Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002859.1

Orthogroup ID

OG0007341

Physical Location & Seq

Genomic Coordinates Reverse (-)

19010 .. 20449

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002859.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

atggacatggagtcccaaaaccaccaaatccctccaacccaaaagcctcctcatcccattcccgagtcatcgccacaacccagttttccagccaaacttgcccaccagctgaaattcaatctcattttccggtccaaatgggccgagttgaacggtgcaatgggcgacttaggcacctacatcccaatcgtagtggcctcaacactagccagagacttgaacttgggcaccaccttgatcttcaccggaatctacaacatcatcaccggagccatctacggcgttcccatgccggtccaacctatgaaggccattgccgccacagccctggccaacccagatttcggcatccccgaaatcatggccgccggaatcctaaccggtagcaccctcatcgttttgggtgccactggtttgatgcaactggtctataagttgatccctttgtgtgtggtcaggggagttcaactggcacagggattgtcatttgcgttaaccgcggtcaagtacattaagaaggtgcaaaacttgcccaaatccaaagccatgggggagaggcactggtttgggttggatggtttggtgttggctattgtttgtctttgtttcatagtcattgttaatggtgcaggtgaggaatatcatccagtgagggaaggtgaagttgaggttgaagaagaaagacctagcagaaaaaagaggtggaggaaaatcatagcttcactcccttcggcttttttaatttttgtgttgggttcgattctggcttttataagaaagccaaatgttgtgcatgaaattaaattcgggccatctcctatggaggttgtgaagattagtaggcatgcatggaaagatgggttcatcaaagggacaattccacaactgcccctgtcaatattgaactcagtgattgctgtgtgcaaattgtcctctgatcttttcccagataaagatttctctcccacatcaatttcgatcacggttgggctgatgaacgtggtgggtagttggttcggagccatgcccagttgtcacggggccggcgggttggccggccagtacaagtttggggggaggagtggggggtgtgtggcactactagggtcagccaaattggtgttgggtttggctttagggacttctttggtgaccattttgaaccaatttccagttggggttttgggggtgttgctcttgtttgctgggattgaactggctatgtgtgctagggacatgcatactaaagaagagtcctttgtgatgcttatttgcactgcagtttcactagtgggttcgagtgcagcactaggatttgtggtggggatgggtgtgtatgttctactttggctgagaaggttgggctgcaaaggcaaacctaattggaagatatggaagcatggtcgaaccatagtagaaaattatgatcacaacccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

479

Amino Acids

51.63

Weight (kDa)

