Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007341

Physical Location & Seq

Genomic Coordinates Forward (+)

10718121 .. 10719385

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGCGACTTGGGCACCTACATCCCCATAGTGGTCGCTCTAACCATAGCTAGGGACTTAAACCTCGGCACCACACTGATCTTCACTGGGATCTACAACATCATCACCGGTGCCATTTACGGTGTCCCCATGCCGGTCCAACCCATGAAGGCCATTGCCGCCACGGCGCTCTCCAACCCGGATTTCGGCGTTACAGAGATCATGGCCGCCGGGATCATTACCGGTGGGAGCCTCATTTTTTTGGGGGCAACTGGTTTGATGAAATTGGCGTACAAACTAATCCCTCTGTCTGTTGTTAGGGGAGTTCAATTAGCACAAGGCCTATCATTTGCGTTGACCGCAGTGAAATACATTAAGACGGTTCAGAACCTTTCTAAATCAAAGTCTCTGGGGCAGAGGCACTGGTTTGGCTTAGATGGGTTGGTGATGGCCATTGTCTGTACTGGTTTCATTGTTCTTGTGAATGGTGCAGGCGACGAATATCTTCGTCGCCGTCAAGGGGATCAGGCTGTTAGTGCTGATGTGTGTGAGGAAGAAAAGCCCAGCACAAAAAGATGGAGGAAAGTTGTGGGCAAAATTCCTTCAGCTTTTCTGATATTTGTGCTGGGTGTGATTTTGGCTTTCATAAGAAAGCCAAAAGTTGTGCATGAAATTAAGTTCGGTCCATCTGCTATGGAGGTAGTGAAGATATCTAGACCTGCATGGAAAGATGGGTTCATCAAAGGAGCTATTCCACAGCTGCCTTTGTCAATACTGAACTCGGTGATAGCTGTGTGCAAATTGTCCTCGGATCTTTTCCCTGAGAGGGACTTCTCTCCCTCTTCGATTTCAGTGACCGTCGGGTTGATGAATGTGGTAGGTTGCTGGTTTGGAGCTATGCCCATGTGTCACGGGGCGGGGGCCTGGCAGGGCAGTACAAATTTGGGGGCAGGACTGTTTCCGGTTGGCGTTTTGGGGGTTCTGCTTTTGTTTGCTGGGATTGAACTGGCAATGTGTGCTAGAGACATGAACAACAAGGAGGATGCCTTTGTGATGCTTATTTGCACTGCTGTCTCACTAGTGGGCTCAAGTGCAGCACTAGGGTTTGTGGTTGCGATGATTGTGTATGGCCTTCTTTGGCTAAGAAAATTCGCCTGCAGGAACGAACCTTTGGATTCTCTGACATCTGCGGAGGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

393

Amino Acids

41.79

Weight (kDa)

