Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007341

Physical Location & Seq

Genomic Coordinates Forward (+)

10384202 .. 10385798

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG070100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCCGCCGGGATCATCACCGGCGGGACCCTCATTTTTTGGGGGGCCACTGGTTTGATGAAATTGGCGTACAAACTAATCCCTCTGTCTGTTGTTAGGGGAGTTCAATTAGCACAAGGCCTATCATTTGCGTTGACCGCAGTGAAATACATTAAGACGGTTCAGAACCTTTCTAAATCAAAGTCTCTGGGGCAGAGGCACTGGTTTGGCTTAGATGGGTTGGTGTTGGCCATTGTCTGTACTGGTTTCATTGTTCTTGTGAATGGTGCAGGCGACGAATATCTTCGTCGCCGTCAAGGGGATCAGGCTGTTAGTGCTGATGTGTGTAAGGAAGAAAAGCCCAGCACTAAAAGATGGACGAAAGTTGTGGGCAAAATTCCTTCAGCTTTTCTGATATTTGTGCTGGGTGTGATTTTGGCTTTTATAAGAAAGCCAAAAGTTGTGCATGAAATCAAGTTCGGTCCATCTGCTATGGAGGTAGTGAAGATATCTAGACATGCATGGAAAGATGGGTTCATCAAAGGAGCTATTCCACAGCTGCCTTTGTCAATACTGAACTCGGTGATTGCTGTGTGCAAATTGTCCTCGGATCTTTTCCCTGAGAGGGACTTCTCTCCCTCTTCGATTTCAGTGACCGTCGGGTTGATGAATGTGGTAGGTTGCTGGTTTGGAGCCATGCCCATGTGTCACCGGGCGGGGGGCCTGGCAGGGCAATACAAATTTGGGGGCAGGACTGGTGCGTGTGTGGCGCTGCTCGGGGCGGCCAAGTTTGTGTTGGGATTGGTTTTGGGGACCTCTTTGGTGAGAATTCTGAGCCAGTTTCCGGTTGGCGTTTTGGGGGTTCTGCTTTTGTTTGCTGGGATTGAACTGGCAATGTGTGCTAGAGACATGAACACCAAGGAGGAAGCCTTTGTGATGCTTATTTGCACTGCTGTCTCACTAGTGGGCTCAAGTGCAGCACTAGGGTTTGTGGTTGCGATGATTGTGTATGGCCTTCTTGGGCTAAGAAAATTCGCCTGCAGGAACGAACCTTTGGATTCTCTGACGTCTGCGGAGGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

354

Amino Acids

37.65

Weight (kDa)

