCATGTAGCAACTGGGTTTGGAAATCACCTTGCACGGCCTATTCTTCGTGATGAGTGGCATGAGAACTTGACTTTCGAAGAAGGTGTAAAGCTGCTGGAGAAATGCATGCGTGTCCTTCTCTATCGTGATCGGTCTGCTGTGAACAAGCTTCAGATATCTAAGATCACTGAAGAAGGCGTGACTATCTCGCAGCCCTACTCTTTGAAGACTTTCTGGGGTTTCTCCGCTTTCGAAAATCCAACACTGGGAGCTGAAGGATCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

203

Amino Acids

22.96

Weight (kDa)

6.97

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56450
fragaria_vesca	FvH4_3g33020 FvH4_3g33020 FvH4_7g08240 FvH4_7g09770
malus_domestica	MD02G1138100.v1.1 MD03G1112600.v1.1 MD11G1131600.v1.1 MD15G1251900.v1.1
prunus_persica	Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1
pyrus_communis	pycom02g10950 pycom11g10870
rosa_chinensis	RchiOBHm_Chr1g0346771 RchiOBHm_Chr5g0060341
rosa_laevigata	RLG00000028779 RLG00000035357
rosa_multiflora	Rmu_sc0003232.1_g000008 Rmu_sc0003232.1_g000009 Rmu_sc0009369.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020450 Rroxscaffold_4G00308430
rosa_rugosa	Rorug01G0182900 Rorug01G0183700 Rorug05G0328900
rosa_samantha	Rh1BG167500 Rh1CG186000 Rh1DG198300 Rh5AG393700 Rh5BG406300 Rh5CG430100 Rh5DG007900 Rh5DG421000
rosa_wichuraiana	Rw1G016880 Rw5G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	1 cut(s)	607
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	2 cut(s)	476, 531
AfaI	GTAC	2 cut(s)	201, 227
AfiI	CCNNNNNNNGG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	247, 547
AluBI	AGCT	4 cut(s)	124, 433, 490, 593
AluI	AGCT	4 cut(s)	124, 433, 490, 593
AlwI	GGATC	1 cut(s)	607
AoxI	GGCC	2 cut(s)	66, 377
ApeKI	GCWGC	3 cut(s)	5, 433, 532
ApoI	RAATTY	1 cut(s)	328
Asp700I	GAANNNNTTC	2 cut(s)	79, 551
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	359
AsuII	TTCGAA	2 cut(s)	417, 573
AvaII	GGWCC	1 cut(s)	188
BaeI	ACNNNNGTAYC	2 cut(s)	281, 314
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	420, 544
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	2 cut(s)	53, 392
BisI	GCNGC	3 cut(s)	6, 434, 533
BlsI	GCNGC	3 cut(s)	7, 435, 534
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	189
BmrI	ACTGGG	2 cut(s)	363, 596
BmuI	ACTGGG	2 cut(s)	363, 596
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	458
Bpu14I	TTCGAA	2 cut(s)	417, 573
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	358, 591
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	147, 175
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseNI	ACTGG	2 cut(s)	358, 591
BseXI	GCAGC	2 cut(s)	420, 544
BshFI	GGCC	2 cut(s)	68, 379
BslFI	GGGAC	2 cut(s)	201, 303
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmFI	GGGAC	2 cut(s)	201, 303
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	68, 379
Bsp119I	TTCGAA	2 cut(s)	417, 573
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	469, 504, 599
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	2 cut(s)	68, 379
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	607
BspT104I	TTCGAA	2 cut(s)	417, 573
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	358, 591
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	3 cut(s)	469, 504, 599
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	271
Bst2BI	CACGAG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	225
BstBI	TTCGAA	2 cut(s)	417, 573
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	147, 175
BstKTI	GATC	3 cut(s)	472, 507, 602
BstMBI	GATC	3 cut(s)	469, 504, 599
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 321
BstNSI	RCATGY	2 cut(s)	166, 451
BstV1I	GCAGC	2 cut(s)	420, 544
BstV2I	GAAGAC	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	68, 379