9.15

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_MOT1	PF16983	1 - 110	1.5e-23	Molybdate transporter of MFS superfamily
MFS_MOT1	PF16983	239 - 305	1.6e-21	Molybdate transporter of MFS superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25680
fragaria_vesca	FvH4_2g30230
malus_domestica	MD08G1135400.v1.1
prunus_persica	Prupe.1G465500_v2.0.a1
pyrus_communis	pycom08g11440
rosa_chinensis	RchiOBHm_Chr4g0397011 RchiOBHm_Chr6g0312651
rosa_laevigata	RLG00000009458 RLG00000009459 RLG00000010307
rosa_multiflora	Rmu_sc0002859.1_g000003 Rmu_sc0002963.1_g000005 Rmu_ssc0000412.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342030
rosa_rugosa	Rorug03G0345500 Rorug06G0398100
rosa_samantha	Rh4AG076100 Rh4BG072600 Rh4CG080800 Rh4DG070100 Rh6AG515400 Rh6BG526700 Rh6DG517700
rosa_wichuraiana	Rw4G006110 Rw6G044780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	706
AccB1I	GGYRCC	3 cut(s)	14, 68, 110
AciI	CCGC	5 cut(s)	159, 207, 339, 896, 1169
AclWI	GGATC	4 cut(s)	98, 221, 510, 798
AcoI	YGGCCR	2 cut(s)	204, 429
AcsI	RAATTY	3 cut(s)	576, 919, 1127
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	3 cut(s)	272, 442, 916
AfiI	CCNNNNNNNGG	6 cut(s)	31, 51, 133, 185, 499, 805
AgeI	ACCGGT	2 cut(s)	107, 221
AgsI	TTSAA	2 cut(s)	308, 983
AhlI	ACTAGT	1 cut(s)	1057
AjnI	CCWGG	1 cut(s)	902
AjuI	GAANNNNNNNTTGG	4 cut(s)	167, 199, 1133, 1165
AluBI	AGCT	6 cut(s)	50, 587, 728, 739, 770, 875
AluI	AGCT	6 cut(s)	50, 587, 728, 739, 770, 875
Alw26I	GTCTC	3 cut(s)	390, 996, 1057
AlwI	GGATC	4 cut(s)	98, 221, 510, 798
AoxI	GGCC	6 cut(s)	150, 204, 319, 429, 900, 1108
ApeKI	GCWGC	2 cut(s)	739, 1073
ApoI	RAATTY	3 cut(s)	576, 919, 1127
AsiGI	ACCGGT	2 cut(s)	107, 221
Asp700I	GAANNNNTTC	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	4 cut(s)	136, 662, 900, 1175
AsuC2I	CCSGG	2 cut(s)	179, 211
AsuHPI	GGTGA	3 cut(s)	97, 436, 775
AvaII	GGWCC	3 cut(s)	136, 662, 1175
BaeGI	GKGCMC	1 cut(s)	17
BalI	TGGCCA	1 cut(s)	431
BanI	GGYRCC	3 cut(s)	14, 68, 110
BanII	GRGCYC	1 cut(s)	1067
BbvI	GCAGC	2 cut(s)	726, 1085
BccI	CCATC	5 cut(s)	410, 421, 549, 673, 704
BceAI	ACGGC	2 cut(s)	180, 477
BciT130I	CCWGG	1 cut(s)	904
BcnI	CCSGG	2 cut(s)	179, 211
BcoDI	GTCTC	3 cut(s)	390, 996, 1057
BcuI	ACTAGT	1 cut(s)	1057
BfaI	CTAG	5 cut(s)	51, 693, 999, 1058, 1079
BfmI	CTRYAG	1 cut(s)	1135
BfoI	RGCGCY	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	706
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	4 cut(s)	159, 207, 740, 1074
BlsI	GCNGC	4 cut(s)	160, 208, 741, 1075
Bme1390I	CCNGG	3 cut(s)	179, 211, 904
Bme18I	GGWCC	3 cut(s)	136, 662, 1175
BmgT120I	GGNCC	4 cut(s)	136, 662, 900, 1175
BmiI	GGNNCC	6 cut(s)	16, 70, 112, 230, 901, 1176
BmrFI	CCNGG	3 cut(s)	179, 211, 904
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	2 cut(s)	1012, 1023
