Rh2CG439900

Domain of unknown function (DUF383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018621
Physical Location & Seq
Forward (+)
59688445 .. 59711924
23480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG439900.1

Sequence Viewer

Length: 441 bp
ATGCCATTTGCTATCAGAGTTGTGATCCATGTGAATGCATGTAGCTCTAAACAAAATCAAGTGGCGAACTGGCGATTGAGCTTTCACAAGGTGCAAGCTGAGAGCTGGAGCATTGATCTTAAACACACACAAAAGAAGAAGAAGAAGGTTTCTGGAACTATTCGTAACTGTTGTTTTGAAGCTGTGAGCGAGCTGCAGAATTTGCTTTTGATTTCAGAGTTTCTCTGGCCAACTCTGCTTCTACCTGTTGCCGGTAACAAGATTTACAGTCAGCAAGATAGATCAAAAATGCCACTTGAGCTTAGTAGTGCTCTCTCAATTGAGCGTGAACCAGTTGATGATCCTGAAATTCGTGCTGAAGTCCTGGAGGCAATATACATGATCACATTACAGGTGAAAAATGATGCAAGCACTAATGGTTTTCGTTTTTGTTACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF383 DUF384

Protein Analysis

146

Amino Acids

16.77

Weight (kDa)

8.71

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF383 PF04063 43 - 118 3.8e-14 Domain of unknown function (DUF383)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 19, 335
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 2 cut(s) 199, 348
AcuI CTGAAG 1 cut(s) 378
AdeI CACNNNGTG 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 7 cut(s) 45, 81, 98, 105, 182, 193, 301
AluI AGCT 7 cut(s) 45, 81, 98, 105, 182, 193, 301
Alw21I GWGCWC 1 cut(s) 313
AlwI GGATC 2 cut(s) 19, 335
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 2 cut(s) 199, 348
AsuHPI GGTGA 1 cut(s) 406
BalI TGGCCA 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 365
BclI TGATCA 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 194
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 394
BpmI CTGGAG 2 cut(s) 127, 386
BpuEI CTTGAG 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 3 cut(s) 74, 332, 440
BseBI CCWGG 1 cut(s) 365
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 3 cut(s) 74, 332, 440
BseXI GCAGC 1 cut(s) 180
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 251
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 5 cut(s) 24, 115, 281, 340, 381
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 198
BspPI GGATC 2 cut(s) 19, 335
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 3 cut(s) 74, 332, 440
BssAI RCCGGY 1 cut(s) 251
BssMI GATC 5 cut(s) 24, 115, 281, 340, 381
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 170, 269
BstAPI GCANNNNNTGC 1 cut(s) 202
BstC8I GCNNGC 3 cut(s) 96, 191, 409
BstDEI CTNAG 2 cut(s) 99, 302
BstKTI GATC 5 cut(s) 27, 118, 284, 343, 384
BstMBI GATC 5 cut(s) 24, 115, 281, 340, 381
BstMWI GCNNNNNNNGC 3 cut(s) 202, 235, 298
BstNI CCWGG 1 cut(s) 365
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 229
Cac8I GCNNGC 3 cut(s) 96, 191, 409
Cfr10I RCCGGY 1 cut(s) 251
CviAII CATG 3 cut(s) 29, 39, 379
CviJI RGCY 8 cut(s) 45, 81, 98, 105, 182, 193, 229, 301
CviKI_1 RGCY 8 cut(s) 45, 81, 98, 105, 182, 193, 229, 301
DdeI CTNAG 2 cut(s) 99, 302
DpnI GATC 5 cut(s) 26, 117, 283, 342, 383
DpnII GATC 5 cut(s) 24, 115, 281, 340, 381
DraIII CACNNNGTG 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 363
EcoT22I ATGCAT 1 cut(s) 40
FaeI CATG 3 cut(s) 32, 42, 382
FaiI YATR 4 cut(s) 30, 40, 376, 380
FatI CATG 3 cut(s) 28, 38, 378
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 194
GluI GCNGC 1 cut(s) 194
GsuI CTGGAG 2 cut(s) 127, 386
HaeIII GGCC 1 cut(s) 229
HapII CCGG 1 cut(s) 252
Hin1II CATG 3 cut(s) 32, 42, 382
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 17, 217
Hpy188III TCNNGA 2 cut(s) 153, 344
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 170, 269
HpyCH4V TGCA 4 cut(s) 38, 94, 196, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 235, 298
HpyF3I CTNAG 2 cut(s) 99, 302
Hsp92II CATG 3 cut(s) 32, 42, 382
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 5 cut(s) 24, 115, 281, 340, 381
LmnI GCTCC 1 cut(s) 108
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 394
MaeIII GTNAC 3 cut(s) 164, 254, 431
MalI GATC 5 cut(s) 26, 117, 283, 342, 383
MboI GATC 5 cut(s) 24, 115, 281, 340, 381
MboII GAAGA 3 cut(s) 148, 151, 154
MfeI CAATTG 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 3 cut(s) 199, 318, 348
MluNI TGGCCA 1 cut(s) 229
MnlI CCTC 1 cut(s) 361
Mox20I TGGCCA 1 cut(s) 229
Mph1103I ATGCAT 1 cut(s) 40
MscI TGGCCA 1 cut(s) 229
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 33
Msp20I TGGCCA 1 cut(s) 229
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 365
MunI CAATTG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 202, 235, 298
NdeII GATC 5 cut(s) 24, 115, 281, 340, 381
NlaIII CATG 3 cut(s) 32, 42, 382
NsiI ATGCAT 1 cut(s) 40
NspI RCATGY 1 cut(s) 42
PctI GAATGC 1 cut(s) 40
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PstI CTGCAG 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 5 cut(s) 24, 115, 281, 340, 381
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 313
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 3 cut(s) 199, 318, 348
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 170, 269
TasI AATT 3 cut(s) 199, 318, 348
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseI GCWGC 1 cut(s) 193
XapI RAATTY 2 cut(s) 199, 348
XceI RCATGY 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.