9.66

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_MOT1	PF16983	1 - 43	3.3e-06	Molybdate transporter of MFS superfamily
MFS_MOT1	PF16983	172 - 290	1.4e-37	Molybdate transporter of MFS superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25680
fragaria_vesca	FvH4_2g30230
malus_domestica	MD08G1135400.v1.1
prunus_persica	Prupe.1G465500_v2.0.a1
pyrus_communis	pycom08g11440
rosa_chinensis	RchiOBHm_Chr4g0397011 RchiOBHm_Chr6g0312651
rosa_laevigata	RLG00000009458 RLG00000009459 RLG00000010307
rosa_multiflora	Rmu_sc0002859.1_g000003 Rmu_sc0002963.1_g000005 Rmu_ssc0000412.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342030
rosa_rugosa	Rorug03G0345500 Rorug06G0398100
rosa_samantha	Rh4AG076100 Rh4BG072600 Rh4CG080800 Rh4DG070100 Rh6AG515400 Rh6BG526700 Rh6DG517700
rosa_wichuraiana	Rw4G006110 Rw6G044780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AatII	GACGTC	1 cut(s)	1049
AciI	CCGC	6 cut(s)	6, 24, 138, 695, 761, 1052
AclWI	GGATC	3 cut(s)	20, 309, 597
AcoI	YGGCCR	3 cut(s)	3, 228, 762
AcsI	RAATTY	4 cut(s)	375, 719, 807, 1010
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	1046
AfaI	GTAC	2 cut(s)	71, 241
AfiI	CCNNNNNNNGG	4 cut(s)	298, 604, 697, 823
AgsI	TTSAA	2 cut(s)	107, 866
AhlI	ACTAGT	1 cut(s)	940
AjnI	CCWGG	1 cut(s)	702
AjuI	GAANNNNNNNTTGG	2 cut(s)	1016, 1048
AluBI	AGCT	3 cut(s)	386, 527, 538
AluI	AGCT	3 cut(s)	386, 527, 538
Alw26I	GTCTC	3 cut(s)	189, 879, 940
AlwI	GGATC	3 cut(s)	20, 309, 597
Ama87I	CYCGRG	1 cut(s)	755
AoxI	GGCC	7 cut(s)	3, 45, 118, 228, 700, 762, 991
ApeKI	GCWGC	3 cut(s)	538, 751, 956
ApoI	RAATTY	4 cut(s)	375, 719, 807, 1010
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	751
AspS9I	GGNCC	6 cut(s)	27, 45, 461, 700, 792, 1058
AsuC2I	CCSGG	2 cut(s)	10, 692
AsuHPI	GGTGA	4 cut(s)	10, 574, 680, 814
AvaI	CYCGRG	1 cut(s)	755
AvaII	GGWCC	4 cut(s)	27, 461, 792, 1058
BalI	TGGCCA	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	950
BbvI	GCAGC	3 cut(s)	525, 738, 968
BccI	CCATC	4 cut(s)	209, 348, 472, 503
BceAI	ACGGC	1 cut(s)	276
BciT130I	CCWGG	1 cut(s)	704
BcnI	CCSGG	2 cut(s)	10, 692
BcoDI	GTCTC	3 cut(s)	189, 879, 940
BcuI	ACTAGT	1 cut(s)	940
BfaI	CTAG	4 cut(s)	492, 882, 941, 962
BfmI	CTRYAG	1 cut(s)	1018
BfoI	RGCGCY	1 cut(s)	752
BisI	GCNGC	5 cut(s)	6, 539, 752, 762, 957
BlsI	GCNGC	5 cut(s)	7, 540, 753, 763, 958
Bme1390I	CCNGG	3 cut(s)	10, 692, 704
Bme18I	GGWCC	4 cut(s)	27, 461, 792, 1058
BmeT110I	CYCGRG	1 cut(s)	755
BmgT120I	GGNCC	6 cut(s)	27, 45, 461, 700, 792, 1058
BmiI	GGNNCC	7 cut(s)	28, 29, 46, 673, 701, 793, 1059
BmrFI	CCNGG	3 cut(s)	10, 692, 704
BmsI	GCATC	1 cut(s)	906
BpuEI	CTTGAG	1 cut(s)	934
BpuMI	CCSGG	2 cut(s)	10, 692
BsaHI	GRCGYC	1 cut(s)	1046
BsaJI	CCNNGG	2 cut(s)	585, 897