BmuI	ACTGGG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	1051
BpuMI	CCSGG	2 cut(s)	179, 211
BsaJI	CCNNGG	3 cut(s)	64, 162, 786
BsaWI	WCCGGW	3 cut(s)	107, 221, 940
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 51, 133, 185, 499, 805
Bse118I	RCCGGY	3 cut(s)	107, 133, 221
Bse1I	ACTGG	5 cut(s)	91, 256, 407, 448, 990
Bse3DI	GCAATG	2 cut(s)	153, 996
BseBI	CCWGG	1 cut(s)	904
BseDI	CCNNGG	3 cut(s)	64, 162, 786
BseGI	GGATG	2 cut(s)	21, 1027
BseLI	CCNNNNNNNGG	6 cut(s)	31, 51, 133, 185, 499, 805
BseMI	GCAATG	2 cut(s)	153, 996
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	5 cut(s)	91, 256, 407, 448, 990
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	726, 1085
BseYI	CCCAGC	3 cut(s)	542, 604, 974
BsgI	GTGCAG	2 cut(s)	489, 1092
BshFI	GGCC	6 cut(s)	152, 206, 321, 431, 902, 1110
BshNI	GGYRCC	3 cut(s)	14, 68, 110
BshTI	ACCGGT	2 cut(s)	107, 221
BsiSI	CCGG	6 cut(s)	108, 134, 179, 210, 222, 941
BslFI	GGGAC	3 cut(s)	68, 110, 821
BslI	CCNNNNNNNGG	6 cut(s)	31, 51, 133, 185, 499, 805
BsmAI	GTCTC	3 cut(s)	390, 996, 1057
BsmFI	GGGAC	3 cut(s)	68, 110, 821
BsnI	GGCC	6 cut(s)	152, 206, 321, 431, 902, 1110
Bsp1286I	GDGCHC	2 cut(s)	17, 1067
Bsp143I	GATC	6 cut(s)	78, 90, 198, 213, 502, 790
BspACI	CCGC	5 cut(s)	159, 207, 339, 896, 1169
BspANI	GGCC	6 cut(s)	152, 206, 321, 431, 902, 1110
BspCNI	CTCAG	1 cut(s)	793
BspLI	GGNNCC	6 cut(s)	16, 70, 112, 230, 901, 1176
BspMAI	CTGCAG	1 cut(s)	1139
BspMI	ACCTGC	1 cut(s)	706
BspPI	GGATC	4 cut(s)	98, 221, 510, 798
BspT107I	GGYRCC	3 cut(s)	14, 68, 110
BsrDI	GCAATG	2 cut(s)	153, 996
BsrFI	RCCGGY	3 cut(s)	107, 133, 221
BsrI	ACTGG	5 cut(s)	91, 256, 407, 448, 990
BssAI	RCCGGY	3 cut(s)	107, 133, 221
BssECI	CCNNGG	3 cut(s)	64, 162, 786
BssMI	GATC	6 cut(s)	78, 90, 198, 213, 502, 790
Bst2UI	CCWGG	1 cut(s)	904
Bst4CI	ACNGT	4 cut(s)	122, 361, 838, 936
Bst6I	CTCTTC	1 cut(s)	826
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstC8I	GCNNGC	2 cut(s)	472, 1135
BstDEI	CTNAG	3 cut(s)	412, 801, 1121
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	21, 1027
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	6 cut(s)	81, 93, 201, 216, 505, 793
BstMAI	GTCTC	3 cut(s)	390, 996, 1057
BstMBI	GATC	6 cut(s)	78, 90, 198, 213, 502, 790
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 158, 164, 338, 515, 995
BstNI	CCWGG	1 cut(s)	904
BstSCI	CCNGG	3 cut(s)	177, 209, 902
BstSFI	CTRYAG	1 cut(s)	1135
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	726, 1085
BstX2I	RGATCY	2 cut(s)	90, 790
BstYI	RGATCY	2 cut(s)	90, 790
BsuRI	GGCC	6 cut(s)	152, 206, 321, 431, 902, 1110
BtgI	CCRYGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	1109
BtsCI	GGATG	2 cut(s)	21, 1027
BtsI	GCAGTG	2 cut(s)	348, 1044
BtsIMutI	CAGTG	6 cut(s)	74, 84, 348, 400, 837, 1044