9.35

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25680
fragaria_vesca	FvH4_2g30230
malus_domestica	MD08G1135400.v1.1
prunus_persica	Prupe.1G465500_v2.0.a1
pyrus_communis	pycom08g11440
rosa_chinensis	RchiOBHm_Chr4g0397011 RchiOBHm_Chr6g0312651
rosa_laevigata	RLG00000009458 RLG00000009459 RLG00000010307
rosa_multiflora	Rmu_sc0002859.1_g000003 Rmu_sc0002963.1_g000005 Rmu_ssc0000412.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342030
rosa_rugosa	Rorug03G0345500 Rorug06G0398100
rosa_samantha	Rh4AG076100 Rh4BG072600 Rh4CG080800 Rh4DG070100 Rh6AG515400 Rh6BG526700 Rh6DG517700
rosa_wichuraiana	Rw4G006110 Rw6G044780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	773
AarI	CACCTGC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	620
AccB1I	GGYRCC	3 cut(s)	173, 227, 404
AccII	CGCG	1 cut(s)	500
AciI	CCGC	5 cut(s)	318, 366, 498, 500, 1047
AclWI	GGATC	1 cut(s)	433
AcoI	YGGCCR	4 cut(s)	330, 363, 1053, 1057
AcsI	RAATTY	2 cut(s)	113, 803
AfaI	GTAC	2 cut(s)	509, 1064
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	8 cut(s)	118, 151, 220, 467, 674, 904, 1162, 1214
AhdI	GACNNNNNGTC	1 cut(s)	10
AhlI	ACTAGT	1 cut(s)	1288
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	2 cut(s)	109, 719
AluI	AGCT	2 cut(s)	109, 719
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	433
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	9 cut(s)	141, 195, 309, 330, 363, 809, 1041, 1053, 1057
ApeKI	GCWGC	2 cut(s)	1304, 1365
ApoI	RAATTY	2 cut(s)	113, 803
AsiGI	ACCGGT	1 cut(s)	380
AspS9I	GGNCC	5 cut(s)	132, 141, 295, 809, 1041
AsuHPI	GGTGA	5 cut(s)	235, 256, 644, 671, 1162
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	132, 295
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	3 cut(s)	173, 227, 404
BbvI	GCAGC	2 cut(s)	1316, 1352
BccI	CCATC	5 cut(s)	281, 569, 820, 851, 1321
BceAI	ACGGC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BciT130I	CCWGG	1 cut(s)	329
BclI	TGATCA	1 cut(s)	1426
BcoDI	GTCTC	1 cut(s)	207
BcuI	ACTAGT	1 cut(s)	1288
BfaI	CTAG	6 cut(s)	206, 687, 1103, 1230, 1289, 1310
BfmI	CTRYAG	1 cut(s)	1278
BfuAI	ACCTGC	1 cut(s)	620
BisI	GCNGC	4 cut(s)	318, 366, 1305, 1366
BlsI	GCNGC	4 cut(s)	319, 367, 1306, 1367
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	2 cut(s)	132, 295
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	5 cut(s)	132, 141, 295, 809, 1041
BmiI	GGNNCC	6 cut(s)	175, 229, 271, 406, 1021, 1042
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	2 cut(s)	75, 1023
BmsI	GCATC	3 cut(s)	357, 408, 1254
BmuI	ACTGGG	2 cut(s)	75, 1023
BsaJI	CCNNGG	3 cut(s)	327, 498, 546
BsaWI	WCCGGW	4 cut(s)	129, 245, 266, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse118I	RCCGGY	4 cut(s)	292, 380, 1043, 1055
Bse3DI	GCAATG	2 cut(s)	165, 312
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	3 cut(s)	327, 498, 546
BseGI	GGATG	6 cut(s)	52, 180, 348, 580, 643, 1332
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	2 cut(s)	165, 312
BseMII	CTCAG	2 cut(s)	921, 1343
BseRI	GAGGAG	2 cut(s)	39, 1093
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	1316, 1352
BseYI	CCCAGC	1 cut(s)	1205
BsgI	GTGCAG	2 cut(s)	648, 1323
Bsh1236I	CGCG	1 cut(s)	500
BshFI	GGCC	9 cut(s)	143, 197, 311, 332, 365, 811, 1043, 1055, 1059
BshNI	GGYRCC	3 cut(s)	173, 227, 404
BshTI	ACCGGT	1 cut(s)	380
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	8 cut(s)	130, 246, 267, 293, 369, 381, 1044, 1056
BslFI	GGGAC	3 cut(s)	886, 1153, 1247
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	3 cut(s)	886, 1153, 1247
BsnI	GGCC	9 cut(s)	143, 197, 311, 332, 365, 811, 1043, 1055, 1059
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	5 cut(s)	237, 438, 937, 978, 1426