BsaWI	WCCGGW	1 cut(s)	823
Bsc4I	CCNNNNNNNGG	4 cut(s)	298, 604, 697, 823
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	6 cut(s)	55, 206, 247, 739, 817, 873
Bse3DI	GCAATG	1 cut(s)	879
BseBI	CCWGG	1 cut(s)	704
BseDI	CCNNGG	2 cut(s)	585, 897
BseLI	CCNNNNNNNGG	4 cut(s)	298, 604, 697, 823
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	2 cut(s)	591, 803
BseNI	ACTGG	6 cut(s)	55, 206, 247, 739, 817, 873
BseXI	GCAGC	3 cut(s)	525, 738, 968
BseYI	CCCAGC	3 cut(s)	341, 403, 857
BsgI	GTGCAG	2 cut(s)	288, 975
BshFI	GGCC	7 cut(s)	5, 47, 120, 230, 702, 764, 993
BsiHKCI	CYCGRG	1 cut(s)	755
BsiSI	CCGG	4 cut(s)	9, 21, 691, 824
BslFI	GGGAC	3 cut(s)	40, 620, 805
BslI	CCNNNNNNNGG	4 cut(s)	298, 604, 697, 823
BsmAI	GTCTC	3 cut(s)	189, 879, 940
BsmFI	GGGAC	3 cut(s)	40, 620, 805
BsnI	GGCC	7 cut(s)	5, 47, 120, 230, 702, 764, 993
BsoBI	CYCGRG	1 cut(s)	755
Bsp1286I	GDGCHC	1 cut(s)	950
Bsp143I	GATC	3 cut(s)	12, 301, 589
BspACI	CCGC	6 cut(s)	6, 24, 138, 695, 761, 1052
BspANI	GGCC	7 cut(s)	5, 47, 120, 230, 702, 764, 993
BspCNI	CTCAG	2 cut(s)	592, 804
BspLI	GGNNCC	7 cut(s)	28, 29, 46, 673, 701, 793, 1059
BspMAI	CTGCAG	1 cut(s)	1022
BspPI	GGATC	3 cut(s)	20, 309, 597
BsrDI	GCAATG	1 cut(s)	879
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	6 cut(s)	55, 206, 247, 739, 817, 873
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	585, 897
BssMI	GATC	3 cut(s)	12, 301, 589
BssNI	GRCGYC	1 cut(s)	1046
BssT1I	CCWWGG	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	2 cut(s)	160, 637
Bst6I	CTCTTC	1 cut(s)	625
BstACI	GRCGYC	1 cut(s)	1046
BstAPI	GCANNNNNTGC	1 cut(s)	878
BstC8I	GCNNGC	2 cut(s)	271, 1018
BstDEI	CTNAG	4 cut(s)	211, 600, 812, 1004
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	1 cut(s)	751
BstKTI	GATC	3 cut(s)	15, 304, 592
BstMAI	GTCTC	3 cut(s)	189, 879, 940
BstMBI	GATC	3 cut(s)	12, 301, 589
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 314, 746, 878
BstNI	CCWGG	1 cut(s)	704
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	3 cut(s)	8, 690, 702
BstSFI	CTRYAG	1 cut(s)	1018
BstV1I	GCAGC	3 cut(s)	525, 738, 968
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	7 cut(s)	5, 47, 120, 230, 702, 764, 993
BtgZI	GCGATG	1 cut(s)	992
BtsI	GCAGTG	2 cut(s)	147, 927
BtsIMutI	CAGTG	5 cut(s)	48, 147, 199, 636, 927
Cac8I	GCNNGC	2 cut(s)	271, 1018
CfoI	GCGC	1 cut(s)	751
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	6 cut(s)	27, 45, 461, 700, 792, 1058
Csp6I	GTAC	2 cut(s)	70, 240
CviAII	CATG	6 cut(s)	446, 497, 501, 676, 682, 889
CviQI	GTAC	2 cut(s)	70, 240
DdeI	CTNAG	4 cut(s)	211, 600, 812, 1004
DpnI	GATC	3 cut(s)	14, 303, 591
DpnII	GATC	3 cut(s)	12, 301, 589
EaeI	YGGCCR	3 cut(s)	3, 228, 762
Eam1104I	CTCTTC	1 cut(s)	625
EarI	CTCTTC	1 cut(s)	625