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	2 cut(s)	472, 1135
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	3 cut(s)	107, 133, 221
Cfr13I	GGNCC	4 cut(s)	136, 662, 900, 1175
Csp6I	GTAC	3 cut(s)	271, 441, 915
CspAI	ACCGGT	2 cut(s)	107, 221
CviAII	CATG	7 cut(s)	130, 145, 202, 647, 702, 883, 1006
CviQI	GTAC	3 cut(s)	271, 441, 915
DdeI	CTNAG	3 cut(s)	412, 801, 1121
DpnI	GATC	6 cut(s)	80, 92, 200, 215, 504, 792
DpnII	GATC	6 cut(s)	78, 90, 198, 213, 502, 790
EaeI	YGGCCR	2 cut(s)	204, 429
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
Eco147I	AGGCCT	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	1067
Eco32I	GATATC	1 cut(s)	690
Eco47I	GGWCC	3 cut(s)	136, 662, 1175
Eco57I	CTGAAG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	900
EcoRII	CCWGG	1 cut(s)	902
EcoRV	GATATC	1 cut(s)	690
EcoT38I	GRGCYC	1 cut(s)	1067
FaeI	CATG	7 cut(s)	133, 148, 205, 650, 705, 886, 1009
FaqI	GGGAC	3 cut(s)	68, 110, 821
FatI	CATG	7 cut(s)	129, 144, 201, 646, 701, 882, 1005
FauI	CCCGC	1 cut(s)	889
Fnu4HI	GCNGC	4 cut(s)	159, 207, 740, 1074
FokI	GGATG	2 cut(s)	8, 1034
FriOI	GRGCYC	1 cut(s)	1067
Fsp4HI	GCNGC	4 cut(s)	159, 207, 740, 1074
FspBI	CTAG	5 cut(s)	51, 693, 999, 1058, 1079
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	4 cut(s)	159, 207, 740, 1074
GsaI	CCCAGC	3 cut(s)	546, 608, 978
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	6 cut(s)	152, 206, 321, 431, 902, 1110
HapII	CCGG	6 cut(s)	108, 134, 179, 210, 222, 941
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	7 cut(s)	133, 148, 205, 650, 705, 886, 1009
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	1 cut(s)	1154
HpaII	CCGG	6 cut(s)	108, 134, 179, 210, 222, 941
HphI	GGTGA	3 cut(s)	97, 436, 775
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	4 cut(s)	366, 594, 790, 1161
Hpy188III	TCNNGA	1 cut(s)	693
Hpy8I	GTNNAC	1 cut(s)	336
Hpy99I	CGWCG	3 cut(s)	479, 492, 842
HpyAV	CCTTC	3 cut(s)	142, 591, 1121
HpyCH4III	ACNGT	4 cut(s)	122, 361, 838, 936
HpyCH4V	TGCA	7 cut(s)	470, 646, 701, 777, 1044, 1073, 1137
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 158, 164, 338, 515, 995
HpyF3I	CTNAG	3 cut(s)	412, 801, 1121
Hsp92II	CATG	7 cut(s)	133, 148, 205, 650, 705, 886, 1009
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	6 cut(s)	78, 90, 198, 213, 502, 790
LmnI	GCTCC	3 cut(s)	228, 725, 872
Lsp1109I	GCAGC	2 cut(s)	726, 1085
LweI	GCATC	2 cut(s)	1012, 1023
MaeI	CTAG	5 cut(s)	51, 693, 999, 1058, 1079
MaeIII	GTNAC	3 cut(s)	190, 832, 887
MalI	GATC	6 cut(s)	80, 92, 200, 215, 504, 792
MboI	GATC	6 cut(s)	78, 90, 198, 213, 502, 790
MboII	GAAGA	5 cut(s)	73, 476, 545, 697, 813
MflI	RGATCY	2 cut(s)	90, 790
MhlI	GDGCHC	2 cut(s)	17, 1067