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	5 cut(s)	318, 366, 498, 500, 1047
BspANI	GGCC	9 cut(s)	143, 197, 311, 332, 365, 811, 1043, 1055, 1059
BspCNI	CTCAG	2 cut(s)	920, 1344
BspFNI	CGCG	1 cut(s)	500
BspLI	GGNNCC	6 cut(s)	175, 229, 271, 406, 1021, 1042
BspMAI	CTGCAG	1 cut(s)	1282
BspMI	ACCTGC	1 cut(s)	620
BspPI	GGATC	1 cut(s)	433
BspT107I	GGYRCC	3 cut(s)	173, 227, 404
BsrDI	GCAATG	2 cut(s)	165, 312
BsrFI	RCCGGY	4 cut(s)	292, 380, 1043, 1055
BssAI	RCCGGY	4 cut(s)	292, 380, 1043, 1055
BssECI	CCNNGG	3 cut(s)	327, 498, 546
BssMI	GATC	5 cut(s)	237, 438, 937, 978, 1426
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	155, 985
Bst6I	CTCTTC	1 cut(s)	1245
BstAPI	GCANNNNNTGC	1 cut(s)	529
BstC8I	GCNNGC	3 cut(s)	846, 1045, 1057
BstDEI	CTNAG	3 cut(s)	169, 907, 1352
BstDSI	CCRYGG	2 cut(s)	498, 546
BstEII	GGTNACC	1 cut(s)	1150
BstF5I	GGATG	6 cut(s)	52, 180, 348, 580, 643, 1332
BstFNI	CGCG	1 cut(s)	500
BstKTI	GATC	5 cut(s)	240, 441, 940, 981, 1429
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	5 cut(s)	237, 438, 937, 978, 1426
BstMWI	GCNNNNNNNGC	8 cut(s)	98, 171, 317, 323, 497, 529, 1226, 1371
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	2 cut(s)	848, 1240
BstPI	GGTNACC	1 cut(s)	1150
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	1278
BstSLI	GKGCMC	1 cut(s)	230
BstUI	CGCG	1 cut(s)	500
BstV1I	GCAGC	2 cut(s)	1316, 1352
BstXI	CCANNNNNNTGG	2 cut(s)	328, 547
BsuRI	GGCC	9 cut(s)	143, 197, 311, 332, 365, 811, 1043, 1055, 1059
BtgI	CCRYGG	2 cut(s)	498, 546
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	6 cut(s)	52, 180, 348, 580, 643, 1332
BtsI	GCAGTG	1 cut(s)	1275
BtsIMutI	CAGTG	5 cut(s)	408, 559, 654, 915, 1275
BveI	ACCTGC	1 cut(s)	620
Cac8I	GCNNGC	3 cut(s)	846, 1045, 1057
Cfr10I	RCCGGY	4 cut(s)	292, 380, 1043, 1055
Cfr13I	GGNCC	5 cut(s)	132, 141, 295, 809, 1041
Cfr42I	CCGCGG	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	508, 1063
CspAI	ACCGGT	1 cut(s)	380
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviQI	GTAC	2 cut(s)	508, 1063
DdeI	CTNAG	3 cut(s)	169, 907, 1352
DpnI	GATC	5 cut(s)	239, 440, 939, 980, 1428
DpnII	GATC	5 cut(s)	237, 438, 937, 978, 1426
DriI	GACNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	4 cut(s)	330, 363, 1053, 1057
Eam1104I	CTCTTC	1 cut(s)	1245
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	1245
Eco130I	CCWWGG	1 cut(s)	546
Eco47I	GGWCC	2 cut(s)	132, 295
Eco88I	CYCGRG	1 cut(s)	62
Eco91I	GGTNACC	1 cut(s)	1150
EcoO65I	GGTNACC	1 cut(s)	1150
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	546
EcoT22I	ATGCAT	2 cut(s)	850, 1242
ErhI	CCWWGG	1 cut(s)	546
FaqI	GGGAC	3 cut(s)	886, 1153, 1247
FauI	CCCGC	1 cut(s)	1040
FbaI	TGATCA	1 cut(s)	1426
Fnu4HI	GCNGC	4 cut(s)	318, 366, 1305, 1366
FokI	GGATG	6 cut(s)	39, 167, 335, 587, 630, 1339
FseI	GGCCGGCC	1 cut(s)	1059
Fsp4HI	GCNGC	4 cut(s)	318, 366, 1305, 1366
FspBI	CTAG	6 cut(s)	206, 687, 1103, 1230, 1289, 1310
GluI	GCNGC	4 cut(s)	318, 366, 1305, 1366
GsaI	CCCAGC	1 cut(s)	1209
HaeIII	GGCC	9 cut(s)	143, 197, 311, 332, 365, 811, 1043, 1055, 1059
HapII	CCGG	8 cut(s)	130, 246, 267, 293, 369, 381, 1044, 1056
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HinfI	GANTC	6 cut(s)	11, 65, 249, 372, 760, 1253
HpaI	GTTAAC	1 cut(s)	495
HpaII	CCGG	8 cut(s)	130, 246, 267, 293, 369, 381, 1044, 1056
HphI	GGTGA	5 cut(s)	235, 256, 644, 671, 1162
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	2 cut(s)	937, 1019
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	495
HpyAV	CCTTC	5 cut(s)	301, 511, 650, 738, 1350
HpyCH4III	ACNGT	2 cut(s)	155, 985
HpyCH4IV	ACGT	1 cut(s)	999
HpyF10VI	GCNNNNNNNGC	8 cut(s)	98, 171, 317, 323, 497, 529, 1226, 1371
HpyF3I	CTNAG	3 cut(s)	169, 907, 1352