Eco130I	CCWWGG	1 cut(s)	897
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	950
Eco32I	GATATC	1 cut(s)	489
Eco47I	GGWCC	4 cut(s)	27, 461, 792, 1058
Eco57I	CTGAAG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	755
EcoO109I	RGGNCCY	3 cut(s)	27, 700, 792
EcoRI	GAATTC	1 cut(s)	807
EcoRII	CCWGG	1 cut(s)	702
EcoRV	GATATC	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	897
EcoT22I	ATGCAT	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	950
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	6 cut(s)	449, 500, 504, 679, 685, 892
FaqI	GGGAC	3 cut(s)	40, 620, 805
FatI	CATG	6 cut(s)	445, 496, 500, 675, 681, 888
FauI	CCCGC	2 cut(s)	17, 688
Fnu4HI	GCNGC	5 cut(s)	6, 539, 752, 762, 957
FriOI	GRGCYC	1 cut(s)	950
Fsp4HI	GCNGC	5 cut(s)	6, 539, 752, 762, 957
FspBI	CTAG	4 cut(s)	492, 882, 941, 962
GlaI	GCGC	1 cut(s)	750
GluI	GCNGC	5 cut(s)	6, 539, 752, 762, 957
GsaI	CCCAGC	3 cut(s)	345, 407, 861
HaeII	RGCGCY	1 cut(s)	752
HaeIII	GGCC	7 cut(s)	5, 47, 120, 230, 702, 764, 993
HapII	CCGG	4 cut(s)	9, 21, 691, 824
HhaI	GCGC	1 cut(s)	751
Hin1I	GRCGYC	1 cut(s)	1046
Hin1II	CATG	6 cut(s)	449, 500, 504, 679, 685, 892
Hin6I	GCGC	1 cut(s)	749
HinP1I	GCGC	1 cut(s)	749
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	1037
HpaII	CCGG	4 cut(s)	9, 21, 691, 824
HphI	GGTGA	4 cut(s)	10, 574, 680, 814
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	5 cut(s)	165, 393, 589, 813, 1044
Hpy188III	TCNNGA	1 cut(s)	492
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	3 cut(s)	278, 291, 641
HpyAV	CCTTC	2 cut(s)	390, 1004
HpyCH4III	ACNGT	2 cut(s)	160, 637
HpyCH4IV	ACGT	1 cut(s)	1046
HpyCH4V	TGCA	7 cut(s)	269, 445, 500, 576, 927, 956, 1020
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 314, 746, 878
HpyF3I	CTNAG	4 cut(s)	211, 600, 812, 1004
HpySE526I	ACGT	1 cut(s)	1046
Hsp92I	GRCGYC	1 cut(s)	1046
Hsp92II	CATG	6 cut(s)	449, 500, 504, 679, 685, 892
HspAI	GCGC	1 cut(s)	749
KflI	GGGWCCC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	12, 301, 589
LmnI	GCTCC	2 cut(s)	524, 671
Lsp1109I	GCAGC	3 cut(s)	525, 738, 968
LweI	GCATC	1 cut(s)	906
MaeI	CTAG	4 cut(s)	492, 882, 941, 962
MaeII	ACGT	1 cut(s)	1046
MaeIII	GTNAC	2 cut(s)	631, 686
MalI	GATC	3 cut(s)	14, 303, 591
MboI	GATC	3 cut(s)	12, 301, 589
MboII	GAAGA	4 cut(s)	275, 344, 496, 612
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	950
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	7 cut(s)	62, 107, 375, 578, 719, 807, 1010
MluNI	TGGCCA	1 cut(s)	230
Mox20I	TGGCCA	1 cut(s)	230
Mph1103I	ATGCAT	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	680
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	538
MspI	CCGG	4 cut(s)	9, 21, 691, 824
MspR9I	CCNGG	3 cut(s)	10, 692, 704
MvaI	CCWGG	1 cut(s)	704
