Rmu_sc0002919.1_g000001

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002919.1
OG0018621
Physical Location & Seq
Reverse (-)
605 .. 1716
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
atgcattcaaccccaccaccgattcgcgatagcgacacaacgtcgaatgccaacacgtcctactcacccctgccaagactcctcttaagtggggacttgggggactggggtaatggctgtacggaagccacatggcataaactggccttaaatttccgatacttttatcaaataacaaactccccacccaagagaactcttgaccggggacttgggggacttgttggtatgcacatacctcctaagcacaagtatcgaaagcacaagactcgtgtcgccaatacacaagcgaggccggcacacccggtcttccctctgaccttcgtctgttttgcagataagcgagaccttttccaatacaacgaagggcttcacaatgtggttgtagcagattctcctgaatcgtttgatcaatgtcggatgtctccaaaccttggcgactatggtggtgggtcagacttaatagtcatgaatgatcctggaacctactatttcatgtgttcatttaactgcttgaaagacatgatgaaattcaaggtcactcccatcctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

184

Amino Acids

20.72

Weight (kDa)

8.8

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 117 - 170 1.1e-07 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 434
AccII CGCG 1 cut(s) 27
AclWI GGATC 1 cut(s) 470
AcsI RAATTY 2 cut(s) 151, 530
AdeI CACNNNGTG 1 cut(s) 379
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 434
AflII CTTAAG 1 cut(s) 85
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 3 cut(s) 9, 517, 535
AhdI GACNNNNNGTC 1 cut(s) 40
AjiI CACGTC 1 cut(s) 57
AjnI CCWGG 1 cut(s) 478
Alw26I GTCTC 2 cut(s) 339, 429
AlwI GGATC 1 cut(s) 470
AoxI GGCC 2 cut(s) 144, 293
ApoI RAATTY 2 cut(s) 151, 530
Asp700I GAANNNNTTC 1 cut(s) 369
AsuC2I CCSGG 2 cut(s) 206, 305
AsuHPI GGTGA 1 cut(s) 57
BauI CACGAG 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 301
BccI CCATC 1 cut(s) 554
BcgI CGANNNNNNTGC 4 cut(s) 236, 251, 270, 285
BciT130I CCWGG 1 cut(s) 480
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 2 cut(s) 206, 305
BcoDI GTCTC 2 cut(s) 339, 429
BfmI CTRYAG 1 cut(s) 551
BfrI CTTAAG 1 cut(s) 85
Bme1390I CCNGG 3 cut(s) 206, 305, 480
BmeRI GACNNNNNGTC 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 3 cut(s) 206, 305, 480
BmrI ACTGGG 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 115
BoxI GACNNNNGTC 2 cut(s) 272, 323
BpiI GAAGAC 1 cut(s) 301
Bpu10I CCTNAGC 1 cut(s) 243
BpuMI CCSGG 2 cut(s) 206, 305
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 205, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 110, 147
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 205, 433
BseGI GGATG 2 cut(s) 426, 546
BseLI CCNNNNNNNGG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 110, 147
BseRI GAGGAG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 146, 295
BsiSI CCGG 3 cut(s) 205, 296, 305
BslFI GGGAC 4 cut(s) 107, 116, 222, 231
BslI CCNNNNNNNGG 1 cut(s) 434
BsmAI GTCTC 2 cut(s) 339, 429
BsmFI GGGAC 4 cut(s) 107, 116, 222, 231
BsmI GAATGC 2 cut(s) 4, 52
BsnI GGCC 2 cut(s) 146, 295
Bso31I GGTCTC 1 cut(s) 339
Bsp143I GATC 2 cut(s) 409, 475
Bsp68I TCGCGA 1 cut(s) 27
BspANI GGCC 2 cut(s) 146, 295
BspFNI CGCG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 484
BspPI GGATC 1 cut(s) 470
BspTI CTTAAG 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 2 cut(s) 110, 147
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 205, 433
BssMI GATC 2 cut(s) 409, 475
BssSI CACGAG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 433
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 480
BstAFI CTTAAG 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 426, 546
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 2 cut(s) 412, 478
BstMAI GTCTC 2 cut(s) 339, 429
BstMBI GATC 2 cut(s) 409, 475
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 480
BstPAI GACNNNNGTC 2 cut(s) 272, 323
BstSCI CCNGG 3 cut(s) 204, 303, 478
BstSFI CTRYAG 1 cut(s) 551
BstUI CGCG 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 301
