Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009369.1

Orthogroup ID

OG0002350

Physical Location & Seq

Genomic Coordinates Forward (+)

12997 .. 17221

Gene Structure 4225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009369.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgaccacctccttcgcctcctccacctgtccatccattccacatctccttcaccacttccacatagctcatacttttccccgatctactttagccaccgacgtttccactcctctgtctccaccttcccacttgaaagcaggcaagaagatgcttgggtggttgctcctccttgagcaatgtcatggatgtgcctacttctctatataccagaccaaacacaaaaccttaagtctatatgtacttcaaaagcctctagatcgtgaactattttctctccctccgctgcaaatctcgtatcacacaaaaattaacttaatggagtcgaaccaagccaatcccagcatactgtgccgcccagaaggctctcagagaaccctgtacccatatgtcactggtacttctgtagttgctctcaagtacaaagatgggattttgatggctgctgatatgggaggttcatatggatctaccctgcggtacaagagtgtggaacgaatgaagcctattggaaaacattctcttcttggtgcaagtggagaaataagtgatttccaggagttgttaaaatatcttgatgagcttgtcctatatgacaacatgtgggatgatgggaactctttgggacctaaagagatccacaactatttgacccgtgtgatgtacaatcgccgtaacaagttcaacccactgtggaattcacttgtccttggtggagtgaaaaacggagagaaataccttggaatggttagtatgataggtgtaaattttgaggacaaccatgttgctaccggatttgggaatcaccttgcaaggcctattcttcgtgatgagtggcgtgaggacttgagtttcgaagaaggcgtgaagctgctggagaagtgcatgcgtgtccttctgtaccgtgataggtctgctgtcaacaagcttcagatagctaagatcactggagaaggtgtaacaatctctcaaccctactctttgaagactttctggggattctctgctttccaaaatccaactgccggtgctgaaggatcatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0019774 GO:0022626 GO:0032991 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

348

Amino Acids

39.18

Weight (kDa)