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	7 cut(s)	263, 308, 576, 651, 779, 919, 1127
MluNI	TGGCCA	1 cut(s)	431
MmeI	TCCRAC	2 cut(s)	163, 198
Mox20I	TGGCCA	1 cut(s)	431
MroXI	GAANNNNTTC	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	3 cut(s)	59, 354, 654
Msp20I	TGGCCA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	739
MspI	CCGG	6 cut(s)	108, 134, 179, 210, 222, 941
MspR9I	CCNGG	3 cut(s)	179, 211, 904
MvaI	CCWGG	1 cut(s)	904
MwoI	GCNNNNNNNGC	6 cut(s)	12, 158, 164, 338, 515, 995
NciI	CCSGG	2 cut(s)	179, 211
NdeII	GATC	6 cut(s)	78, 90, 198, 213, 502, 790
NlaIII	CATG	7 cut(s)	133, 148, 205, 650, 705, 886, 1009
NlaIV	GGNNCC	6 cut(s)	16, 70, 112, 230, 901, 1176
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	832, 887
PceI	AGGCCT	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	1154
PinAI	ACCGGT	2 cut(s)	107, 221
PkrI	GCNGC	4 cut(s)	160, 208, 741, 1075
Psp6I	CCWGG	1 cut(s)	902
PspFI	CCCAGC	3 cut(s)	542, 604, 974
PspGI	CCWGG	1 cut(s)	902
PspN4I	GGNNCC	6 cut(s)	16, 70, 112, 230, 901, 1176
PspPI	GGNCC	4 cut(s)	136, 662, 900, 1175
PstI	CTGCAG	1 cut(s)	1139
PsuI	RGATCY	2 cut(s)	90, 790
PvuII	CAGCTG	1 cut(s)	739
RsaI	GTAC	3 cut(s)	272, 442, 916
RsaNI	GTAC	3 cut(s)	271, 441, 915
SaqAI	TTAA	3 cut(s)	59, 354, 654
SatI	GCNGC	4 cut(s)	159, 207, 740, 1074
Sau3AI	GATC	6 cut(s)	78, 90, 198, 213, 502, 790
Sau96I	GGNCC	4 cut(s)	136, 662, 900, 1175
SbfI	CCTGCAGG	1 cut(s)	1139
ScrFI	CCNGG	3 cut(s)	179, 211, 904
SdaI	CCTGCAGG	1 cut(s)	1139
SduI	GDGCHC	2 cut(s)	17, 1067
SfaNI	GCATC	2 cut(s)	1012, 1023
SfcI	CTRYAG	1 cut(s)	1135
SgrAI	CRCCGGYG	1 cut(s)	107
SinI	GGWCC	3 cut(s)	136, 662, 1175
SmlI	CTYRAG	1 cut(s)	1066
SmoI	CTYRAG	1 cut(s)	1066
SpeI	ACTAGT	1 cut(s)	1057
Sse8387I	CCTGCAGG	1 cut(s)	1139
Sse9I	AATT	7 cut(s)	263, 308, 576, 651, 779, 919, 1127
SseBI	AGGCCT	1 cut(s)	321
SsiI	CCGC	5 cut(s)	159, 207, 339, 896, 1169
SspMI	CTAG	5 cut(s)	51, 693, 999, 1058, 1079
StuI	AGGCCT	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	177, 209, 902
TaaI	ACNGT	4 cut(s)	122, 361, 838, 936
TaqI	TCGA	1 cut(s)	824
TaqII	GACCGA	1 cut(s)	650
TasI	AATT	7 cut(s)	263, 308, 576, 651, 779, 919, 1127
TatI	WGTACW	2 cut(s)	440, 914
TauI	GCSGC	2 cut(s)	161, 209
TfiI	GAWTC	1 cut(s)	1154
Tru1I	TTAA	3 cut(s)	59, 354, 654
Tru9I	TTAA	3 cut(s)	59, 354, 654
TscAI	CASTG	6 cut(s)	81, 91, 348, 407, 837, 1051
TseFI	GTSAC	2 cut(s)	832, 887
TseI	GCWGC	2 cut(s)	739, 1073
Tsp45I	GTSAC	2 cut(s)	832, 887
TspDTI	ATGAA	8 cut(s)	161, 275, 439, 613, 663, 706, 863, 1022
TspRI	CASTG	6 cut(s)	81, 91, 348, 407, 837, 1051
VpaK11BI	GGWCC	3 cut(s)	136, 662, 1175
XapI	RAATTY	3 cut(s)	576, 919, 1127
XbaI	TCTAGA	1 cut(s)	692
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	5 cut(s)	51, 693, 999, 1058, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.