Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003008.1

Orthogroup ID

OG0018684

Physical Location & Seq

Genomic Coordinates Forward (+)

66619 .. 67539

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgcagactgaggcgcttccggtggtgaataagtttaacctcactgaggtccctgactccgggtttccgaaaggagttccttgggttcggtatcatggtttttacaaagatcttgagattaatctagtgtggcctggaaaagatgaatctttgggctttaccttttctctctctattcagataatactgttggattcaagcaggaatcagttaaataggagggcccttcagaattgttatacctattgccaaattccaaaatgctttatacgggatgttggcatgaggtttggaattatgtttgagacagaggactccgacatgtgcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0008652 GO:0008930 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009888 GO:0009987 GO:0010087 GO:0016053 GO:0016787 GO:0016798 GO:0016799 GO:0017144 GO:0019509 GO:0019752 GO:0032502 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0071265 GO:0071267 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

B3 PNP_UDP_1

Protein Analysis

110

Amino Acids

12.76

Weight (kDa)

5.75

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018684)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003008.1_g000014 Rmu_sc0018528.1_g000002
rosa_samantha	Rh1CG025000 Rh1DG046600 Rh5BG425400 Rh5BG533100 Rh5CG449500 Rh5CG556700
rosa_wichuraiana	Rw1G001550 Rw7G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	46, 59
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	2 cut(s)	131, 222
ApaI	GGGCCC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	252
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	3 cut(s)	49, 222, 223
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	17
BglII	AGATCT	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	61, 135
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	49, 222, 223
BmiI	GGNNCC	2 cut(s)	51, 224
BmrFI	CCNGG	2 cut(s)	61, 135
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 59
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	2 cut(s)	46, 59
BseMII	CTCAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	226
BshFI	GGCC	2 cut(s)	133, 224
BsiSI	CCGG	2 cut(s)	20, 60
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	46, 59
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	133, 224
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	133, 224
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	51, 224
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	9, 45
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	59, 133
BstSLI	GKGCMC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	133, 224
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	42
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	49, 222, 223
CviAII	CATG	3 cut(s)	95, 283, 322
CviJI	RGCY	3 cut(s)	133, 156, 224
CviKI_1	RGCY	3 cut(s)	133, 156, 224
DdeI	CTNAG	2 cut(s)	9, 45
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoO109I	RGGNCCY	3 cut(s)	49, 222, 223
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	3 cut(s)	98, 286, 325
FaiI	YATR	6 cut(s)	96, 240, 269, 284, 299, 323
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	3 cut(s)	94, 282, 321
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	133, 224
HapII	CCGG	2 cut(s)	20, 60
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	3 cut(s)	98, 286, 325
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	5 cut(s)	56, 146, 194, 205, 314
HpaII	CCGG	2 cut(s)	20, 60
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	4 cut(s)	69, 180, 231, 319
Hpy188III	TCNNGA	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	4, 327
HpyF3I	CTNAG	2 cut(s)	9, 45
Hsp92II	CATG	3 cut(s)	98, 286, 325
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	6 cut(s)	33, 66, 73, 120, 147, 187
MaeI	CTAG	1 cut(s)	125
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	3 cut(s)	232, 252, 294
MlyI	GAGTC	2 cut(s)	50, 308
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	4, 40, 50, 213, 279, 304
MseI	TTAA	3 cut(s)	36, 120, 212
MspI	CCGG	2 cut(s)	20, 60
MspR9I	CCNGG	2 cut(s)	61, 135
MvaI	CCWGG	1 cut(s)	135
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	3 cut(s)	98, 286, 325
NlaIV	GGNNCC	2 cut(s)	51, 224
NspI	RCATGY	1 cut(s)	325
PciI	ACATGT	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	146, 194, 205
PleI	GAGTC	2 cut(s)	50, 308
PpsI	GAGTC	2 cut(s)	50, 308
PpuMI	RGGWCCY	1 cut(s)	49
PscI	ACATGT	1 cut(s)	321
PshBI	ATTAAT	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	51, 224
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	3 cut(s)	49, 222, 223
PspPPI	RGGWCCY	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	109
SaqAI	TTAA	3 cut(s)	36, 120, 212
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	3 cut(s)	49, 222, 223
SchI	GAGTC	2 cut(s)	50, 308
ScrFI	CCNGG	2 cut(s)	61, 135
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	5 cut(s)	42, 51, 164, 245, 290
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	232, 252, 294
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	59, 133
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	189
TasI	AATT	3 cut(s)	232, 252, 294
TfiI	GAWTC	3 cut(s)	146, 194, 205
Tru1I	TTAA	3 cut(s)	36, 120, 212
Tru9I	TTAA	3 cut(s)	36, 120, 212
TscAI	CASTG	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	49
VspI	ATTAAT	1 cut(s)	120
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	1 cut(s)	325
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.