8.9

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56450
fragaria_vesca	FvH4_3g33020 FvH4_3g33020 FvH4_7g08240 FvH4_7g09770
malus_domestica	MD02G1138100.v1.1 MD03G1112600.v1.1 MD11G1131600.v1.1 MD15G1251900.v1.1
prunus_persica	Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.1G563400_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.4G283100_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1 Prupe.6G096800_v2.0.a1
pyrus_communis	pycom02g10950 pycom11g10870
rosa_chinensis	RchiOBHm_Chr1g0346771 RchiOBHm_Chr5g0060341
rosa_laevigata	RLG00000028779 RLG00000035357
rosa_multiflora	Rmu_sc0003232.1_g000008 Rmu_sc0003232.1_g000009 Rmu_sc0009369.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020450 Rroxscaffold_4G00308430
rosa_rugosa	Rorug01G0182900 Rorug01G0183700 Rorug05G0328900
rosa_samantha	Rh1BG167500 Rh1CG186000 Rh1DG198300 Rh5AG393700 Rh5BG406300 Rh5CG430100 Rh5DG007900 Rh5DG421000
rosa_wichuraiana	Rw1G016880 Rw5G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	284, 355, 478
AclWI	GGATC	3 cut(s)	475, 631, 1045
AcsI	RAATTY	2 cut(s)	697, 766
AcuI	CTGAAG	1 cut(s)	914
AfaI	GTAC	7 cut(s)	243, 383, 400, 422, 482, 665, 902
AfiI	CCNNNNNNNGG	3 cut(s)	745, 798, 1025
AflII	CTTAAG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	4 cut(s)	136, 248, 685, 985
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	5 cut(s)	68, 583, 871, 928, 938
AluI	AGCT	5 cut(s)	68, 583, 871, 928, 938
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	3 cut(s)	475, 631, 1045
AoxI	GGCC	1 cut(s)	815
ApeKI	GCWGC	3 cut(s)	286, 443, 871
ApoI	RAATTY	2 cut(s)	697, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	836, 868
Asp700I	GAANNNNTTC	2 cut(s)	517, 989
AspS9I	GGNCC	1 cut(s)	626
AsuHPI	GGTGA	2 cut(s)	44, 797
AsuII	TTCGAA	1 cut(s)	855
AvaII	GGWCC	1 cut(s)	626
BaeI	ACNNNNGTAYC	4 cut(s)	390, 423, 472, 505
BbsI	GAAGAC	1 cut(s)	992
BbvI	GCAGC	3 cut(s)	273, 430, 858
BccI	CCATC	4 cut(s)	40, 422, 433, 605
BceAI	ACGGC	1 cut(s)	657
BciT130I	CCWGG	1 cut(s)	557
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	405
BfrI	CTTAAG	1 cut(s)	229
BglI	GCCNNNNNGGC	1 cut(s)	363
BisI	GCNGC	4 cut(s)	287, 355, 444, 872
BlsI	GCNGC	4 cut(s)	288, 356, 445, 873
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	1 cut(s)	627
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	992
BpmI	CTGGAG	2 cut(s)	896, 969
Bpu14I	TTCGAA	1 cut(s)	855
BpuEI	CTTGAG	3 cut(s)	194, 401, 868
BsaJI	CCNNGG	2 cut(s)	709, 739
BsaWI	WCCGGW	1 cut(s)	791
BsaXI	ACNNNNNCTCC	2 cut(s)	942, 972
Bsc4I	CCNNNNNNNGG	3 cut(s)	745, 798, 1025
Bse118I	RCCGGY	1 cut(s)	1025
Bse1I	ACTGG	2 cut(s)	400, 952
Bse3DI	GCAATG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	2 cut(s)	709, 739
BseGI	GGATG	3 cut(s)	32, 194, 613
BseLI	CCNNNNNNNGG	3 cut(s)	745, 798, 1025
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	400, 952
BseRI	GAGGAG	3 cut(s)	10, 102, 158
BseXI	GCAGC	3 cut(s)	273, 430, 858
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	1 cut(s)	817
BsiSI	CCGG	2 cut(s)	792, 1026
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	3 cut(s)	745, 798, 1025
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	639
BsnI	GGCC	1 cut(s)	817
Bsp119I	TTCGAA	1 cut(s)	855
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	6 cut(s)	83, 259, 467, 636, 942, 1037
BspACI	CCGC	3 cut(s)	284, 355, 478
BspANI	GGCC	1 cut(s)	817
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	627
BspPI	GGATC	3 cut(s)	475, 631, 1045
BspT104I	TTCGAA	1 cut(s)	855
BspTI	CTTAAG	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	1025
BsrGI	TGTACA	1 cut(s)	663
BsrI	ACTGG	2 cut(s)	400, 952
BssAI	RCCGGY	1 cut(s)	1025
BssECI	CCNNGG	2 cut(s)	709, 739
BssMI	GATC	6 cut(s)	83, 259, 467, 636, 942, 1037
BssT1I	CCWWGG	2 cut(s)	709, 739
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	3 cut(s)	351, 693, 905
Bst6I	CTCTTC	1 cut(s)	528
BstAFI	CTTAAG	1 cut(s)	229
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstAUI	TGTACA	1 cut(s)	663
BstBI	TTCGAA	1 cut(s)	855
BstC8I	GCNNGC	2 cut(s)	142, 887
BstDEI	CTNAG	2 cut(s)	369, 939
BstF5I	GGATG	3 cut(s)	32, 194, 613
BstKTI	GATC	6 cut(s)	86, 262, 470, 639, 945, 1040
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	6 cut(s)	83, 259, 467, 636, 942, 1037
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 363
BstNI	CCWGG	1 cut(s)	557
BstNSI	RCATGY	2 cut(s)	604, 889
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	3 cut(s)	273, 430, 858
BstV2I	GAAGAC	1 cut(s)	992
BstX2I	RGATCY	2 cut(s)	467, 636
BstYI	RGATCY	2 cut(s)	467, 636
BsuRI	GGCC	1 cut(s)	817
BtsCI	GGATG	3 cut(s)	32, 194, 613
BtsIMutI	CAGTG	3 cut(s)	393, 689, 945
Cac8I	GCNNGC	2 cut(s)	142, 887
Cfr10I	RCCGGY	1 cut(s)	1025
Cfr13I	GGNCC	1 cut(s)	626
Csp6I	GTAC	7 cut(s)	242, 382, 399, 421, 481, 664, 901
CviAII	CATG	5 cut(s)	185, 601, 782, 886, 1041
