Rorug04G0090900

AarF domain-containing protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0018490
Physical Location & Seq
Reverse (-)
14087313 .. 14090199
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0090900.1

Sequence Viewer

Length: 711 bp
ATGTCGTTGGGGTATAATAATTTTGCAAAGAACGGGAAATCAGATTCTGGGTCATCCGATTCTCTGGATAGCTTATTTGGCGACAAAGATGCAAGCAGTGCTCTGGAAGTTTCTAGTATCATTCAACCAAAAGAGGCTGATTACCCATGTTGTTGCCTATCAGTTGAAGATGCTCCAATCAATGACTTGGTAGATTTTATCATTGCTTCTCAGATATCTGTGAAACTTGAGAATGAGCACAACTGCCATATCTATAGGGTGGTGTTGATGTCTGCAACTGCTGATATTGGAAGGTCACTTATTGTCAATTTGGCAACCGCTAACTGCTACAAAGTTGAGCATTTGAAAAGACCAGAAAACTGGGCATTAGTTGAGAAGGCCAAGTACATCTATGTTGCTGGTTTTTTCTCAACTGTATATCCAGAATCCATTCAGCTTGTTACTGAACATGTAGCTGCAAATAACAAGGTTTTCAGCATGAACCTTTCTACCCCATTTATCTGTGAATTTTTCAAGGATGTCCAGGAGAAAGCTAGCTGTGCCCTGCTCAACGAGCCTAAAACAATGGTTGATTGTTGCTCATTTGACATTATTTTTGGCAGAAAATGCATCTATCTTGCTGAAGAGAGTTACTACAAATTAATGGGCCTGAAGATGATGTACAGGCTTGTGATTCCTTACAGGCTTACACAACAGTGCCATGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

236

Amino Acids

26.5

Weight (kDa)

5.53

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 90 - 181 1.8e-09 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018490)