BsuRI GGCC 2 cut(s) 146, 295
BtrI CACGTC 1 cut(s) 57
BtsCI GGATG 2 cut(s) 426, 546
BtuMI TCGCGA 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 297
CciI TCATGA 1 cut(s) 468
Cfr10I RCCGGY 1 cut(s) 295
Csp6I GTAC 1 cut(s) 120
CviAII CATG 4 cut(s) 132, 469, 496, 523
CviJI RGCY 5 cut(s) 117, 128, 146, 295, 370
CviKI_1 RGCY 5 cut(s) 117, 128, 146, 295, 370
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 411, 477
DpnII GATC 2 cut(s) 409, 475
DraIII CACNNNGTG 1 cut(s) 379
DrdI GACNNNNNNGTC 1 cut(s) 464
DriI GACNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 464
Eam1105I GACNNNNNGTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 433
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 433
FaeI CATG 4 cut(s) 135, 472, 499, 526
FaiI YATR 8 cut(s) 133, 138, 230, 236, 444, 470, 497, 524
FaqI GGGAC 4 cut(s) 107, 116, 222, 231
FatI CATG 4 cut(s) 131, 468, 495, 522
FbaI TGATCA 1 cut(s) 409
FokI GGATG 2 cut(s) 433, 533
HaeIII GGCC 2 cut(s) 146, 295
HapII CCGG 3 cut(s) 205, 296, 305
Hin1II CATG 4 cut(s) 135, 472, 499, 526
HinfI GANTC 5 cut(s) 22, 78, 268, 392, 401
HpaII CCGG 3 cut(s) 205, 296, 305
HphI GGTGA 1 cut(s) 57
Hpy188I TCNGA 4 cut(s) 158, 318, 420, 457
Hpy188III TCNNGA 4 cut(s) 26, 200, 398, 469
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 331, 359
HpyCH4IV ACGT 2 cut(s) 41, 56
HpyCH4V TGCA 3 cut(s) 4, 232, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 2 cut(s) 41, 56
Hsp92II CATG 4 cut(s) 135, 472, 499, 526
KroI GCCGGC 1 cut(s) 295
KroNI GCCGGC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 2 cut(s) 409, 475
LpnPI CCDG 9 cut(s) 83, 91, 128, 218, 309, 318, 411, 465, 492
MaeII ACGT 2 cut(s) 41, 56
MaeIII GTNAC 1 cut(s) 538
MalI GATC 2 cut(s) 411, 477
MboI GATC 2 cut(s) 409, 475
MboII GAAGA 1 cut(s) 301
MluCI AATT 2 cut(s) 151, 530
MlyI GAGTC 2 cut(s) 72, 262
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 4 cut(s) 92, 249, 285, 324
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 4 cut(s) 86, 149, 461, 507
MspCI CTTAAG 1 cut(s) 85
MspI CCGG 3 cut(s) 205, 296, 305
MspR9I CCNGG 3 cut(s) 206, 305, 480
Mva1269I GAATGC 2 cut(s) 4, 52
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 296
NaeI GCCGGC 1 cut(s) 297
NciI CCSGG 2 cut(s) 206, 305
NdeII GATC 2 cut(s) 409, 475
NgoMIV GCCGGC 1 cut(s) 295
NlaIII CATG 4 cut(s) 135, 472, 499, 526
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 1 cut(s) 538
NruI TCGCGA 1 cut(s) 27
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 468
PctI GAATGC 2 cut(s) 4, 52
PdiI GCCGGC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 22, 392, 401
PflMI CCANNNNNTGG 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 478
PleI GAGTC 2 cut(s) 72, 262
PpsI GAGTC 2 cut(s) 72, 262
PshAI GACNNNNGTC 2 cut(s) 272, 323
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 484
RruI TCGCGA 1 cut(s) 27
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 4 cut(s) 86, 149, 461, 507
Sau3AI GATC 2 cut(s) 409, 475
SchI GAGTC 2 cut(s) 72, 262
ScrFI CCNGG 3 cut(s) 206, 305, 480
SetI ASST 8 cut(s) 44, 59, 241, 323, 351, 435, 488, 540
SfcI CTRYAG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 2 cut(s) 151, 530
StyD4I CCNGG 3 cut(s) 204, 303, 478
StyI CCWWGG 1 cut(s) 433
TaiI ACGT 2 cut(s) 44, 59
TaqI TCGA 2 cut(s) 44, 256
TasI AATT 2 cut(s) 151, 530
TfiI GAWTC 3 cut(s) 22, 392, 401
Tru1I TTAA 4 cut(s) 86, 149, 461, 507
Tru9I TTAA 4 cut(s) 86, 149, 461, 507
TseFI GTSAC 1 cut(s) 538
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 4 cut(s) 484, 485, 492, 542
TspGWI ACGGA 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 434
Vha464I CTTAAG 1 cut(s) 85
XapI RAATTY 2 cut(s) 151, 530
XmnI GAANNNNTTC 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.