Rh5CG556700

5'-methylthioadenosine S-adenosylhomocysteine nucleosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018684
Physical Location & Seq
Forward (+)
77650060 .. 77651149
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG556700.1

Sequence Viewer

Length: 387 bp
ATGGCTCCTCACGGCGACAAATCGGACGCTGCGGAGGACGCCATGGTTTCCGGAGCTGAGAAGCGCCCCATTTCCTCCGTCCTCATCGTCATCGCTATGCAGACTGAGGCGCTTCCGGTGGTGAATAAGTTTAACCTCACTGAGGTCCCTGACTCCGGGTTTCCGAAAGGAGTTCCTTGGGTTCGGTATCATGGTTTTTACAAAGATCTTGAGATTAATCTAGTGTGGCCTGGAAAAGATGAATCTTTGGTAACTTGGAGAAGAACAAGCTCAAATGGTTCACTTCCGAGTATGCTTATTGGTAAAATCGACAAAGCAAAGAAGTCACAAAGGAATCAATTTTGTACAGCTACAAGCATGGATTTTCAGGGTTTGCTGCAGTTCTAA

Protein Analysis

128

Amino Acids

14.17

Weight (kDa)

7.85

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018684)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003008.1_g000014 Rmu_sc0018528.1_g000002
rosa_samantha Rh1CG025000 Rh1DG046600 Rh5BG425400 Rh5BG533100 Rh5CG449500 Rh5CG556700
rosa_wichuraiana Rw1G001550 Rw7G037150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 2 cut(s) 142, 155
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 3 cut(s) 56, 270, 350
AluI AGCT 3 cut(s) 56, 270, 350
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 29, 376
AseI ATTAAT 1 cut(s) 216
AspLEI GCGC 2 cut(s) 66, 112
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 145
BbvI GCAGC 2 cut(s) 16, 363
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 1 cut(s) 157
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 377
BfoI RGCGCY 2 cut(s) 67, 113
BglII AGATCT 1 cut(s) 205
BisI GCNGC 2 cut(s) 30, 377
BlsI GCNGC 2 cut(s) 31, 378
Bme1390I CCNGG 2 cut(s) 157, 231
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 2 cut(s) 6, 147
BmrFI CCNGG 2 cut(s) 157, 231
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 42, 176
BsaWI WCCGGW 2 cut(s) 50, 115
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 155
BseAI TCCGGA 1 cut(s) 50
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 42, 176
BseLI CCNNNNNNNGG 2 cut(s) 142, 155
BseMII CTCAG 3 cut(s) 48, 96, 132
BseXI GCAGC 2 cut(s) 16, 363
BshFI GGCC 1 cut(s) 229
BsiSI CCGG 3 cut(s) 51, 116, 156
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 142, 155
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 229
Bsp13I TCCGGA 1 cut(s) 50
Bsp1407I TGTACA 1 cut(s) 344
Bsp143I GATC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 3 cut(s) 49, 97, 133
BspEI TCCGGA 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 6, 147
BspMAI CTGCAG 1 cut(s) 381
BsrGI TGTACA 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 42, 176
BssMI GATC 1 cut(s) 205
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 2 cut(s) 42, 176
Bst2UI CCWGG 1 cut(s) 231
BstACI GRCGYC 1 cut(s) 39
BstAUI TGTACA 1 cut(s) 344
BstDEI CTNAG 3 cut(s) 57, 105, 141
BstDSI CCRYGG 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 140
BstH2I RGCGCY 2 cut(s) 67, 113
BstHHI GCGC 2 cut(s) 66, 112
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 2 cut(s) 155, 229
BstSFI CTRYAG 1 cut(s) 377
BstV1I GCAGC 2 cut(s) 16, 363
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 138
CfoI GCGC 2 cut(s) 66, 112
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 2 cut(s) 35, 47
Csp6I GTAC 1 cut(s) 345
CviAII CATG 3 cut(s) 43, 191, 358
CviJI RGCY 5 cut(s) 5, 56, 229, 270, 350
CviKI_1 RGCY 5 cut(s) 5, 56, 229, 270, 350
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 3 cut(s) 57, 105, 141
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 42, 176
Eco47I GGWCC 1 cut(s) 145
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 42, 176
ErhI CCWWGG 2 cut(s) 42, 176
FaeI CATG 3 cut(s) 46, 194, 361
FaiI YATR 5 cut(s) 44, 98, 192, 293, 359
FaqI GGGAC 1 cut(s) 131
FatI CATG 3 cut(s) 42, 190, 357
Fnu4HI GCNGC 2 cut(s) 30, 377
Fsp4HI GCNGC 2 cut(s) 30, 377
FspBI CTAG 1 cut(s) 221
GlaI GCGC 2 cut(s) 65, 111
GluI GCNGC 2 cut(s) 30, 377
HaeII RGCGCY 2 cut(s) 67, 113
HaeIII GGCC 1 cut(s) 229
HapII CCGG 3 cut(s) 51, 116, 156
HgaI GACGC 2 cut(s) 35, 47
HhaI GCGC 2 cut(s) 66, 112
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 3 cut(s) 46, 194, 361
Hin6I GCGC 2 cut(s) 64, 110
HinP1I GCGC 2 cut(s) 64, 110
HinfI GANTC 3 cut(s) 152, 242, 334
HpaII CCGG 3 cut(s) 51, 116, 156
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 3 cut(s) 25, 165, 288
Hpy188III TCNNGA 2 cut(s) 51, 209
Hpy8I GTNNAC 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 100, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 3 cut(s) 57, 105, 141
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 3 cut(s) 46, 194, 361
HspAI GCGC 2 cut(s) 64, 110
Kpn2I TCCGGA 1 cut(s) 50
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 2 cut(s) 10, 53
LpnPI CCDG 7 cut(s) 64, 129, 162, 169, 216, 243, 353
Lsp1109I GCAGC 2 cut(s) 16, 363
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 250, 324
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 273
MflI RGATCY 1 cut(s) 205
MluCI AATT 1 cut(s) 338
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 7 cut(s) 18, 28, 85, 92, 100, 136, 146
MroI TCCGGA 1 cut(s) 50
MseI TTAA 2 cut(s) 132, 216
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 3 cut(s) 51, 116, 156
MspR9I CCNGG 2 cut(s) 157, 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 42
NdeII GATC 1 cut(s) 205
NlaIII CATG 3 cut(s) 46, 194, 361
NlaIV GGNNCC 2 cut(s) 6, 147
NmuCI GTSAC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 242, 334
PkrI GCNGC 2 cut(s) 31, 378
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 145
PshBI ATTAAT 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 6, 147
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
PstI CTGCAG 1 cut(s) 381
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 2 cut(s) 132, 216
SatI GCNGC 2 cut(s) 30, 377
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 157, 231
SetI ASST 5 cut(s) 58, 138, 147, 272, 352
SfcI CTRYAG 1 cut(s) 377
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 338
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 155, 229
StyI CCWWGG 2 cut(s) 42, 176
TaqI TCGA 1 cut(s) 309
TasI AATT 1 cut(s) 338
TatI WGTACW 1 cut(s) 344
TfiI GAWTC 2 cut(s) 242, 334
Tru1I TTAA 2 cut(s) 132, 216
Tru9I TTAA 2 cut(s) 132, 216
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 324
TseI GCWGC 2 cut(s) 29, 376
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 145
VspI ATTAAT 1 cut(s) 216
XagI CCTNNNNNAGG 1 cut(s) 140
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.