Species Orthologous Gene IDs
malus_domestica MD15G1044600.v1.1
rosa_chinensis RchiOBHm_Chr4g0400831
rosa_laevigata RLG00000022624
rosa_multiflora Rmu_co8395409.1_g000001 Rmu_sc0002701.1_g000020
rosa_roxburghii Rroxscaffold_1G00024720
rosa_rugosa Rorug01G0183700 Rorug04G0090900 Rorug05G0207800
rosa_samantha Rh6AG235800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 318
AcsI RAATTY 1 cut(s) 506
AcuI CTGAAG 2 cut(s) 642, 671
AfaI GTAC 2 cut(s) 386, 662
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 4 cut(s) 125, 167, 346, 514
AjnI CCWGG 1 cut(s) 522
AleI CACNNNNGTG 1 cut(s) 694
AluBI AGCT 5 cut(s) 72, 436, 455, 533, 537
AluI AGCT 5 cut(s) 72, 436, 455, 533, 537
Alw21I GWGCWC 2 cut(s) 103, 240
AlwNI CAGNNNCTG 1 cut(s) 47
AoxI GGCC 2 cut(s) 378, 646
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 506
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
AseI ATTAAT 1 cut(s) 641
Asp700I GAANNNNTTC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 646
AsuNHI GCTAGC 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 544
BarI GAAGNNNNNNTAC 4 cut(s) 368, 400, 644, 676
Bbv12I GWGCWC 2 cut(s) 103, 240
BbvI GCAGC 1 cut(s) 442
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 1 cut(s) 524
BfaI CTAG 2 cut(s) 114, 534
BfmI CTRYAG 1 cut(s) 253
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 646
BmrFI CCNGG 1 cut(s) 524
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 3 cut(s) 79, 160, 618
BmtI GCTAGC 1 cut(s) 537
BmuI ACTGGG 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 524
BseGI GGATG 2 cut(s) 53, 523
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 1 cut(s) 442
BshFI GGCC 2 cut(s) 380, 648
BsiHKAI GWGCWC 2 cut(s) 103, 240
BsnI GGCC 2 cut(s) 380, 648
Bsp1286I GDGCHC 3 cut(s) 103, 240, 544
Bsp1407I TGTACA 1 cut(s) 660
BspACI CCGC 1 cut(s) 318
BspANI GGCC 2 cut(s) 380, 648
BspCNI CTCAG 1 cut(s) 223
BspOI GCTAGC 1 cut(s) 537
BsrDI GCAATG 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 2 cut(s) 415, 696
Bst6I CTCTTC 1 cut(s) 618
BstAPI GCANNNNNTGC 2 cut(s) 98, 606
BstAUI TGTACA 1 cut(s) 660
BstC8I GCNNGC 2 cut(s) 94, 535
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 53, 523
BstMWI GCNNNNNNNGC 5 cut(s) 78, 98, 539, 553, 606
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 522
BstSFI CTRYAG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 544
BstV1I GCAGC 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 360
BsuRI GGCC 2 cut(s) 380, 648
BtsCI GGATG 2 cut(s) 53, 523
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 3 cut(s) 103, 701, 706
Cac8I GCNNGC 2 cut(s) 94, 535
CaiI CAGNNNCTG 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 646
Csp6I GTAC 2 cut(s) 385, 661
CviAII CATG 4 cut(s) 147, 449, 478, 701
CviQI GTAC 2 cut(s) 385, 661
DdeI CTNAG 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco32I GATATC 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 642, 671
EcoRII CCWGG 1 cut(s) 522
EcoRV GATATC 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 611
FaeI CATG 4 cut(s) 150, 452, 481, 704
FaiI YATR 9 cut(s) 15, 148, 249, 255, 393, 418, 450, 479, 702
FatI CATG 4 cut(s) 146, 448, 477, 700
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 2 cut(s) 40, 530
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 2 cut(s) 114, 534
GluI GCNGC 1 cut(s) 456
HaeIII GGCC 2 cut(s) 380, 648
Hin1II CATG 4 cut(s) 150, 452, 481, 704
HinfI GANTC 4 cut(s) 44, 59, 425, 673
Hpy188I TCNGA 3 cut(s) 43, 58, 213
Hpy188III TCNNGA 3 cut(s) 65, 104, 422
HpyAV CCTTC 2 cut(s) 285, 370
HpyCH4III ACNGT 2 cut(s) 415, 696
HpyCH4V TGCA 5 cut(s) 26, 92, 275, 458, 609
HpyF10VI GCNNNNNNNGC 5 cut(s) 78, 98, 539, 553, 606
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 4 cut(s) 150, 452, 481, 704
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 3 cut(s) 79, 160, 618
MaeI CTAG 2 cut(s) 114, 534
MaeIII GTNAC 3 cut(s) 294, 439, 629
MboII GAAGA 3 cut(s) 179, 635, 664
MhlI GDGCHC 3 cut(s) 103, 240, 544
MluCI AATT 4 cut(s) 19, 307, 506, 638
MnlI CCTC 1 cut(s) 127
Mph1103I ATGCAT 1 cut(s) 611
MroXI GAANNNNTTC 1 cut(s) 429
MseI TTAA 1 cut(s) 641
MslI CAYNNNNRTG 1 cut(s) 694
MspR9I CCNGG 1 cut(s) 524
MvaI CCWGG 1 cut(s) 524
MwoI GCNNNNNNNGC 5 cut(s) 78, 98, 539, 553, 606
NheI GCTAGC 1 cut(s) 533
NlaIII CATG 4 cut(s) 150, 452, 481, 704
NmuCI GTSAC 1 cut(s) 294
NsiI ATGCAT 1 cut(s) 611
NspI RCATGY 1 cut(s) 452
OliI CACNNNNGTG 1 cut(s) 694
PciI ACATGT 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 429
PfeI GAWTC 4 cut(s) 44, 59, 425, 673
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 1 cut(s) 457
PscI ACATGT 1 cut(s) 448
PshBI ATTAAT 1 cut(s) 641
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspPI GGNCC 1 cut(s) 646
PstNI CAGNNNCTG 1 cut(s) 47
RsaI GTAC 2 cut(s) 386, 662
RsaNI GTAC 2 cut(s) 385, 661
RseI CAYNNNNRTG 1 cut(s) 694
SaqAI TTAA 1 cut(s) 641
SatI GCNGC 1 cut(s) 456
Sau96I GGNCC 1 cut(s) 646
ScrFI CCNGG 1 cut(s) 524
SduI GDGCHC 3 cut(s) 103, 240, 544
SetI ASST 8 cut(s) 74, 296, 438, 457, 471, 486, 535, 539
SfaNI GCATC 3 cut(s) 79, 160, 618
SfcI CTRYAG 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 694
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 4 cut(s) 19, 307, 506, 638
SsiI CCGC 1 cut(s) 318
SspMI CTAG 2 cut(s) 114, 534
StyD4I CCNGG 1 cut(s) 522
TaaI ACNGT 2 cut(s) 415, 696
TasI AATT 4 cut(s) 19, 307, 506, 638
TatI WGTACW 2 cut(s) 384, 660
TfiI GAWTC 4 cut(s) 44, 59, 425, 673
Tru1I TTAA 1 cut(s) 641
Tru9I TTAA 1 cut(s) 641
TscAI CASTG 2 cut(s) 103, 701
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 1 cut(s) 494
TspRI CASTG 2 cut(s) 103, 701
VspI ATTAAT 1 cut(s) 641
XapI RAATTY 1 cut(s) 506
XceI RCATGY 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 429
XspI CTAG 2 cut(s) 114, 534
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.