CviQI	GTAC	7 cut(s)	242, 382, 399, 421, 481, 664, 901
DdeI	CTNAG	2 cut(s)	369, 939
DpnI	GATC	6 cut(s)	85, 261, 469, 638, 944, 1039
DpnII	GATC	6 cut(s)	83, 259, 467, 636, 942, 1037
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	2 cut(s)	709, 739
Eco147I	AGGCCT	1 cut(s)	817
Eco47I	GGWCC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	914
EcoO109I	RGGNCCY	1 cut(s)	626
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	2 cut(s)	709, 739
ErhI	CCWWGG	2 cut(s)	709, 739
FaeI	CATG	5 cut(s)	188, 604, 785, 889, 1044
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	5 cut(s)	184, 600, 781, 885, 1040
FauNDI	CATATG	2 cut(s)	388, 463
Fnu4HI	GCNGC	4 cut(s)	287, 355, 444, 872
FokI	GGATG	3 cut(s)	19, 201, 620
Fsp4HI	GCNGC	4 cut(s)	287, 355, 444, 872
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	4 cut(s)	287, 355, 444, 872
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	2 cut(s)	896, 969
HaeIII	GGCC	1 cut(s)	817
HapII	CCGG	2 cut(s)	792, 1026
Hin1II	CATG	5 cut(s)	188, 604, 785, 889, 1044
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HindIII	AAGCTT	1 cut(s)	926
HinfI	GANTC	3 cut(s)	323, 802, 999
HpaII	CCGG	2 cut(s)	792, 1026
HphI	GGTGA	2 cut(s)	44, 797
Hpy166II	GTNNAC	2 cut(s)	266, 922
Hpy188I	TCNGA	2 cut(s)	372, 933
Hpy188III	TCNNGA	4 cut(s)	257, 263, 575, 827
Hpy8I	GTNNAC	2 cut(s)	266, 922
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	8 cut(s)	22, 59, 135, 356, 854, 905, 947, 1028
HpyCH4III	ACNGT	3 cut(s)	351, 693, 905
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	289, 533, 812, 885
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 363
HpyF3I	CTNAG	2 cut(s)	369, 939
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	188, 604, 785, 889, 1044
Kzo9I	GATC	6 cut(s)	83, 259, 467, 636, 942, 1037
LmnI	GCTCC	1 cut(s)	171
Lsp1109I	GCAGC	3 cut(s)	273, 430, 858
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	391, 674, 958
MalI	GATC	6 cut(s)	85, 261, 469, 638, 944, 1039
MboI	GATC	6 cut(s)	83, 259, 467, 636, 942, 1037
MboII	GAAGA	5 cut(s)	160, 515, 815, 869, 997
MflI	RGATCY	2 cut(s)	467, 636
MluCI	AATT	3 cut(s)	309, 697, 766
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	1043
MroXI	GAANNNNTTC	2 cut(s)	517, 989
MseI	TTAA	4 cut(s)	230, 312, 317, 566
MslI	CAYNNNNRTG	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	286
MspCI	CTTAAG	1 cut(s)	229
MspI	CCGG	2 cut(s)	792, 1026
MspR9I	CCNGG	1 cut(s)	557
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	351, 363
NdeI	CATATG	2 cut(s)	388, 463
NdeII	GATC	6 cut(s)	83, 259, 467, 636, 942, 1037
NlaIII	CATG	5 cut(s)	188, 604, 785, 889, 1044
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	2 cut(s)	604, 889
NspV	TTCGAA	1 cut(s)	855
PaeI	GCATGC	1 cut(s)	889
PceI	AGGCCT	1 cut(s)	817
PciI	ACATGT	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	861
PdmI	GAANNNNTTC	2 cut(s)	517, 989
PfeI	GAWTC	2 cut(s)	802, 999
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	4 cut(s)	288, 356, 445, 873
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	626
PscI	ACATGT	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	626
PspPPI	RGGWCCY	1 cut(s)	626
PsuI	RGATCY	2 cut(s)	467, 636
RsaI	GTAC	7 cut(s)	243, 383, 400, 422, 482, 665, 902
RsaNI	GTAC	7 cut(s)	242, 382, 399, 421, 481, 664, 901
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	4 cut(s)	230, 312, 317, 566
SatI	GCNGC	4 cut(s)	287, 355, 444, 872
Sau3AI	GATC	6 cut(s)	83, 259, 467, 636, 942, 1037
Sau96I	GGNCC	1 cut(s)	626
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	557
SfaNI	GCATC	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	405
SfuI	TTCGAA	1 cut(s)	855
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	4 cut(s)	173, 229, 416, 847
SmoI	CTYRAG	4 cut(s)	173, 229, 416, 847
SphI	GCATGC	1 cut(s)	889
Sse9I	AATT	3 cut(s)	309, 697, 766
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	3 cut(s)	284, 355, 478
SspMI	CTAG	1 cut(s)	257
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	2 cut(s)	709, 739
TaaI	ACNGT	3 cut(s)	351, 693, 905
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	326, 855
TasI	AATT	3 cut(s)	309, 697, 766
TatI	WGTACW	3 cut(s)	241, 420, 663
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	802, 999
Tru1I	TTAA	4 cut(s)	230, 312, 317, 566
Tru9I	TTAA	4 cut(s)	230, 312, 317, 566
TscAI	CASTG	3 cut(s)	400, 696, 952
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	3 cut(s)	286, 443, 871
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	2 cut(s)	450, 515
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	3 cut(s)	400, 696, 952
Vha464I	CTTAAG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	2 cut(s)	697, 766
XbaI	TCTAGA	1 cut(s)	256
XceI	RCATGY	2 cut(s)	604, 889
XmnI	GAANNNNTTC	2 cut(s)	517, 989
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.