Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007341

Physical Location & Seq

Genomic Coordinates Forward (+)

41772613 .. 41773053

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0345500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCTTTACCTACTAGATATGTTTTGTTTTTAACCGTGCTTCTTCTGTTAAAAACTACATGTGAAGCACAGATAGTCAAGCACAAAACTCATCTCCAGATCTCTAATTACATGGAGACTGAGCTCACTATTCATTGTAAATCCAAGGACAACGATATCGGTGTTAAGACACTGCCTCCTCAAGGCTCCTATGCGTTCAGCTTCCGACCAAACTTTTGGAACTCCACTCTATTCTTTTGCAAGTTCACCTGGAAGGATGGATCTCACTGGTTTGATATTTACGTACAAACCAGAGACCAACATTCATGCGTAAAGAACTGTAACTGGTTTGTTGTAAAGAATGGAAGTGGTGTGTGCCGGTTAATTGAAGGGGAGGCTCATTTGGTAGATATGTGCTACCCGTGGAACGATGCGTCTCATGCAGAATCAAGTCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

146

Amino Acids

16.95

Weight (kDa)

7.66

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	31 - 135	1.5e-25	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25680
fragaria_vesca	FvH4_2g30230
malus_domestica	MD08G1135400.v1.1
prunus_persica	Prupe.1G465500_v2.0.a1
pyrus_communis	pycom08g11440
rosa_chinensis	RchiOBHm_Chr4g0397011 RchiOBHm_Chr6g0312651
rosa_laevigata	RLG00000009458 RLG00000009459 RLG00000010307
rosa_multiflora	Rmu_sc0002859.1_g000003 Rmu_sc0002963.1_g000005 Rmu_ssc0000412.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342030
rosa_rugosa	Rorug03G0345500 Rorug06G0398100
rosa_samantha	Rh4AG076100 Rh4BG072600 Rh4CG080800 Rh4DG070100 Rh6AG515400 Rh6BG526700 Rh6DG517700
rosa_wichuraiana	Rw4G006110 Rw6G044780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	268
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	2 cut(s)	124, 201
AluI	AGCT	2 cut(s)	124, 201
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	3 cut(s)	110, 288, 420
AlwI	GGATC	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
AsuHPI	GGTGA	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	250
BcoDI	GTCTC	3 cut(s)	110, 288, 420
BfaI	CTAG	1 cut(s)	15
BglII	AGATCT	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	400
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	144, 401
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	2 cut(s)	272, 329
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	144, 401
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	272, 329
BseRI	GAGGAG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	3 cut(s)	110, 288, 420
BsmBI	CGTCTC	1 cut(s)	420
Bso31I	GGTCTC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	99, 260
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	2 cut(s)	272, 329
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	144, 401
BssMI	GATC	2 cut(s)	99, 260
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	37, 320
BstBAI	YACGTR	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	401
BstENI	CCTNNNNNAGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	2 cut(s)	102, 263
BstMAI	GTCTC	3 cut(s)	110, 288, 420
BstMBI	GATC	2 cut(s)	99, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	1 cut(s)	250
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	248
BstSNI	TACGTA	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	99, 260
BstXI	CCANNNNNNTGG	1 cut(s)	216
BstYI	RGATCY	2 cut(s)	99, 260
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	170, 265
Cfr10I	RCCGGY	1 cut(s)	357
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	4 cut(s)	60, 112, 306, 419
CviJI	RGCY	5 cut(s)	5, 124, 186, 201, 377
CviKI_1	RGCY	5 cut(s)	5, 124, 186, 201, 377
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	2 cut(s)	101, 262
DpnII	GATC	2 cut(s)	99, 260
Ecl136II	GAGCTC	1 cut(s)	124
Eco105I	TACGTA	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	248
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	4 cut(s)	63, 115, 309, 422
FaiI	YATR	7 cut(s)	21, 61, 113, 192, 307, 392, 420
FatI	CATG	4 cut(s)	59, 111, 305, 418
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	80
HapII	CCGG	1 cut(s)	358
HgaI	GACGC	1 cut(s)	402
Hin1II	CATG	4 cut(s)	63, 115, 309, 422
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	2 cut(s)	247, 362
HpyCH4III	ACNGT	2 cut(s)	37, 320
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	240, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	4 cut(s)	63, 115, 309, 422
Kzo9I	GATC	2 cut(s)	99, 260
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	7 cut(s)	110, 235, 253, 262, 304, 310, 371
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	2 cut(s)	101, 262
MboI	GATC	2 cut(s)	99, 260
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	2 cut(s)	99, 260
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	2 cut(s)	106, 363
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	3 cut(s)	186, 189, 367
MseI	TTAA	5 cut(s)	32, 50, 165, 362, 439
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	2 cut(s)	99, 260
NlaIII	CATG	4 cut(s)	63, 115, 309, 422
NlaIV	GGNNCC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	63
PciI	ACATGT	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	425
Ppu21I	YACGTR	1 cut(s)	283
PscI	ACATGT	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	187
PsuI	RGATCY	2 cut(s)	99, 260
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	5 cut(s)	32, 50, 165, 362, 439
Sau3AI	GATC	2 cut(s)	99, 260
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	5 cut(s)	13, 126, 203, 251, 285
SfaNI	GCATC	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SnaBI	TACGTA	1 cut(s)	283
Sse9I	AATT	2 cut(s)	106, 363
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	37, 320
TaiI	ACGT	1 cut(s)	285
TasI	AATT	2 cut(s)	106, 363
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	5 cut(s)	32, 50, 165, 362, 439
Tru9I	TTAA	5 cut(s)	32, 50, 165, 362, 439
TscAI	CASTG	2 cut(s)	177, 272
TspDTI	ATGAA	2 cut(s)	122, 294
TspRI	CASTG	2 cut(s)	177, 272
XagI	CCTNNNNNAGG	1 cut(s)	180
XceI	RCATGY	1 cut(s)	63
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.