HpySE526I	ACGT	1 cut(s)	999
KroI	GCCGGC	2 cut(s)	1043, 1055
KroNI	GCCGGC	2 cut(s)	1045, 1057
Ksp22I	TGATCA	1 cut(s)	1426
KspAI	GTTAAC	1 cut(s)	495
KspI	CCGCGG	1 cut(s)	501
Kzo9I	GATC	5 cut(s)	237, 438, 937, 978, 1426
LmnI	GCTCC	2 cut(s)	269, 1019
Lsp1109I	GCAGC	2 cut(s)	1316, 1352
LweI	GCATC	3 cut(s)	357, 408, 1254
MaeI	CTAG	6 cut(s)	206, 687, 1103, 1230, 1289, 1310
MaeII	ACGT	1 cut(s)	999
MaeIII	GTNAC	2 cut(s)	1034, 1150
MalI	GATC	5 cut(s)	239, 440, 939, 980, 1428
MboI	GATC	5 cut(s)	237, 438, 937, 978, 1426
MboII	GAAGA	6 cut(s)	232, 686, 689, 844, 1262, 1399
MhlI	GDGCHC	1 cut(s)	230
MlsI	TGGCCA	1 cut(s)	332
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	3 cut(s)	20, 74, 1262
MmeI	TCCRAC	3 cut(s)	59, 322, 552
Mox20I	TGGCCA	1 cut(s)	332
Mph1103I	ATGCAT	2 cut(s)	850, 1242
MroNI	GCCGGC	2 cut(s)	1043, 1055
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	5 cut(s)	494, 513, 621, 740, 801
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	2 cut(s)	109, 500
MspI	CCGG	8 cut(s)	130, 246, 267, 293, 369, 381, 1044, 1056
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	500
MwoI	GCNNNNNNNGC	8 cut(s)	98, 171, 317, 323, 497, 529, 1226, 1371
NaeI	GCCGGC	2 cut(s)	1045, 1057
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	5 cut(s)	237, 438, 937, 978, 1426
NgoMIV	GCCGGC	2 cut(s)	1043, 1055
NlaIV	GGNNCC	6 cut(s)	175, 229, 271, 406, 1021, 1042
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	1034, 1150
NsiI	ATGCAT	2 cut(s)	850, 1242
NspI	RCATGY	2 cut(s)	848, 1240
PaeI	GCATGC	1 cut(s)	848
PaqCI	CACCTGC	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PdiI	GCCGGC	2 cut(s)	1045, 1057
PfeI	GAWTC	3 cut(s)	249, 372, 760
PinAI	ACCGGT	1 cut(s)	380
PkrI	GCNGC	4 cut(s)	319, 367, 1306, 1367
PleI	GAGTC	3 cut(s)	19, 73, 1261
PpsI	GAGTC	3 cut(s)	19, 73, 1261
PsiI	TTATAA	1 cut(s)	773
Psp6I	CCWGG	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	1150
PspFI	CCCAGC	1 cut(s)	1205
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	6 cut(s)	175, 229, 271, 406, 1021, 1042
PspPI	GGNCC	5 cut(s)	132, 141, 295, 809, 1041
PstI	CTGCAG	1 cut(s)	1282
PvuII	CAGCTG	1 cut(s)	109
RigI	GGCCGGCC	1 cut(s)	1059
RsaI	GTAC	2 cut(s)	509, 1064
RsaNI	GTAC	2 cut(s)	508, 1063
SacII	CCGCGG	1 cut(s)	501
SaqAI	TTAA	5 cut(s)	494, 513, 621, 740, 801
SatI	GCNGC	4 cut(s)	318, 366, 1305, 1366
Sau3AI	GATC	5 cut(s)	237, 438, 937, 978, 1426
Sau96I	GGNCC	5 cut(s)	132, 141, 295, 809, 1041
SchI	GAGTC	3 cut(s)	20, 74, 1262
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	3 cut(s)	357, 408, 1254
SfcI	CTRYAG	1 cut(s)	1278
Sfr303I	CCGCGG	1 cut(s)	501
SgrBI	CCGCGG	1 cut(s)	501
SinI	GGWCC	2 cut(s)	132, 295
SpeI	ACTAGT	1 cut(s)	1288
SphI	GCATGC	1 cut(s)	848
SsiI	CCGC	5 cut(s)	318, 366, 498, 500, 1047
SspI	AATATT	1 cut(s)	900
SspMI	CTAG	6 cut(s)	206, 687, 1103, 1230, 1289, 1310
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	2 cut(s)	155, 985
TaiI	ACGT	1 cut(s)	1002
TaqI	TCGA	4 cut(s)	758, 977, 1298, 1405
TatI	WGTACW	2 cut(s)	507, 1062
TauI	GCSGC	2 cut(s)	320, 368
TfiI	GAWTC	3 cut(s)	249, 372, 760
Tru1I	TTAA	5 cut(s)	494, 513, 621, 740, 801
Tru9I	TTAA	5 cut(s)	494, 513, 621, 740, 801
TscAI	CASTG	5 cut(s)	415, 566, 654, 915, 1282
TseFI	GTSAC	2 cut(s)	1034, 1150
TseI	GCWGC	2 cut(s)	1304, 1365
Tsp45I	GTSAC	2 cut(s)	1034, 1150
TspDTI	ATGAA	5 cut(s)	320, 598, 810, 853, 1010
TspRI	CASTG	5 cut(s)	415, 566, 654, 915, 1282
VpaK11BI	GGWCC	2 cut(s)	132, 295
XapI	RAATTY	2 cut(s)	113, 803
XceI	RCATGY	2 cut(s)	848, 1240
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1067, 1120, 1172
XspI	CTAG	6 cut(s)	206, 687, 1103, 1230, 1289, 1310
Zsp2I	ATGCAT	2 cut(s)	850, 1242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.