Rh7DG237300

Domain of unknown function (DUF383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018621
Physical Location & Seq
Forward (+)
23676908 .. 23689315
12408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG237300.1

Sequence Viewer

Length: 336 bp
ATGAGCGAGCTGCAGAATTTGCTTTTGATTTCAGAGTTTCTCTGGCCAGCTCTGCTTCTACCTGTTGCCGGTAACAAGATTTACAGTCAGCAAGATAGATCAAAAATGCCACTTGAGCTTAGTAGTGCTCTCTCAATTGAGCGTGAACCAGTTGATGATCCTGAAATTCGTGCTGAAGTCCTGGAGGCAATATACATGATCACATTACAGGTGAAAAATGATGCAAGCACTAATGACCCAAATAAGGGTTTGAGATTCTCTCAATTGGCAAGTTCTTGGGTTTTGCTCCGAGCTGCAGTCAAAATCAAAGTTAACGGCAAACAAGTCTCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF383 DUF384

Protein Analysis

111

Amino Acids

12.39

Weight (kDa)

5.4

Isoelectric Point (pI)

63.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF383 PF04063 12 - 57 3.9e-07 Domain of unknown function (DUF383)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 2 cut(s) 16, 165
AcuI CTGAAG 1 cut(s) 195
AfiI CCNNNNNNNGG 3 cut(s) 68, 244, 245
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 4 cut(s) 10, 50, 118, 293
AluI AGCT 4 cut(s) 10, 50, 118, 293
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 10, 293
ApoI RAATTY 2 cut(s) 16, 165
AsuHPI GGTGA 1 cut(s) 223
BalI TGGCCA 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 182
BclI TGATCA 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 331
BfmI CTRYAG 2 cut(s) 11, 294
BisI GCNGC 2 cut(s) 11, 294
BlsI GCNGC 2 cut(s) 12, 295
Bme1390I CCNGG 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 244, 276
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 244, 245
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 68, 244, 245
BseNI ACTGG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 3 cut(s) 68, 244, 245
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 3 cut(s) 98, 157, 198
BspANI GGCC 1 cut(s) 46
BspMAI CTGCAG 2 cut(s) 15, 298
BspPI GGATC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 3 cut(s) 98, 157, 198
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 19
BstC8I GCNNGC 3 cut(s) 8, 48, 226
BstDEI CTNAG 2 cut(s) 119, 328
BstKTI GATC 3 cut(s) 101, 160, 201
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 3 cut(s) 98, 157, 198
BstMWI GCNNNNNNNGC 3 cut(s) 19, 52, 115
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstSFI CTRYAG 2 cut(s) 11, 294
BstV1I GCAGC 1 cut(s) 280
BsuRI GGCC 1 cut(s) 46
Cac8I GCNNGC 3 cut(s) 8, 48, 226
Cfr10I RCCGGY 1 cut(s) 68
CviAII CATG 1 cut(s) 196
CviJI RGCY 5 cut(s) 10, 46, 50, 118, 293
CviKI_1 RGCY 5 cut(s) 10, 46, 50, 118, 293
DdeI CTNAG 2 cut(s) 119, 328
DpnI GATC 3 cut(s) 100, 159, 200
DpnII GATC 3 cut(s) 98, 157, 198
EaeI YGGCCR 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 199
FaiI YATR 2 cut(s) 193, 197
FatI CATG 1 cut(s) 195
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 11, 294
Fsp4HI GCNGC 2 cut(s) 11, 294
GluI GCNGC 2 cut(s) 11, 294
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 69
Hin1II CATG 1 cut(s) 199
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 1 cut(s) 255
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 146, 313
Hpy188I TCNGA 2 cut(s) 34, 290
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 2 cut(s) 146, 313
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 13, 224, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 52, 115
HpyF3I CTNAG 2 cut(s) 119, 328
Hsp92II CATG 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 198
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 3 cut(s) 98, 157, 198
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 9 cut(s) 28, 60, 75, 82, 162, 167, 174, 194, 194
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 71
MalI GATC 3 cut(s) 100, 159, 200
MboI GATC 3 cut(s) 98, 157, 198
MfeI CAATTG 2 cut(s) 135, 263
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 46
MluCI AATT 4 cut(s) 16, 135, 165, 263
MluNI TGGCCA 1 cut(s) 46
MnlI CCTC 1 cut(s) 178
Mox20I TGGCCA 1 cut(s) 46
MscI TGGCCA 1 cut(s) 46
MseI TTAA 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 46
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 182
MunI CAATTG 2 cut(s) 135, 263
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 19, 52, 115
NdeII GATC 3 cut(s) 98, 157, 198
NlaIII CATG 1 cut(s) 199
PfeI GAWTC 1 cut(s) 255
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 2 cut(s) 12, 295
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PstI CTGCAG 2 cut(s) 15, 298
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 11, 294
Sau3AI GATC 3 cut(s) 98, 157, 198
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 130
SetI ASST 6 cut(s) 12, 52, 64, 120, 213, 295
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 2 cut(s) 11, 294
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 4 cut(s) 16, 135, 165, 263
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 86
TasI AATT 4 cut(s) 16, 135, 165, 263
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseI GCWGC 2 cut(s) 10, 293
XapI RAATTY 2 cut(s) 16, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.