Rh5DG415600

Domain of unknown function (DUF383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018621
Physical Location & Seq
Reverse (-)
66134020 .. 66134624
605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG415600.1

Sequence Viewer

Length: 273 bp
ATGATTGTTTGCTTACAGGTTTTTGGAACTATTCGTAACTGTTGTTTTGAAGCTGTGAGCGAGCTGCAGAATTTGCTTTTGATTTCAGAGTTTCTCTGGCCAACTCTGCTTCTACCTATTGCCGGTAACAAGATTTACAGTCAGCAAGATAGATCAAAAATGCCACTTGAGCTTAGTAGTGCTCTCTCAATTGAGCGTGAATCAGTTGATGATCCTGAAATTCGTGCTGAAGTCCTGGAGGCAATATACATGATCACATTACAGGTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF383 DUF384

Protein Analysis

90

Amino Acids

10.22

Weight (kDa)

4.35

Isoelectric Point (pI)

63.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF383 PF04063 7 - 75 7.6e-14 Domain of unknown function (DUF383)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 98
AcsI RAATTY 2 cut(s) 70, 219
AcuI CTGAAG 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 3 cut(s) 53, 64, 172
AluI AGCT 3 cut(s) 53, 64, 172
Alw21I GWGCWC 1 cut(s) 184
AlwI GGATC 1 cut(s) 206
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 2 cut(s) 70, 219
BalI TGGCCA 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 236
BclI TGATCA 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 236
BpmI CTGGAG 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 122
BseBI CCWGG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 51
BshFI GGCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 122
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 3 cut(s) 152, 211, 252
BspANI GGCC 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 69
BspPI GGATC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssMI GATC 3 cut(s) 152, 211, 252
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 41, 140
BstAPI GCANNNNNTGC 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 173
BstKTI GATC 3 cut(s) 155, 214, 255
BstMBI GATC 3 cut(s) 152, 211, 252
BstMWI GCNNNNNNNGC 3 cut(s) 73, 106, 169
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 51
BsuRI GGCC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 122
CviAII CATG 1 cut(s) 250
CviJI RGCY 4 cut(s) 53, 64, 100, 172
CviKI_1 RGCY 4 cut(s) 53, 64, 100, 172
DdeI CTNAG 1 cut(s) 173
DpnI GATC 3 cut(s) 154, 213, 254
DpnII GATC 3 cut(s) 152, 211, 252
EaeI YGGCCR 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 253
FaiI YATR 2 cut(s) 247, 251
FatI CATG 1 cut(s) 249
FbaI TGATCA 1 cut(s) 252
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 123
Hin1II CATG 1 cut(s) 253
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 41, 140
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 106, 169
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 3 cut(s) 152, 211, 252
LpnPI CCDG 7 cut(s) 2, 82, 136, 221, 228, 248, 248
Lsp1109I GCAGC 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 35, 125
MalI GATC 3 cut(s) 154, 213, 254
MboI GATC 3 cut(s) 152, 211, 252
MfeI CAATTG 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 100
MluCI AATT 3 cut(s) 70, 189, 219
MluNI TGGCCA 1 cut(s) 100
MnlI CCTC 1 cut(s) 232
Mox20I TGGCCA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 100
Msp20I TGGCCA 1 cut(s) 100
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 236
MwoI GCNNNNNNNGC 3 cut(s) 73, 106, 169
NdeII GATC 3 cut(s) 152, 211, 252
NlaIII CATG 1 cut(s) 253
PfeI GAWTC 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PstI CTGCAG 1 cut(s) 69
SalI GTCGAC 1 cut(s) 266
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 3 cut(s) 152, 211, 252
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 1 cut(s) 184
SetI ASST 6 cut(s) 21, 55, 66, 118, 174, 267
SfcI CTRYAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 3 cut(s) 70, 189, 219
StyD4I CCNGG 1 cut(s) 234
TaaI ACNGT 2 cut(s) 41, 140
TaqI TCGA 1 cut(s) 267
TasI AATT 3 cut(s) 70, 189, 219
TfiI GAWTC 1 cut(s) 200
TseI GCWGC 1 cut(s) 64
XapI RAATTY 2 cut(s) 70, 219
XmiI GTMKAC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.