MwoI	GCNNNNNNNGC	4 cut(s)	137, 314, 746, 878
NciI	CCSGG	2 cut(s)	10, 692
NdeII	GATC	3 cut(s)	12, 301, 589
NlaIII	CATG	6 cut(s)	449, 500, 504, 679, 685, 892
NlaIV	GGNNCC	7 cut(s)	28, 29, 46, 673, 701, 793, 1059
NmuCI	GTSAC	2 cut(s)	631, 686
NsiI	ATGCAT	1 cut(s)	502
NspI	RCATGY	1 cut(s)	500
PceI	AGGCCT	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	1037
PkrI	GCNGC	5 cut(s)	7, 540, 753, 763, 958
PpuMI	RGGWCCY	2 cut(s)	27, 792
PsiI	TTATAA	1 cut(s)	425
Psp5II	RGGWCCY	2 cut(s)	27, 792
Psp6I	CCWGG	1 cut(s)	702
PspFI	CCCAGC	3 cut(s)	341, 403, 857
PspGI	CCWGG	1 cut(s)	702
PspN4I	GGNNCC	7 cut(s)	28, 29, 46, 673, 701, 793, 1059
PspPI	GGNCC	6 cut(s)	27, 45, 461, 700, 792, 1058
PspPPI	RGGWCCY	2 cut(s)	27, 792
PstI	CTGCAG	1 cut(s)	1022
PsuI	RGATCY	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	538
RsaI	GTAC	2 cut(s)	71, 241
RsaNI	GTAC	2 cut(s)	70, 240
RseI	CAYNNNNRTG	1 cut(s)	680
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	5 cut(s)	6, 539, 752, 762, 957
Sau3AI	GATC	3 cut(s)	12, 301, 589
Sau96I	GGNCC	6 cut(s)	27, 45, 461, 700, 792, 1058
SbfI	CCTGCAGG	1 cut(s)	1022
ScrFI	CCNGG	3 cut(s)	10, 692, 704
SdaI	CCTGCAGG	1 cut(s)	1022
SduI	GDGCHC	1 cut(s)	950
SetI	ASST	9 cut(s)	171, 388, 480, 529, 540, 661, 797, 1033, 1049
SfaNI	GCATC	1 cut(s)	906
SfcI	CTRYAG	1 cut(s)	1018
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	4 cut(s)	27, 461, 792, 1058
SmiMI	CAYNNNNRTG	1 cut(s)	680
SmlI	CTYRAG	1 cut(s)	949
SmoI	CTYRAG	1 cut(s)	949
SpeI	ACTAGT	1 cut(s)	940
Sse8387I	CCTGCAGG	1 cut(s)	1022
Sse9I	AATT	7 cut(s)	62, 107, 375, 578, 719, 807, 1010
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	6 cut(s)	6, 24, 138, 695, 761, 1052
SspMI	CTAG	4 cut(s)	492, 882, 941, 962
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	3 cut(s)	8, 690, 702
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	2 cut(s)	160, 637
TaiI	ACGT	1 cut(s)	1049
TaqI	TCGA	1 cut(s)	623
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	7 cut(s)	62, 107, 375, 578, 719, 807, 1010
TatI	WGTACW	1 cut(s)	239
TauI	GCSGC	2 cut(s)	8, 764
TfiI	GAWTC	1 cut(s)	1037
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	5 cut(s)	55, 147, 206, 636, 934
TseFI	GTSAC	2 cut(s)	631, 686
TseI	GCWGC	3 cut(s)	538, 751, 956
Tsp45I	GTSAC	2 cut(s)	631, 686
TspDTI	ATGAA	6 cut(s)	74, 238, 462, 505, 662, 905
TspRI	CASTG	5 cut(s)	55, 147, 206, 636, 934
VpaK11BI	GGWCC	4 cut(s)	27, 461, 792, 1058
XapI	RAATTY	4 cut(s)	375, 719, 807, 1010
XbaI	TCTAGA	1 cut(s)	491
XceI	RCATGY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	2 cut(s)	772, 824
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	4 cut(s)	492, 882, 941, 962
ZraI	GACGTC	1 cut(s)	1047
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.