BtsCI	GGATG	2 cut(s)	147, 175
BtsIMutI	CAGTG	3 cut(s)	251, 507, 584
Cac8I	GCNNGC	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	200, 226
CviAII	CATG	7 cut(s)	163, 307, 316, 344, 401, 448, 603
CviJI	RGCY	8 cut(s)	5, 68, 124, 379, 433, 490, 535, 593
CviKI_1	RGCY	8 cut(s)	5, 68, 124, 379, 433, 490, 535, 593
CviQI	GTAC	2 cut(s)	200, 226
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	3 cut(s)	471, 506, 601
DpnII	GATC	3 cut(s)	469, 504, 599
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	271
Eco32I	GATATC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	2 cut(s)	476, 531
EcoRV	GATATC	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	7 cut(s)	166, 310, 319, 347, 404, 451, 606
FaqI	GGGAC	2 cut(s)	201, 303
FatI	CATG	7 cut(s)	162, 306, 315, 343, 400, 447, 602
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	3 cut(s)	6, 434, 533
FokI	GGATG	2 cut(s)	134, 182
Fsp4HI	GCNGC	3 cut(s)	6, 434, 533
GluI	GCNGC	3 cut(s)	6, 434, 533
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	68, 379
Hin1II	CATG	7 cut(s)	166, 310, 319, 347, 404, 451, 606
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	1 cut(s)	214
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	3 cut(s)	33, 202, 484
Hpy188I	TCNGA	2 cut(s)	213, 495
Hpy188III	TCNNGA	4 cut(s)	119, 137, 389, 467
Hpy8I	GTNNAC	3 cut(s)	33, 202, 484
HpyAV	CCTTC	5 cut(s)	58, 416, 467, 509, 590
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	3 cut(s)	95, 374, 447
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 321
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	7 cut(s)	166, 310, 319, 347, 404, 451, 606
Kzo9I	GATC	3 cut(s)	469, 504, 599
LmnI	GCTCC	3 cut(s)	55, 121, 590
LpnPI	CCDG	6 cut(s)	50, 104, 339, 422, 541, 572
Lsp1109I	GCAGC	2 cut(s)	420, 544
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	3 cut(s)	110, 236, 520
MalI	GATC	3 cut(s)	471, 506, 601
MboI	GATC	3 cut(s)	469, 504, 599
MboII	GAAGA	5 cut(s)	77, 377, 431, 524, 559
MluCI	AATT	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	2 cut(s)	52, 605
MnlI	CCTC	3 cut(s)	11, 190, 328
Mph1103I	ATGCAT	1 cut(s)	449
MroXI	GAANNNNTTC	2 cut(s)	79, 551
Mva1269I	GAATGC	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	312, 321
NdeII	GATC	3 cut(s)	469, 504, 599
NlaIII	CATG	7 cut(s)	166, 310, 319, 347, 404, 451, 606
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	2 cut(s)	110, 520
NsiI	ATGCAT	1 cut(s)	449
NspI	RCATGY	2 cut(s)	166, 451
NspV	TTCGAA	2 cut(s)	417, 573
PaeI	GCATGC	1 cut(s)	451
PciI	ACATGT	1 cut(s)	162
PctI	GAATGC	1 cut(s)	79
PdmI	GAANNNNTTC	2 cut(s)	79, 551
PkrI	GCNGC	3 cut(s)	7, 435, 534
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PscI	ACATGT	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	188
RsaI	GTAC	2 cut(s)	201, 227
RsaNI	GTAC	2 cut(s)	200, 226
SatI	GCNGC	3 cut(s)	6, 434, 533
Sau3AI	GATC	3 cut(s)	469, 504, 599
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	208
SetI	ASST	9 cut(s)	22, 126, 133, 201, 372, 427, 435, 492, 595
SfuI	TTCGAA	2 cut(s)	417, 573
SinI	GGWCC	1 cut(s)	188
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	3 cut(s)	333, 417, 573
TaqII	GACCGA	2 cut(s)	205, 462
TasI	AATT	1 cut(s)	328
TatI	WGTACW	1 cut(s)	225
TscAI	CASTG	3 cut(s)	258, 514, 591
TseFI	GTSAC	2 cut(s)	110, 520
TseI	GCWGC	3 cut(s)	5, 433, 532
Tsp45I	GTSAC	2 cut(s)	110, 520
TspDTI	ATGAA	2 cut(s)	77, 156
TspRI	CASTG	3 cut(s)	258, 514, 591
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	2 cut(s)	166, 451
XmiI	GTMKAC	1 cut(s)	32
XmnI	GAANNNNTTC	2 cut(s)	79, 551
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.